Comparing similar ordered trees in linear-time

Journal of Discrete Algorithms

Volumn 5, Issue 4 SPEC. ISS., 2007, Pages 696-705

  Touzet, Hélène ^a  

^a UNIV LILLE   (France)

Author keywords

Computational biology; Edit distance; Ordered trees

Indexed keywords

COMPUTATION THEORY; GRAPHIC METHODS; TREES (MATHEMATICS);

COMPUTATIONAL BIOLOGY; EDIT DISTANCES; LINEAR TIME ALGORITHMS; ORDERED TREES; ZHANG-SHASHA ALGORITHMS;

ALGORITHMS;

EID: 35348899520     PISSN: 15708667     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jda.2006.07.002     Document Type: Article

References (12)

1. Tai K. The tree-to-tree correction problem. Journal of the Association for Computing Machinery 26 (1979) 422-433
2. Zhang K., and Shasha D. Simple fast algorithms for the editing distance between trees and related problems. SIAM Journal of Computing 18 6 (1989) 1245-1262
3. P. Klein, Computing the edit-distance between unrooted ordered trees, in: 6th European Symposium on Algorithms, 1998, pp. 91-102
4. Dulucq S., and Tichit L. RNA secondary structure comparison: exact analysis of the Zhang-Shasha tree edit algorithm. Theoretical Computer Science 306 1-3 (2003) 471-484
5. Dulucq S., and Touzet H. Analysis of tree edit distance algorithms. Combinatorial Pattern Matching. Lecture Notes in Computer Science vol. 2676 (2003), Springer, Berlin 83-95
6. Jiang T., Wang L., and Zhang K. Alignment of trees-an alternative to tree edit. Theoretical Computer Science 143 1 (1995) 137-148
7. M. Höchsmann, T. Töller, R. Giegerich, S. Kurtz, Local similarity in RNA secondary structures, in: IEEE Bioinformatics Conference, 2003, pp. 159-168
8. Jansson J., Hieu N.T., and Sung W.-K. Local gapped subforest alignment and its application in finding RNA structural motifs. ISAAC. Lecture Notes in Computer Science vol. 3341 (2004), Springer, Berlin 569-580
9. Jansson J., and Lingas A. A fast algorithm for optimal alignment between similar ordered trees. Fundamenta Informaticae 56 1,2 (2003) 105-120
10. S. Chawathe, Comparing hierarchical data in external memory, in: Twenty-Fifth International Conference on Very Large Data Bases, 1999, pp. 90-101
11. Valiente G. Algorithms on Trees and Graphs (2002), Springer, Berlin
12. Setubal J., and Meidanis J. Introduction to Computational Biology (1997), International Thomson Publishing Company