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Volumn 20, Issue 11, 2007, Pages 1353-1363

Genome-wide transcript analysis of Bradyrhizobium japonicum bacteroids in soybean root nodules

Author keywords

GeneChip; Nitrogen fixation; RpoN

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA;

EID: 35348929944     PISSN: 08940282     EISSN: None     Source Type: Journal    
DOI: 10.1094/MPMI-20-11-1353     Document Type: Article
Times cited : (160)

References (41)
  • 1
    • 0030047969 scopus 로고    scopus 로고
    • Two different mechanisms are involved in the heat-shock regulation of chaperonin gene expression in Bradyrhizobium japonicum
    • Babst, M., Hennecke, H., and Fischer, H. M. 1996. Two different mechanisms are involved in the heat-shock regulation of chaperonin gene expression in Bradyrhizobium japonicum. Mol. Microbiol. 19:827-839.
    • (1996) Mol. Microbiol , vol.19 , pp. 827-839
    • Babst, M.1    Hennecke, H.2    Fischer, H.M.3
  • 2
    • 9344251110 scopus 로고    scopus 로고
    • A dual-genome symbiosis chip for coordinate study of signal exchange and development in a prokaryote-host interaction
    • Barnett, M. J., Toman, C. J., Fisher, R. F., and Long, S. R. 2004. A dual-genome symbiosis chip for coordinate study of signal exchange and development in a prokaryote-host interaction. Proc. Natl. Acad. Sci. U.S.A. 101:16636-16641.
    • (2004) Proc. Natl. Acad. Sci. U.S.A , vol.101 , pp. 16636-16641
    • Barnett, M.J.1    Toman, C.J.2    Fisher, R.F.3    Long, S.R.4
  • 4
    • 0031858562 scopus 로고    scopus 로고
    • Expression of the fixR-nifA operon in Bradyrhizobium japonicum depends on a new response regulator, RegR
    • Bauer, E., Kaspar, T., Fischer, H. M., and Hennecke, H. 1998. Expression of the fixR-nifA operon in Bradyrhizobium japonicum depends on a new response regulator, RegR. J. Bacteriol. 180:3853-3863.
    • (1998) J. Bacteriol , vol.180 , pp. 3853-3863
    • Bauer, E.1    Kaspar, T.2    Fischer, H.M.3    Hennecke, H.4
  • 6
    • 33645516750 scopus 로고    scopus 로고
    • Sinorhizobium meliloti differentiation during symbiosis with alfalfa: A transcriptomic dissection
    • Capela, D., Filipe, C., Bobik, C., Batut, J., and Bruand, C. 2006. Sinorhizobium meliloti differentiation during symbiosis with alfalfa: A transcriptomic dissection. Mol. Plant-Microbe Interact. 19:363-372.
    • (2006) Mol. Plant-Microbe Interact , vol.19 , pp. 363-372
    • Capela, D.1    Filipe, C.2    Bobik, C.3    Batut, J.4    Bruand, C.5
  • 7
    • 30744477218 scopus 로고    scopus 로고
    • Functional characterization of the Bradyrhizobium japonicum modA and modB genes involved in molybdenum transport
    • Delgado, M. J., Tresierra-Ayala, A., Talbi, C., and Bedmar, E. J. 2006. Functional characterization of the Bradyrhizobium japonicum modA and modB genes involved in molybdenum transport. Microbiology 152:199-207.
    • (2006) Microbiology , vol.152 , pp. 199-207
    • Delgado, M.J.1    Tresierra-Ayala, A.2    Talbi, C.3    Bedmar, E.J.4
  • 8
    • 4344704870 scopus 로고    scopus 로고
    • Genetic regulation of biological nitrogen fixation
    • Dixon, R., and Kahn, D. 2004. Genetic regulation of biological nitrogen fixation. Nat. Rev. Microbiol. 2:621-631.
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 621-631
    • Dixon, R.1    Kahn, D.2
  • 9
    • 15744389207 scopus 로고    scopus 로고
    • Legume haemoglobins: Symbiotic nitrogen fixation needs bloody nodules
    • Downie, J. A. 2005. Legume haemoglobins: Symbiotic nitrogen fixation needs bloody nodules. Curr. Biol. 15:R196-198.
    • (2005) Curr. Biol , vol.15
    • Downie, J.A.1
  • 10
    • 0034015228 scopus 로고    scopus 로고
    • Deletion analysis of the Escherichia coli taurine and alkanesulfonate transport systems
    • Eichhorn, E., van der Ploeg, J. R., and Leisinger, T. 2000. Deletion analysis of the Escherichia coli taurine and alkanesulfonate transport systems. J. Bacteriol. 182:2687-2695.
    • (2000) J. Bacteriol , vol.182 , pp. 2687-2695
    • Eichhorn, E.1    van der Ploeg, J.R.2    Leisinger, T.3
  • 11
    • 0028108941 scopus 로고
    • Genetic regulation of nitrogen fixation in rhizobia
    • Fischer, H. M. 1994. Genetic regulation of nitrogen fixation in rhizobia. Microbiol Rev. 58:352-386.
    • (1994) Microbiol Rev , vol.58 , pp. 352-386
    • Fischer, H.M.1
  • 12
    • 2942526836 scopus 로고    scopus 로고
    • Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes
    • Gage, D. J. 2004. Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes. Microbiol. Mol. Biol. Rev. 68:280-300.
    • (2004) Microbiol. Mol. Biol. Rev , vol.68 , pp. 280-300
    • Gage, D.J.1
  • 13
    • 0025355880 scopus 로고
    • Proposed regulatory pathway encoded by the nodV and nodW genes, determinants of host specificity in Bradyrhizobium japonicum
    • Göttfert, M., Grob, P., and Hennecke, H. 1990. Proposed regulatory pathway encoded by the nodV and nodW genes, determinants of host specificity in Bradyrhizobium japonicum. Proc. Natl. Acad. Sci. U.S.A. 87:2680-2684.
    • (1990) Proc. Natl. Acad. Sci. U.S.A , vol.87 , pp. 2680-2684
    • Göttfert, M.1    Grob, P.2    Hennecke, H.3
  • 14
    • 0035143664 scopus 로고    scopus 로고
    • Potential symbiosis-specific genes uncovered by sequencing a 410-kilobase DNA region of the Bradyrhizobium japonicum chromosome
    • Göttfert, M., Röthlisberger, S., Kündig, C., Beck, C., Marty, R., and Hennecke, H. 2001. Potential symbiosis-specific genes uncovered by sequencing a 410-kilobase DNA region of the Bradyrhizobium japonicum chromosome. J. Bacteriol. 183:1405-1412.
    • (2001) J. Bacteriol , vol.183 , pp. 1405-1412
    • Göttfert, M.1    Röthlisberger, S.2    Kündig, C.3    Beck, C.4    Marty, R.5    Hennecke, H.6
  • 15
    • 0034058215 scopus 로고    scopus 로고
    • Catabolism of alpha-ketoglutarate by a sucA mutant of Bradyrhizobium japonicum: Evidence for an alternative tricarboxylic acid cycle
    • Green, L. S., Li, Y., Emerich, D. W., Bergersen, F. J., and Day, D. A. 2000. Catabolism of alpha-ketoglutarate by a sucA mutant of Bradyrhizobium japonicum: Evidence for an alternative tricarboxylic acid cycle. J Bacteriol. 182:2838-2844.
    • (2000) J Bacteriol , vol.182 , pp. 2838-2844
    • Green, L.S.1    Li, Y.2    Emerich, D.W.3    Bergersen, F.J.4    Day, D.A.5
  • 16
    • 30044443666 scopus 로고    scopus 로고
    • Design and validation of a partial-genome microarray for transcriptional profiling of the Bradyrhizobium japonicum symbiotic gene region
    • Hauser, F., Lindemann, A., Vuilleumier, S., Patrignani, A., Schlapbach, R., Fischer, H. M., and Hennecke, H. 2006. Design and validation of a partial-genome microarray for transcriptional profiling of the Bradyrhizobium japonicum symbiotic gene region. Mol. Genet. Genomics 275:55-67.
    • (2006) Mol. Genet. Genomics , vol.275 , pp. 55-67
    • Hauser, F.1    Lindemann, A.2    Vuilleumier, S.3    Patrignani, A.4    Schlapbach, R.5    Fischer, H.M.6    Hennecke, H.7
  • 19
    • 0036902831 scopus 로고    scopus 로고
    • Mutational and transcriptional analysis of the type III-secretion system of Bradyrhizobium japonicum
    • Krause, A., Doerfel, A., and Göttfert, M. 2002. Mutational and transcriptional analysis of the type III-secretion system of Bradyrhizobium japonicum. Mol. Plant-Microbe Interact. 15:1228-1235.
    • (2002) Mol. Plant-Microbe Interact , vol.15 , pp. 1228-1235
    • Krause, A.1    Doerfel, A.2    Göttfert, M.3
  • 20
    • 4544275338 scopus 로고    scopus 로고
    • Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011
    • Krol, E., and Becker, A. 2004. Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011. Mol. Genet. Genomics 272:1-17.
    • (2004) Mol. Genet. Genomics , vol.272 , pp. 1-17
    • Krol, E.1    Becker, A.2
  • 21
    • 0026098823 scopus 로고
    • Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN)
    • Kullik, I., Fritsche, S., Knobel, H., Sanjuan, J., Hennecke, H., and Fischer, H. M. 1991. Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN). J. Bacteriol. 173:1125-1138.
    • (1991) J. Bacteriol , vol.173 , pp. 1125-1138
    • Kullik, I.1    Fritsche, S.2    Knobel, H.3    Sanjuan, J.4    Hennecke, H.5    Fischer, H.M.6
  • 22
    • 0037247233 scopus 로고    scopus 로고
    • Metabolism of Rhizobium bacteroids
    • Lodwig, E. M., and Poole, P. 2003. Metabolism of Rhizobium bacteroids. Crit. Rev. Plant Sci. 22:37-78.
    • (2003) Crit. Rev. Plant Sci , vol.22 , pp. 37-78
    • Lodwig, E.M.1    Poole, P.2
  • 23
    • 0037224696 scopus 로고    scopus 로고
    • Nodulation gene regulation in Bradyrhizobium japonicum: A unique integration of global regulatory circuits
    • Loh, J., and Stacey, G. 2003. Nodulation gene regulation in Bradyrhizobium japonicum: A unique integration of global regulatory circuits. Appl. Environ. Microbiol. 69:10-17.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 10-17
    • Loh, J.1    Stacey, G.2
  • 24
    • 0035140908 scopus 로고    scopus 로고
    • Genes and signals in the Rhizobium-legume symbiosis
    • Long, S. R. 2001. Genes and signals in the Rhizobium-legume symbiosis. Plant Physiol. 125:69-72.
    • (2001) Plant Physiol , vol.125 , pp. 69-72
    • Long, S.R.1
  • 25
    • 0042029624 scopus 로고    scopus 로고
    • Rhizobium leguminosarum biovar viciae 1-aminocyclopropane-1-carboxylate deaminase promotes nodulation of pea plants
    • Ma, W., Guinel, F. C., and Glick, B. R. 2003. Rhizobium leguminosarum biovar viciae 1-aminocyclopropane-1-carboxylate deaminase promotes nodulation of pea plants. Appl. Environ. Microbiol. 69:4396-4402.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 4396-4402
    • Ma, W.1    Guinel, F.C.2    Glick, B.R.3
  • 26
    • 0023250945 scopus 로고
    • Bradyrhizobium japonicum mutants defective in nitrogen fixation and molybdenum metabolism
    • Maier, R. J., Graham, L., Keefe, R. G., Pihl, T., and Smith, E. 1987. Bradyrhizobium japonicum mutants defective in nitrogen fixation and molybdenum metabolism. J. Bacteriol. 169:2548-2554.
    • (1987) J. Bacteriol , vol.169 , pp. 2548-2554
    • Maier, R.J.1    Graham, L.2    Keefe, R.G.3    Pihl, T.4    Smith, E.5
  • 27
    • 0035109121 scopus 로고    scopus 로고
    • Phosphatidylcholine levels in Bradyrhizobium japonicum membranes are critical for an efficient symbiosis with the soybean host plant
    • Minder, A. C., de Rudder, K. E., Narberhaus, F., Fischer, H. M., Hennecke, H., and Geiger, O. 2001. Phosphatidylcholine levels in Bradyrhizobium japonicum membranes are critical for an efficient symbiosis with the soybean host plant. Mol. Microbiol. 39:1186-1198.
    • (2001) Mol. Microbiol , vol.39 , pp. 1186-1198
    • Minder, A.C.1    de Rudder, K.E.2    Narberhaus, F.3    Fischer, H.M.4    Hennecke, H.5    Geiger, O.6
  • 30
    • 0033914130 scopus 로고    scopus 로고
    • Carbon and nitrogen metabolism in Rhizobium
    • Poole, P. S., and Allaway, D. A. 2000. Carbon and nitrogen metabolism in Rhizobium. Adv. Microb. Physiol. 43:117-163.
    • (2000) Adv. Microb. Physiol , vol.43 , pp. 117-163
    • Poole, P.S.1    Allaway, D.A.2
  • 32
    • 33646010042 scopus 로고    scopus 로고
    • Metabolic changes of rhizobia in legume nodules
    • Prell, J., and Poole, P. 2006. Metabolic changes of rhizobia in legume nodules. Trends Microbiol. 14:161-168.
    • (2006) Trends Microbiol , vol.14 , pp. 161-168
    • Prell, J.1    Poole, P.2
  • 33
    • 0020807906 scopus 로고
    • RNA polymerase from Rhizobium japonicum
    • Regensburger, B., and Hennecke, H. 1983. RNA polymerase from Rhizobium japonicum. Arch. Microbiol. 135:103-109.
    • (1983) Arch. Microbiol , vol.135 , pp. 103-109
    • Regensburger, B.1    Hennecke, H.2
  • 34
    • 30844432187 scopus 로고    scopus 로고
    • The iron control element, acting in positive and negative control of iron-regulated Bradyrhizobium japonicum genes, is a target for the Irr protein
    • Rudolph, G., Semini, G., Hauser, F., Lindemann, A., Friberg, M., Hennecke, H., and Fischer, H. M. 2006. The iron control element, acting in positive and negative control of iron-regulated Bradyrhizobium japonicum genes, is a target for the Irr protein. J. Bacteriol. 188:733-744.
    • (2006) J. Bacteriol , vol.188 , pp. 733-744
    • Rudolph, G.1    Semini, G.2    Hauser, F.3    Lindemann, A.4    Friberg, M.5    Hennecke, H.6    Fischer, H.M.7
  • 35
    • 27744579098 scopus 로고    scopus 로고
    • Global protein expression pattern of Bradyrhizobium japonicum bacteroids: A prelude to functional proteomics
    • Sarma, A. D., and Emerich, D. W. 2005. Global protein expression pattern of Bradyrhizobium japonicum bacteroids: A prelude to functional proteomics. Proteomics 5:4170-4184.
    • (2005) Proteomics , vol.5 , pp. 4170-4184
    • Sarma, A.D.1    Emerich, D.W.2
  • 36
    • 33744477353 scopus 로고    scopus 로고
    • A comparative proteomic evaluation of culture-grown vs nodule-isolated Bradyrhizobium japonicum
    • Sarma, A. D., and Emerich, D. W. 2006. A comparative proteomic evaluation of culture-grown vs nodule-isolated Bradyrhizobium japonicum. Proteomics 6:3008-3028.
    • (2006) Proteomics , vol.6 , pp. 3008-3028
    • Sarma, A.D.1    Emerich, D.W.2
  • 37
    • 0041335297 scopus 로고    scopus 로고
    • Disparate oxygen responsiveness of two regulatory cascades that control expression of symbiotic genes in Bradyrhizobium japonicum
    • Sciotti, M. A., Chanfon, A., Hennecke, H., and Fischer, H. M. 2003. Disparate oxygen responsiveness of two regulatory cascades that control expression of symbiotic genes in Bradyrhizobium japonicum. J. Bacteriol. 185:5639-5642.
    • (2003) J. Bacteriol , vol.185 , pp. 5639-5642
    • Sciotti, M.A.1    Chanfon, A.2    Hennecke, H.3    Fischer, H.M.4
  • 39
    • 33645322140 scopus 로고    scopus 로고
    • Bradyrhizobium japonicum senses iron through the status of haem to regulate iron homeostasis and metabolism
    • Yang, J., Sangwan, I., Lindemann, A., Hauser, F., Hennecke, H., Fischer, H. M., and O'Brian, M. R. 2006a. Bradyrhizobium japonicum senses iron through the status of haem to regulate iron homeostasis and metabolism. Mol. Microbiol. 60:427-437.
    • (2006) Mol. Microbiol , vol.60 , pp. 427-437
    • Yang, J.1    Sangwan, I.2    Lindemann, A.3    Hauser, F.4    Hennecke, H.5    Fischer, H.M.6    O'Brian, M.R.7
  • 40
    • 33750615543 scopus 로고    scopus 로고
    • The Bradyrhizobium japonicum Fur protein is an iron-responsive regulator in vivo
    • Yang, J., Sangwan, I., and O'Brian M, R. 2006b. The Bradyrhizobium japonicum Fur protein is an iron-responsive regulator in vivo. Mol Genet Genomics 276:555-564.
    • (2006) Mol Genet Genomics , vol.276 , pp. 555-564
    • Yang, J.1    Sangwan, I.2    O'Brian, M.R.3


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