The eukaryotic replication complex and its affinity modification analysis

Molekulyarnaya Biologiya

Volumn 37, Issue 4, 2003, Pages 563-572

  Lavrik, O I ^a   Khlimankov, D Yu ^a   Khodyreva, S N ^a  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLINE; DNA DIRECTED DNA POLYMERASE ALPHA; DNA DIRECTED DNA POLYMERASE DELTA; DNA DIRECTED DNA POLYMERASE EPSILON; DNA POLYMERASE; REPLICATION FACTOR C; REPLICATION PROTEIN A;

CHEMICAL STRUCTURE; DNA MODIFICATION; DNA REPAIR; DNA REPLICATION; DNA SYNTHESIS; EUKARYOTE; INSTRUMENTATION; PHOTOAFFINITY LABELING; PROTEIN NUCLEIC ACID INTERACTION; PROTEIN PROTEIN INTERACTION; REVIEW; X RAY ANALYSIS;

EUKARYOTA;

EID: 3543060023     PISSN: 00268984     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (33)

1. Hubscher U., Maga G., Spadari S. 2002. Eukaryotic DNA polymerases. Annu. Rev. Biochem. 71, 133-163.
2. Tsurimoto T. 1998. PCNA, a multifunctional ring on DNA. Biochem. Biophys. Acta. 1443, 23-39.
3. Maga G., Villani G., Tillement V., Stucki M., Locatelli G.A., Frouin I., Spadari S., Hubscher U. 2001. Okazaki fragment processing: modulation of the strand displacement activity of DNA polymerase delta by the concerted action of replication protein A, proliferating cell nuclear antigen, and flap endonuclease-1. Proc. Natl. Acad. Sci. USA. 98, 14298-14303.
4. Yuzhakov A., Kelman Z., Hurwitz J., O'Donnell M. 1999. Multiple competition reactions for RPA order the assembly of the DNA polymerase delta holoenzyme. EMBO J. 18, 6189-6199.
5. Hubscher U., Nasheuer H.P., Syvaoja J.E. 2000. Eukaryotic DNA polymerases, a growing family. Trends Biochem. Sci. 25, 143-147.
6. Kolpashchikov D.M., Ivanova T.M., Bogachev V.S., Nasheuer H.P., Weisshart K., Favre A., Pestryakov P.E., Lavrik O.I. 2000. Synthesis of base-substituted dUTP analogues carrying a photoreactive group and their application to study human replication protein A. Bioconjug. Chem. 11, 445-451.
7. Wlassoff W.A., Dobrikov M.I., Safronov I.V., Dudko R.Y., Bogachev V.S., Kandaurova V.V., Shishkin G.V., Dymshits G.M., Lavrik O.I. 1995. Synthesis and characterization of (d)NTP derivatives substituted with residues of different photoreagents. Bioconjug. Chem. 6, 352-360.
8. Lavrik O.I., Prasad R., Beard W.A., Safronov I.V., Dobrikov M.I., Srivastava D.K., Shishkin G.V., Wood T.G., Wilson S.H. 1996. dNTP binding to HIV-1 reverse transcriptase and mammalian DNA polymerase beta as revealed by affinity labeling with a photoreactive dNTP analog. J. Biol. Chem. 271, 21891-21897.
9. Doronin S.V., Dobrikov M.I., Buckle M., Roux P., Bue H., Lavrik O.I. 1994. Affinity modification of human immunodeficiency virus reverse transcriptase and DNA template by photoreactive dCTP analogs. FEBS Lett. 354, 200-202.
10. Doronin S.V., Dobrikov M.I., Lavrik O.I. 1992. Photoaffinity labeling of DNA polymerase alpha DNA primase complex based on the catalytic competence of a dNTP reactive analog. FEBS Lett. 313, 31-33.
11. Doerhoefer S., Khodyreva S., Safronov I.V., Wlassoff W.A., Anarbaev R., Lavrik O.I., Holler E. 1998. Molecular constituents of the replication apparatus in the plasmodium of Physarum polycephalum: identification by photoaffinity labelling. Microbiology. 144, 3181-3193.
12. Bochkareva E., Korolev S., Lees-Miller S.P., Bochkarev A. 2002. Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA. EMBO J. 21, 1855-1863.
13. Wold M.S. 1997. Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism. Annu. Rev. Biochem. 66, 61-92.
14. Iftode C., Daniely Y., Borowiec J.A. 1999. Replication protein A (RPA): the eukaryotic SSB. Crit. Rev. Biochem. Mol. Biol. 34, 141-180.
15. Lavrik O.I., Nasheuer H.-P., Weisshart K., Wold M.S., Prasad R., Beard W. A., Wilson S.H., Favre A. 1998. Subunits of human replication protein A are crosslinked by photoreactive primers synthesized by DNA polymerases. Nucleic Acids Res. 26, 602-607.
16. Lavrik O.I., Kolpashchikov D.M., Weisshart K., Nasheuer H.-P., Khodyreva S.N., Favre A. 1999. RPA subunit arrangement near the 3′-end of the primer is modulated by the length of the template strand and cooperative protein interactions. Nucleic Acids Res. 27, 4235-4240.
17. Lavrik O.I., Kolpashchikov D.M., Nasheuer H.-P., Weisshart K., Favre A. 1998. Alternative conformations of human replication protein A are detected by crosslinks with primers carrying a photoreactive group at the 3′-end. FEBS Lett. 441, 186-190.
18. Kolpashchikov D.M., Khodyreva S.N., Khlimankov D.Y., Wold M.S., Favre A., Lavrik O.I. 2001. Polarity of human replication protein A binding to DNA. Nucleic Acids Res. 29, 373-379.
19. Mass G., Nethanel T., Kaufmann G. 1998. The middle subunit of replication protein A contacts growing RNA-DNA primers in replicating simian virus 40 chromosomes. Mol. Cell. Biol. 18, 6399-6407.
20. Mass G., Nethanel T., Lavrik O.I., Wold M.S., Kaufmann G. 2001. Replication protein A modulates its interface with the primed DNA template during RNA-DNA primer elongation in replicating SV40 chromosomes. Nucleic Acids Res. 29, 3892-3899.
21. Kolpashchikov D.M., Weisshart K., Nasheuer H.-P., Khodyreva S.N., Fanning E., Favre A., Lavrik O.I. 1999. Interaction of the p70 subunit of RPA with a DNA template directs p32 to the 3′-end of nascent DNA. FEBS Lett. 450, 131-134.
22. Pestryakov P., Weisshart K., Khodyreva S.N., Nasheuer H.-P., Lavrik O.I. 2002. In Proceedings of the third international conference on bioinformatics of genome regulation and structure. Novosibirsk: IC&G, 4, 28-30.
23. Kolpashchikov D.M., Hughes P., Favre A., Baldacci G., Lavrik O.I. 2001. Localization of the large subunit of replication factor C near the 5′ end of DNA primers. J. Mol. Recognit. 14, 239-244.
24. Lieber M.R. 1997. The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair. Bioessays. 19, 233-240.
25. Khodyreva S.N., Nazarkina J.K., Petruseva I.O., Safronov I.V., Lavrik O.I. 2002. In Proceedings of the third international conference on bioinformatics of genome regulation and structure. Novosibirsk: IC&G, 4, 13-15.
26. Lavrik O.I., Prasad R., Sobol R.W., Horton J.K., Ackerman E.J., Wilson S.H. 2001. Photoaffinity labeling of mouse fibroblast enzymes by a base excision repair intermediate. Evidence for the role of poly(ADP-ribose) polymerase-1 in DNA repair. J. Biol. Chem. 276, 25541-25548.
27. Prasad R., Lavrik O.I., Kim S.J., Kedar P., Yang X.P., Vande Berg B.J., Wilson S.H. 2001. DNA polymerase beta-mediated long patch base excision repair. Poly(ADP-ribose)polymerase-1 stimulates strand displacement DNA synthesis. J. Biol. Chem. 276, 32411-32414.
28. Lavrik O.I., Kolpashchikov D.M., Prasad R., Sobol R.W., Wilson S.H. 2002. Binary system for selective photoaffinity labeling of base excision repair DNA polymerases. Nucleic Acids Res. 30, 73.