-
1
-
-
1242299059
-
Protein stabilization by salt bridges: concepts, experimental approaches and clarification of some misunderstandings
-
Bosshard H.R., Marti D.N., and Jelesarov I. Protein stabilization by salt bridges: concepts, experimental approaches and clarification of some misunderstandings. J. Mol. Recognit. 17 (2004) 1-16
-
(2004)
J. Mol. Recognit.
, vol.17
, pp. 1-16
-
-
Bosshard, H.R.1
Marti, D.N.2
Jelesarov, I.3
-
3
-
-
0036902235
-
Close-range electrostatic interactions in proteins
-
Kumar S., and Nussinov R. Close-range electrostatic interactions in proteins. Chembiochem. 3 (2002) 604-617
-
(2002)
Chembiochem.
, vol.3
, pp. 604-617
-
-
Kumar, S.1
Nussinov, R.2
-
4
-
-
0032054517
-
Electrostatic effects in macromolecules: fundamental concepts and practical modeling
-
Warshel A., and Papazyan A. Electrostatic effects in macromolecules: fundamental concepts and practical modeling. Curr. Opin. Struct. Biol. 8 (1998) 211-217
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 211-217
-
-
Warshel, A.1
Papazyan, A.2
-
5
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman B., Dantas G., Ireton G.C., Varani G., Stoddard B.L., and Baker D. Design of a novel globular protein fold with atomic-level accuracy. Science 302 (2003) 1364-1368
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
6
-
-
0023645765
-
Prediction of electrostatic effects of engineering of protein charges
-
Sternberg M.J., Hayes F.R., Russell A.J., Thomas P. G., and Fersht A.R. Prediction of electrostatic effects of engineering of protein charges. Nature 330 (1987) 86-88
-
(1987)
Nature
, vol.330
, pp. 86-88
-
-
Sternberg, M.J.1
Hayes, F.R.2
Russell, A.J.3
Thomas, P. G.4
Fersht, A.R.5
-
7
-
-
0036306236
-
On the role of electrostatic interactions in the design of protein-protein interfaces
-
Sheinerman F.B., and Honig B. On the role of electrostatic interactions in the design of protein-protein interfaces. J. Mol. Biol. 318 (2002) 161-177
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 161-177
-
-
Sheinerman, F.B.1
Honig, B.2
-
8
-
-
19644387091
-
On the orientation of the backbone dipoles in native folds
-
Ripoll D.R., Vila J.A., and Scheraga H.A. On the orientation of the backbone dipoles in native folds. Proc. Natl Acad. Sci. USA 102 (2005) 7559-7564
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 7559-7564
-
-
Ripoll, D.R.1
Vila, J.A.2
Scheraga, H.A.3
-
9
-
-
0346258292
-
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins
-
Jones S., Shanahan H.P., Berman H.M., and Thornton J.M. Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucl. Acids Res. 31 (2003) 7189-7198
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 7189-7198
-
-
Jones, S.1
Shanahan, H.P.2
Berman, H.M.3
Thornton, J.M.4
-
10
-
-
0035957234
-
A novel view of pH titration in biomolecules
-
Onufriev A., Case D.A., and Ullmann G.M. A novel view of pH titration in biomolecules. Biochemistry 40 (2001) 3413-3419
-
(2001)
Biochemistry
, vol.40
, pp. 3413-3419
-
-
Onufriev, A.1
Case, D.A.2
Ullmann, G.M.3
-
11
-
-
0029926150
-
Interhelical salt bridges, coiled-coil stability, and specificity of dimerization
-
Lavigne P., Sonnichsen F.D., Kay C.M., and Hodges R. S. Interhelical salt bridges, coiled-coil stability, and specificity of dimerization. Science 271 (1996) 1136-1138
-
(1996)
Science
, vol.271
, pp. 1136-1138
-
-
Lavigne, P.1
Sonnichsen, F.D.2
Kay, C.M.3
Hodges, R. S.4
-
12
-
-
0029926150
-
Interhelical salt bridges, coiled-coil stability, and specificity of dimerization
-
Lumb K.J., and Kim P.S. Interhelical salt bridges, coiled-coil stability, and specificity of dimerization. Science 271 (1996) 1136-1138
-
(1996)
Science
, vol.271
, pp. 1136-1138
-
-
Lumb, K.J.1
Kim, P.S.2
-
13
-
-
1242317050
-
Salt-bridges can stabilize but do not accelerate the folding of the homodimeric coiled-coil peptide GCN4-p1
-
Ibarra-Molero B., Zitzewitz J.A., and Matthews C.R. Salt-bridges can stabilize but do not accelerate the folding of the homodimeric coiled-coil peptide GCN4-p1. J. Mol. Biol. 336 (2004) 989-996
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 989-996
-
-
Ibarra-Molero, B.1
Zitzewitz, J.A.2
Matthews, C.R.3
-
14
-
-
33747791711
-
Statistical analysis of intrahelical ionic interactions in alpha-helices and coiled coils
-
Meier M., and Burkhard P. Statistical analysis of intrahelical ionic interactions in alpha-helices and coiled coils. J. Struct. Biol. 155 (2006) 116-129
-
(2006)
J. Struct. Biol.
, vol.155
, pp. 116-129
-
-
Meier, M.1
Burkhard, P.2
-
15
-
-
0026331267
-
X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil
-
O'Shea E.K., Klemm J.D., Kim P.S., and Alber T. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil. Science 254 (1991) 539-544
-
(1991)
Science
, vol.254
, pp. 539-544
-
-
O'Shea, E.K.1
Klemm, J.D.2
Kim, P.S.3
Alber, T.4
-
16
-
-
0023461350
-
Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design
-
Marqusee S., and Baldwin R.L. Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design. Proc. Natl Acad. Sci. USA 84 (1987) 8898-8902
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 8898-8902
-
-
Marqusee, S.1
Baldwin, R.L.2
-
17
-
-
0029030233
-
Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper
-
Lumb K.J., and Kim P.S. Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper. Science 268 (1995) 436-439
-
(1995)
Science
, vol.268
, pp. 436-439
-
-
Lumb, K.J.1
Kim, P.S.2
-
18
-
-
0016774265
-
Tropomyosin coiled-coil interactions: evidence for an unstaggered structure
-
McLachlan A.D., and Stewart M. Tropomyosin coiled-coil interactions: evidence for an unstaggered structure. J. Mol. Biol. 98 (1975) 293-304
-
(1975)
J. Mol. Biol.
, vol.98
, pp. 293-304
-
-
McLachlan, A.D.1
Stewart, M.2
-
19
-
-
0034653908
-
The coiled-coil trigger site of the rod domain of cortexillin I unveils a distinct network of interhelical and intrahelical salt bridges
-
Burkhard P., Kammerer R.A., Steinmetz M.O., Bourenkov G.P., and Aebi U. The coiled-coil trigger site of the rod domain of cortexillin I unveils a distinct network of interhelical and intrahelical salt bridges. Struct. Fold. Des. 8 (2000) 223-230
-
(2000)
Struct. Fold. Des.
, vol.8
, pp. 223-230
-
-
Burkhard, P.1
Kammerer, R.A.2
Steinmetz, M.O.3
Bourenkov, G.P.4
Aebi, U.5
-
20
-
-
0037634019
-
Unique stabilizing interactions identified in the two-stranded alpha-helical coiled-coil: crystal structure of a cortexillin I/GCN4 hybrid coiled-coil peptide
-
Lee D.L., Ivaninskii S., Burkhard P., and Hodges R.S. Unique stabilizing interactions identified in the two-stranded alpha-helical coiled-coil: crystal structure of a cortexillin I/GCN4 hybrid coiled-coil peptide. Protein Sci. 12 (2003) 1395-1405
-
(2003)
Protein Sci.
, vol.12
, pp. 1395-1405
-
-
Lee, D.L.1
Ivaninskii, S.2
Burkhard, P.3
Hodges, R.S.4
-
21
-
-
0028894384
-
Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA
-
Glover J.N., and Harrison S.C. Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA. Nature 373 (1995) 257-261
-
(1995)
Nature
, vol.373
, pp. 257-261
-
-
Glover, J.N.1
Harrison, S.C.2
-
22
-
-
0032984885
-
Contributions of the ionization states of acidic residues to the stability of the coiled coil domain of matrilin-1
-
Dames S.A., Kammerer R.A., Moskau D., Engel J., and Alexandrescu A.T. Contributions of the ionization states of acidic residues to the stability of the coiled coil domain of matrilin-1. FEBS Letters 446 (1999) 75-80
-
(1999)
FEBS Letters
, vol.446
, pp. 75-80
-
-
Dames, S.A.1
Kammerer, R.A.2
Moskau, D.3
Engel, J.4
Alexandrescu, A.T.5
-
24
-
-
0038047060
-
Electrostatic interactions in leucine zippers: thermodynamic analysis of the contributions of Glu and His residues and the effect of mutating salt bridges
-
Marti D.N., and Bosshard H.R. Electrostatic interactions in leucine zippers: thermodynamic analysis of the contributions of Glu and His residues and the effect of mutating salt bridges. J. Mol. Biol. 330 (2003) 621-637
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 621-637
-
-
Marti, D.N.1
Bosshard, H.R.2
-
25
-
-
0028204490
-
Do salt bridges stabilize proteins? A continuum electrostatic analysis
-
Hendsch Z.S., and Tidor B. Do salt bridges stabilize proteins? A continuum electrostatic analysis. Protein Sci. 3 (1994) 211-226
-
(1994)
Protein Sci.
, vol.3
, pp. 211-226
-
-
Hendsch, Z.S.1
Tidor, B.2
-
26
-
-
0035958079
-
An intrahelical salt bridge within the trigger site stabilizes the GCN4 leucine zipper
-
Kammerer R.A., Jaravine V.A., Frank S., Schulthess T., Landwehr R., Lustig A., et al. An intrahelical salt bridge within the trigger site stabilizes the GCN4 leucine zipper. J. Biol. Chem. 276 (2001) 13685-13688
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 13685-13688
-
-
Kammerer, R.A.1
Jaravine, V.A.2
Frank, S.3
Schulthess, T.4
Landwehr, R.5
Lustig, A.6
-
27
-
-
0002870406
-
Observation of histidine residues in proteins by means of nuclear magnetic resonance spectroscopy
-
Markley J.L. Observation of histidine residues in proteins by means of nuclear magnetic resonance spectroscopy. Acc. Chem. Res. 8 (1975) 70-80
-
(1975)
Acc. Chem. Res.
, vol.8
, pp. 70-80
-
-
Markley, J.L.1
-
30
-
-
0033551039
-
a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions
-
a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions. Biochemistry 38 (1999) 4896-4903
-
(1999)
Biochemistry
, vol.38
, pp. 4896-4903
-
-
Kuhlman, B.1
Luisi, D.L.2
Young, P.3
Raleigh, D.P.4
-
31
-
-
0025234587
-
pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme
-
Anderson D.E., Becktel W.J., and Dahlquist F.W. pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme. Biochemistry 29 (1990) 2403-2408
-
(1990)
Biochemistry
, vol.29
, pp. 2403-2408
-
-
Anderson, D.E.1
Becktel, W.J.2
Dahlquist, F.W.3
-
32
-
-
0003489517
-
-
Academic Press, San Diego
-
Cavanagh J., Fairbrother W.J., Palmer A.G., and Skelton N.J. Protein NMR Spectroscopy: Principles and Practice (1996), Academic Press, San Diego
-
(1996)
Protein NMR Spectroscopy: Principles and Practice
-
-
Cavanagh, J.1
Fairbrother, W.J.2
Palmer, A.G.3
Skelton, N.J.4
-
33
-
-
0028114966
-
NMR and X-ray evidence that the HIV protease catalytic aspartyl groups are protonated in the complex formed by the protease and a non-peptide cyclic urea-based inhibitor
-
Yamazaki T., Nicholson L.K., Torchia D.A., Wingfield P., Stahl S.J., Kaufman J.D., et al. NMR and X-ray evidence that the HIV protease catalytic aspartyl groups are protonated in the complex formed by the protease and a non-peptide cyclic urea-based inhibitor. J. Am. Chem. Soc. 116 (1994) 10791-10792
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 10791-10792
-
-
Yamazaki, T.1
Nicholson, L.K.2
Torchia, D.A.3
Wingfield, P.4
Stahl, S.J.5
Kaufman, J.D.6
-
35
-
-
0027536094
-
Structure and dynamics of the acid-denatured molten globule state of alpha-lactalbumin: a two-dimensional NMR study
-
Alexandrescu A.T., Evans P.A., Pitkeathly M., Baum J., and Dobson C.M. Structure and dynamics of the acid-denatured molten globule state of alpha-lactalbumin: a two-dimensional NMR study. Biochemistry 32 (1993) 1707-1718
-
(1993)
Biochemistry
, vol.32
, pp. 1707-1718
-
-
Alexandrescu, A.T.1
Evans, P.A.2
Pitkeathly, M.3
Baum, J.4
Dobson, C.M.5
-
36
-
-
34249845041
-
Molecular basis of coiled-coil formation
-
Steinmetz M.O., Jelesarov I., Matousek W.M., Honnappa S., Jahnke W., Missimer J., et al. Molecular basis of coiled-coil formation. Proc. Natl Acad. Sci. USA 104 (2007) 7062-7067
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 7062-7067
-
-
Steinmetz, M.O.1
Jelesarov, I.2
Matousek, W.M.3
Honnappa, S.4
Jahnke, W.5
Missimer, J.6
-
37
-
-
0032506029
-
An autonomous folding unit mediates the assembly of two-stranded coiled coils
-
Kammerer R.A., Schulthess T., Landwehr R., Lustig A., Engel J., Aebi U., and Steinmetz M.O. An autonomous folding unit mediates the assembly of two-stranded coiled coils. Proc. Natl Acad. Sci. USA 95 (1998) 13419-13424
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 13419-13424
-
-
Kammerer, R.A.1
Schulthess, T.2
Landwehr, R.3
Lustig, A.4
Engel, J.5
Aebi, U.6
Steinmetz, M.O.7
-
39
-
-
27744471390
-
a shifts of titratable residues at high denaturant concentration and the impact on protein stability
-
a shifts of titratable residues at high denaturant concentration and the impact on protein stability. Biophys. Chem. 118 (2005) 88-92
-
(2005)
Biophys. Chem.
, vol.118
, pp. 88-92
-
-
Marti, D.N.1
-
40
-
-
0035193201
-
pH corrections and protein ionization in water/guanidinium chloride
-
Garcia-Mira M.M., and Sanchez-Ruiz J.M. pH corrections and protein ionization in water/guanidinium chloride. Biophys. J. 81 (2001) 3489-3502
-
(2001)
Biophys. J.
, vol.81
, pp. 3489-3502
-
-
Garcia-Mira, M.M.1
Sanchez-Ruiz, J.M.2
-
41
-
-
0036629213
-
pH corrections in chemical denaturant solutions
-
Acevedo O., Guzman-Casado M., Garcia-Mira M.M., Ibarra-Molero B., and Sanchez-Ruiz J.M. pH corrections in chemical denaturant solutions. Anal. Biochem. 306 (2002) 158-161
-
(2002)
Anal. Biochem.
, vol.306
, pp. 158-161
-
-
Acevedo, O.1
Guzman-Casado, M.2
Garcia-Mira, M.M.3
Ibarra-Molero, B.4
Sanchez-Ruiz, J.M.5
-
42
-
-
34249053273
-
NMR spin state exchange spectroscopy reveals equilibrium of two distinct conformations of leucine zipper GCN4 in solution
-
Nikolaev Y., and Pervushin K. NMR spin state exchange spectroscopy reveals equilibrium of two distinct conformations of leucine zipper GCN4 in solution. J. Am. Chem. Soc. 129 (2007) 6461-6469
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 6461-6469
-
-
Nikolaev, Y.1
Pervushin, K.2
-
43
-
-
0034700307
-
pH dependence of stability of staphylococcal nuclease: evidence of substantial electrostatic interactions in the denatured state
-
Whitten S.T., and Garcia-Moreno E.B. pH dependence of stability of staphylococcal nuclease: evidence of substantial electrostatic interactions in the denatured state. Biochemistry 39 (2000) 14292-14304
-
(2000)
Biochemistry
, vol.39
, pp. 14292-14304
-
-
Whitten, S.T.1
Garcia-Moreno, E.B.2
-
44
-
-
0037133605
-
A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins
-
Zhou H.X. A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. Proc. Natl Acad. Sci. USA 99 (2002) 3569-3574
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 3569-3574
-
-
Zhou, H.X.1
-
45
-
-
0037467111
-
Direct test of the Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins
-
Zhou H.X. Direct test of the Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. J. Am. Chem. Soc. 125 (2003) 2060-2061
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 2060-2061
-
-
Zhou, H.X.1
-
46
-
-
33645034410
-
Molecular mechanisms of pH-driven conformational transitions of proteins: insights from continuum electrostatics calculations of acid unfolding
-
Fitch C.A., Whitten S.T., Hilser V.J., and Garcia-Moreno E.B. Molecular mechanisms of pH-driven conformational transitions of proteins: insights from continuum electrostatics calculations of acid unfolding. Proteins: Struct. Funct. Genet. 63 (2006) 113-126
-
(2006)
Proteins: Struct. Funct. Genet.
, vol.63
, pp. 113-126
-
-
Fitch, C.A.1
Whitten, S.T.2
Hilser, V.J.3
Garcia-Moreno, E.B.4
-
48
-
-
0030865458
-
Temperature dependence of histidine ionization constants in myoglobin
-
Bhattacharya S., and Lecomte J.T. Temperature dependence of histidine ionization constants in myoglobin. Biophys. J. 73 (1997) 3241-3256
-
(1997)
Biophys. J.
, vol.73
, pp. 3241-3256
-
-
Bhattacharya, S.1
Lecomte, J.T.2
-
49
-
-
1842687872
-
Biomolecular cryocrystallography: structural changes during flash-cooling
-
Halle B. Biomolecular cryocrystallography: structural changes during flash-cooling. Proc. Natl Acad. Sci. USA 101 (2004) 4793-4798
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 4793-4798
-
-
Halle, B.1
-
51
-
-
18144394277
-
Are acidic and basic groups in buried proteins predicted to be ionized?
-
Kim J., Mao J., and Gunner M.R. Are acidic and basic groups in buried proteins predicted to be ionized?. J. Mol. Biol. 348 (2005) 1283-1298
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 1283-1298
-
-
Kim, J.1
Mao, J.2
Gunner, M.R.3
-
53
-
-
0030050327
-
Characterization of the pH titration shifts of ribonuclease A by one- and two-dimensional nuclear magnetic resonance spectroscopy
-
Baker W.R., and Kintanar A. Characterization of the pH titration shifts of ribonuclease A by one- and two-dimensional nuclear magnetic resonance spectroscopy. Arch. Biochem. Biophys. 327 (1996) 189-199
-
(1996)
Arch. Biochem. Biophys.
, vol.327
, pp. 189-199
-
-
Baker, W.R.1
Kintanar, A.2
-
54
-
-
0033214566
-
Protein titration in the crystal state
-
Berisio R., Lamzin V.S., Sica F., Wilson K.S., Zagari A., and Mazzarella L. Protein titration in the crystal state. J. Mol. Biol. 292 (1999) 845-854
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 845-854
-
-
Berisio, R.1
Lamzin, V.S.2
Sica, F.3
Wilson, K.S.4
Zagari, A.5
Mazzarella, L.6
-
56
-
-
0030610243
-
a measurements from nuclear magnetic resonance for the B1 and B2 immunoglobulin G-binding domains of protein G: comparison with calculated values for nuclear magnetic resonance and X-ray structures
-
a measurements from nuclear magnetic resonance for the B1 and B2 immunoglobulin G-binding domains of protein G: comparison with calculated values for nuclear magnetic resonance and X-ray structures. Biochemistry 36 (1997) 3580-3589
-
(1997)
Biochemistry
, vol.36
, pp. 3580-3589
-
-
Khare, D.1
Alexander, P.2
Antosiewicz, J.3
Bryan, P.4
Gilson, M.5
Orban, J.6
-
57
-
-
0037432563
-
Contribution of surface salt bridges to protein stability: guidelines for protein engineering
-
Makhatadze G.I., Loladze V.V., Ermolenko D.N., Chen X., and Thomas S.T. Contribution of surface salt bridges to protein stability: guidelines for protein engineering. J. Mol. Biol. 327 (2003) 1135-1148
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 1135-1148
-
-
Makhatadze, G.I.1
Loladze, V.V.2
Ermolenko, D.N.3
Chen, X.4
Thomas, S.T.5
-
60
-
-
0028859420
-
Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility
-
You T.J., and Bashford D. Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility. Biophys. J. 69 (1995) 1721-1733
-
(1995)
Biophys. J.
, vol.69
, pp. 1721-1733
-
-
You, T.J.1
Bashford, D.2
-
61
-
-
0032562663
-
Tenascin-C hexabrachion assembly is a sequential two-step process initiated by coiled-coil alpha-helices
-
Kammerer R.A., Schulthess T., Landwehr R., Lustig A., Fischer D., and Engel J. Tenascin-C hexabrachion assembly is a sequential two-step process initiated by coiled-coil alpha-helices. J. Biol. Chem. 273 (1998) 10602-10608
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 10602-10608
-
-
Kammerer, R.A.1
Schulthess, T.2
Landwehr, R.3
Lustig, A.4
Fischer, D.5
Engel, J.6
-
62
-
-
0030841383
-
Heteronuclear NMR assignments and secondary structure of the coiled coil trimerization domain from cartilage matrix protein in oxidized and reduced forms
-
Wiltscheck R., Kammerer R.A., Dames S.A., Schulthess T., Blommers M.J., Engel J., and Alexandrescu A.T. Heteronuclear NMR assignments and secondary structure of the coiled coil trimerization domain from cartilage matrix protein in oxidized and reduced forms. Protein Sci. 6 (1997) 1734-1745
-
(1997)
Protein Sci.
, vol.6
, pp. 1734-1745
-
-
Wiltscheck, R.1
Kammerer, R.A.2
Dames, S.A.3
Schulthess, T.4
Blommers, M.J.5
Engel, J.6
Alexandrescu, A.T.7
-
63
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace C.N. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol. 131 (1986) 266-280
-
(1986)
Methods Enzymol.
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
64
-
-
0031851484
-
NMR structure of a parallel homotrimeric coiled coil
-
Dames S.A., Kammerer R.A., Wiltscheck R., Engel J., and Alexandrescu A.T. NMR structure of a parallel homotrimeric coiled coil. Nature Struct. Biol. 5 (1998) 687-691
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 687-691
-
-
Dames, S.A.1
Kammerer, R.A.2
Wiltscheck, R.3
Engel, J.4
Alexandrescu, A.T.5
-
65
-
-
0028783624
-
Probing the folding mechanism of a leucine zipper peptide by stopped-flow circular dichroism spectroscopy
-
Zitzewitz J.A., Bilsel O., Luo J., Jones B.E., and Matthews C.R. Probing the folding mechanism of a leucine zipper peptide by stopped-flow circular dichroism spectroscopy. Biochemistry 34 (1995) 12812-12819
-
(1995)
Biochemistry
, vol.34
, pp. 12812-12819
-
-
Zitzewitz, J.A.1
Bilsel, O.2
Luo, J.3
Jones, B.E.4
Matthews, C.R.5
-
66
-
-
0020475509
-
Calculation of the electric potential in the active site cleft due to alpha-helix dipoles
-
Warwicker J., and Watson H.C. Calculation of the electric potential in the active site cleft due to alpha-helix dipoles. J. Mol. Biol. 157 (1982) 671-679
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 671-679
-
-
Warwicker, J.1
Watson, H.C.2
-
67
-
-
0026124585
-
Electrostatics and diffusion of molecules in solution-simulation with the University of Houston Brownian Dynamics program
-
Davis M.E., Madura J.D., Luty B.A., and McCammon J.A. Electrostatics and diffusion of molecules in solution-simulation with the University of Houston Brownian Dynamics program. Comput. Phys. Commun. 62 (1991) 187-191
-
(1991)
Comput. Phys. Commun.
, vol.62
, pp. 187-191
-
-
Davis, M.E.1
Madura, J.D.2
Luty, B.A.3
McCammon, J.A.4
-
68
-
-
0000945505
-
Computing ionization states of proteins with a detailed charge model
-
Antosiewicz J., Briggs J.M., Elcock A.H., Gilson M. K., and McCammon J.A. Computing ionization states of proteins with a detailed charge model. J. Computat. Chem. 17 (1996) 1633-1644
-
(1996)
J. Computat. Chem.
, vol.17
, pp. 1633-1644
-
-
Antosiewicz, J.1
Briggs, J.M.2
Elcock, A.H.3
Gilson, M. K.4
McCammon, J.A.5
-
69
-
-
32844457567
-
Accurate calculation of hydration free energies using macroscopic solvent models
-
Sitkoff D., Sharp K.A., and Honig B. Accurate calculation of hydration free energies using macroscopic solvent models. J. Phys. Chem. 98 (1994) 1978-1988
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
70
-
-
0027563464
-
On the calculation of pKas in proteins
-
Yang A.S., Gunner M.R., Sampogna R., Sharp K., and Honig B. On the calculation of pKas in proteins. Proteins: Struct. Funct. Genet. 15 (1993) 252-265
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.15
, pp. 252-265
-
-
Yang, A.S.1
Gunner, M.R.2
Sampogna, R.3
Sharp, K.4
Honig, B.5
-
71
-
-
0026612756
-
a values of ionizable groups in bacteriorhodopsin
-
a values of ionizable groups in bacteriorhodopsin. J. Mol. Biol. 224 (1992) 473-486
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 473-486
-
-
Bashford, D.1
Gerwert, K.2
-
72
-
-
0027477251
-
Multiple-site titration and molecular modeling: two rapid methods for computing energies and forces for ionizable groups in proteins
-
Gilson M.K. Multiple-site titration and molecular modeling: two rapid methods for computing energies and forces for ionizable groups in proteins. Proteins: Struct. Funct. Genet. 15 (1993) 266-282
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.15
, pp. 266-282
-
-
Gilson, M.K.1
-
73
-
-
0017429069
-
Areas, volumes, packing and protein structure
-
Richards F.M. Areas, volumes, packing and protein structure. Annu. Rev. Biophys. Bioeng. 6 (1977) 151-176
-
(1977)
Annu. Rev. Biophys. Bioeng.
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
75
-
-
0036228118
-
Distance dependence and salt sensitivity of pairwise, coulombic interactions in a protein
-
Lee K.K., Fitch C.A., and Garcia-Moreno E.B. Distance dependence and salt sensitivity of pairwise, coulombic interactions in a protein. Protein Sci. 11 (2002) 1004-1016
-
(2002)
Protein Sci.
, vol.11
, pp. 1004-1016
-
-
Lee, K.K.1
Fitch, C.A.2
Garcia-Moreno, E.B.3
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