Distinguish dengue virus serotypes via codon usage patterns

2007 1st International Conference on Bioinformatics and Biomedical Engineering, ICBBE

Volumn , Issue , 2007, Pages 1328-1330

  Su, Ming Wei ^a   Chu, Woei C ^a   Yuan, Hanna S ^b  

^a NATIONAL YANG MING UNIVERSITY   (Taiwan)

^b INSTITUTE OF MOLECULAR BIOLOGY   (Taiwan)

Author keywords

Codon usage preference; Neural network; Virus

Indexed keywords

BIOCHEMISTRY; GENES; NEURAL NETWORKS; RNA;

DENGUE VIRUS; MATRIX FORMAT; RELATIVE SYNONYMOUS CODON USAGE (RSCU);

VIRUSES;

EID: 35348919433     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2007.343     Document Type: Conference Paper

References (11)

1. C.G. Kurland, "Major codon preference: theme and variations", Biochem Soc Trans, 1993, pp. 841-845.
2. P.M. Sharp,and W.H. Li, "Codon usage and genome evolution", Curr Opin Genet Dev, 1994, pp. 851-860.
3. R. Grantham, C. Gautier, R. Mercier, and A. Pave, "Codon catalog usage and the genome hypothesis", Nucleic Acids Res, 1980, pp. 49-62.
4. P.M. Sharp, T.M.F. Tuohy, and K.R. Mosurski, "Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes", Nucleic Acids Res, 1986, pp. 5125-5143.
5. T. Ikemura, "Codon usage and tRNA content in unicellular and multicellular organisms", Mol Biol Evol, 1985, pp. 13-34.
6. S. Karlin, and J. Mrazek, "What drives codon choices in human genes?", J Mol Biol, 1996, pp. 459-472.
7. G.M. Jenkins, and E.C. Holmes, "The extend of codon usage bias in human RNA viruses and its evolutionary origin", Virus Res, 2003, pp. 1-7
8. G.M. Jenkins, M. Pagel, E.A. Gould, P.M. dA Zanotto, and E.C. Holms, "Evolution of base composition and codon usage bias in the genus flavivirus", J Mol Evol, 2001, pp. 383-390
9. T. Zhou, W. Gu, J. Ma, X. Sun, and Z. Lu, "Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses", BioSystems, 2005, pp. 77-86.
10. W. Gu, T. Zhou, J. Ma, X. Sun, and Z. Lu, "Analysis of synonymous codon usage in SARS coronavirus and other viruses in the Nadovirales", Virus Res, 2004, pp. 155-161.
11. G. Perriere, and J. Thioulouse, "Use and misuse of correspondence analysis in codon usage studies", Nucleic Acids Res, 2002, pp. 4548-4555.