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Volumn , Issue , 2007, Pages 222-225

A characteristic sequences and normalized euclidean distance based method for RNA secondary structures comparison

Author keywords

Hierarchical clustering; Normalized Euclidean distance; RNA secondary structure

Indexed keywords

COMPUTATIONAL GEOMETRY; DATA REDUCTION; HIERARCHICAL SYSTEMS; MOLECULAR STRUCTURE; PROBLEM SOLVING;

EID: 35348849121     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2007.60     Document Type: Conference Paper
Times cited : (4)

References (21)
  • 1
    • 0024061490 scopus 로고
    • An algorithm for comparing multiple RNA secondary structures
    • B. Shapiro, "An algorithm for comparing multiple RNA secondary structures". Comput. Appl. Biosci., Vol.4, No.3, 1988, pp. 387-393.
    • (1988) Comput. Appl. Biosci , vol.4 , Issue.3 , pp. 387-393
    • Shapiro, B.1
  • 2
    • 0025187499 scopus 로고
    • Comparing multiple RNA secondary structures using tree comparisons
    • B. Shapiro and K. Zhang, "Comparing multiple RNA secondary structures using tree comparisons". Comput. Appl. Biosci, Vol.6, No.4, 1990.pp.309-318.
    • (1990) Comput. Appl. Biosci , vol.6 , Issue.4 , pp. 309-318
    • Shapiro, B.1    Zhang, K.2
  • 3
    • 0024386096 scopus 로고
    • Tree graphs of RNA secondary structures and their comparisons
    • S.Y. Le, R Nussinov and J.V. Maizel, "Tree graphs of RNA secondary structures and their comparisons". Comput. Biomed. Res, Vol.22, 1989, pp. 461-473.
    • (1989) Comput. Biomed. Res , vol.22 , pp. 461-473
    • Le, S.Y.1    Nussinov, R.2    Maizel, J.V.3
  • 4
    • 0024348264 scopus 로고
    • RNA secondary structures: Comparisons and determination of frequently recurring substructures by consensus
    • S.Y. Le, J. Owens, R. Nussinov, J.H. Chen, B. Shapiro and J.V. Maizel, "RNA secondary structures: comparisons and determination of frequently recurring substructures by consensus". Comput. Appl. Biosci, Vol.5,1989, pp.205-210.
    • (1989) Comput. Appl. Biosci , vol.5 , pp. 205-210
    • Le, S.Y.1    Owens, J.2    Nussinov, R.3    Chen, J.H.4    Shapiro, B.5    Maizel, J.V.6
  • 5
    • 0041387617 scopus 로고    scopus 로고
    • RNA Secondary structure comparison: Exact analysis of the Zhang - Shasha tree edit algorithm
    • S. Dulucq and L. Tichit, "RNA Secondary structure comparison: exact analysis of the Zhang - Shasha tree edit algorithm". Theoretical. Computer Science. Vol.306, 2003, pp.471 - 484.
    • (2003) Theoretical. Computer Science , vol.306 , pp. 471-484
    • Dulucq, S.1    Tichit, L.2
  • 6
    • 5044242515 scopus 로고    scopus 로고
    • Alignment of RNA base pairing probability matrices
    • I.L. Hofacker, S.H.F. Bernhart and P.F. Stadler, "Alignment of RNA base pairing probability matrices". Bioinformatics. Vol.20, 2004, pp. 2222-2227.
    • (2004) Bioinformatics , vol.20 , pp. 2222-2227
    • Hofacker, I.L.1    Bernhart, S.H.F.2    Stadler, P.F.3
  • 8
    • 0027982394 scopus 로고
    • RNAlign program: Alignment of RNA sequences using both primary and secondary structures
    • F. Corpet and B. Michot, "RNAlign program: alignment of RNA sequences using both primary and secondary structures". Comput. Appl. Biosci.Vol.10, 1995, pp. 389-399.
    • (1995) Comput. Appl. Biosci , vol.10 , pp. 389-399
    • Corpet, F.1    Michot, B.2
  • 9
    • 33751162430 scopus 로고    scopus 로고
    • A method for rapid similarity analysis of RNA secondary structures
    • Liu, N. and Wang, T.M. "A method for rapid similarity analysis of RNA secondary structures". BMC Bioinformatics. Vol. 7, 2006, pp. 493-503.
    • (2006) BMC Bioinformatics , vol.7 , pp. 493-503
    • Liu, N.1    Wang, T.M.2
  • 10
    • 35348854082 scopus 로고    scopus 로고
    • Comparing RNA secondary structures based on their linear representations
    • N. Liu and T.M. Wang, "Comparing RNA secondary structures based on their linear representations". WSEAS transactions on biology and biomedicine. Vol.3, 2006, pp. 226-230.
    • (2006) WSEAS transactions on biology and biomedicine , vol.3 , pp. 226-230
    • Liu, N.1    Wang, T.M.2
  • 11
    • 0018629864 scopus 로고
    • Nucleotide sequence of the 3-nonooding region of alfalfa mosaic virus RNA 4 and its homology with the genomic RNAs
    • E.C. Koper-Zwarthoff, F.T. Brederode, P. Walstra and J.F. Bol, "Nucleotide sequence of the 3-nonooding region of alfalfa mosaic virus RNA 4 and its homology with the genomic RNAs". Nucleic Acids Research, Vol.7, 1979, pp.1887-1900.
    • (1979) Nucleic Acids Research , vol.7 , pp. 1887-1900
    • Koper-Zwarthoff, E.C.1    Brederode, F.T.2    Walstra, P.3    Bol, J.F.4
  • 12
    • 0028965208 scopus 로고
    • The complete nucleotide sequence of RNA 3 of citrus leaf rugose and citrus variegation ilarviruses
    • Scott, S.W. and Ge, X. "The complete nucleotide sequence of RNA 3 of citrus leaf rugose and citrus variegation ilarviruses". J. Gen. Virol. Vol.76, 1995, pp. 957-963
    • (1995) J. Gen. Virol , vol.76 , pp. 957-963
    • Scott, S.W.1    Ge, X.2
  • 13
    • 0018945316 scopus 로고
    • Nucleotide sequence of the putative recognition site for coat protein in the RNAs of alfalfa mosaic virus and tobacco streak virus
    • E.C. Koper-Zwarthoff, F.T. Brederode, P. Walstra and J.F. Bol, "Nucleotide sequence of the putative recognition site for coat protein in the RNAs of alfalfa mosaic virus and tobacco streak virus". Nucleic Acids Research, Vol.8, 1980, pp.3307-3318.
    • (1980) Nucleic Acids Research , vol.8 , pp. 3307-3318
    • Koper-Zwarthoff, E.C.1    Brederode, F.T.2    Walstra, P.3    Bol, J.F.4
  • 15
    • 0028141810 scopus 로고
    • The nucleotide sequence of apple mosaic virus coat protein gene has no similarity with other Bromoviridae coat protein genes
    • R.H. Alrefai, P.J. Shicl and L.L. Domier, C.J. D'Arcy, P.H. Berger and S.S. Korban, "The nucleotide sequence of apple mosaic virus coat protein gene has no similarity with other Bromoviridae coat protein genes". J. Gen. Virol. Vol.75, 1994, pp.2847-2850.
    • (1994) J. Gen. Virol , vol.75 , pp. 2847-2850
    • Alrefai, R.H.1    Shicl, P.J.2    Domier, L.L.3    D'Arcy, C.J.4    Berger, P.H.5    Korban, S.S.6
  • 16
    • 0029041236 scopus 로고
    • The complete nucleotide sequence of the RNA 3 of lilac ring mottle ilarvirus
    • S.W. Scott and X. Ge, "The complete nucleotide sequence of the RNA 3 of lilac ring mottle ilarvirus". J. Gen. Virol. Vol.76, 1995, pp.1801-1806.
    • (1995) J. Gen. Virol , vol.76 , pp. 1801-1806
    • Scott, S.W.1    Ge, X.2
  • 17
    • 0028236726 scopus 로고
    • The Complete Nucleotide Sequence of Prune Dwarf Ilarvirus RNA 3: Implications for Coat Protein Activation of Genome Replication in Ilarviruses
    • E.J. Bachman, S.W. Scott, G. Xin and V.B. Vance, "The Complete Nucleotide Sequence of Prune Dwarf Ilarvirus RNA 3: Implications for Coat Protein Activation of Genome Replication in Ilarviruses". Virology. Vol.201, 1994, pp. 127-131.
    • (1994) Virology , vol.201 , pp. 127-131
    • Bachman, E.J.1    Scott, S.W.2    Xin, G.3    Vance, V.B.4
  • 18
    • 0028214686 scopus 로고
    • Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3' untranslated region of alfalfa mosaic virus RNA 4
    • F. Houser-Scott, M.L. Baer, KF. Liem Jr, J.M. Cai, and L. Gehrke, "Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3' untranslated region of alfalfa mosaic virus RNA 4". J. Virol .Vol.68,1994, pp.2194-2205.
    • (1994) J. Virol , vol.68 , pp. 2194-2205
    • Houser-Scott, F.1    Baer, M.L.2    Liem Jr, K.F.3    Cai, J.M.4    Gehrke, L.5
  • 19
    • 35348821561 scopus 로고    scopus 로고
    • EMBL/GenBank/DDBJ databases. Accession no. X86352.
    • EMBL/GenBank/DDBJ databases. Accession no. X86352.
  • 20
    • 0018369831 scopus 로고
    • Evolutionary change in 5S rRNA secondary structure and a phylogenetic tree of 54 5S rRNA species
    • H. Hiro and S. Osawa, "Evolutionary change in 5S rRNA secondary structure and a phylogenetic tree of 54 5S rRNA species". Proc. Natl. Acad. Sci USA, Vol.76, 1979, pp. 381-385.
    • (1979) Proc. Natl. Acad. Sci USA , vol.76 , pp. 381-385
    • Hiro, H.1    Osawa, S.2
  • 21
    • 0022516669 scopus 로고
    • Evolutionary change in 5S rRNA secondary structure and a phylogenetic tree of 352 5S rRNA species
    • H. Hiro and S. Osawa, "Evolutionary change in 5S rRNA secondary structure and a phylogenetic tree of 352 5S rRNA species". Proc. Natl. Acad Sci USA. Vol.19, 1986, pp. 163-172.
    • (1986) Proc. Natl. Acad Sci USA , vol.19 , pp. 163-172
    • Hiro, H.1    Osawa, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.