Species richness and community composition of mat-forming ectomycorrhizal fungi in old- and second-growth Douglas-fir forests of the HJ Andrews Experimental Forest, Oregon, USA

Mycorrhiza

Volumn 17, Issue 8, 2007, Pages 633-645

  Dunham, Susie M ^a   Larsson, Karl Henrik ^b   Spatafora, Joseph W ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

Ectomycorrhizal mat; Fungal community; Hysterangium; Piloderma; Ramaria; Soil microorganisms

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA;

ABUNDANCE; AGE CLASS; COMMUNITY COMPOSITION; CONIFEROUS FOREST; ECTOMYCORRHIZA; FUNGUS; MICROBIAL MAT; MOLECULAR ANALYSIS; RHIZOSPHERE; SAMPLING; SOIL MICROORGANISM; SPECIES RICHNESS;

ARTICLE; CHEMISTRY; DOUGLAS FIR; ECOSYSTEM; GENETIC VARIABILITY; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; MOLECULAR GENETICS; MYCORRHIZA; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT ROOT; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; TREE; UNITED STATES;

BASE SEQUENCE; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; ECOSYSTEM; MOLECULAR SEQUENCE DATA; MYCORRHIZAE; OREGON; PHYLOGENY; PLANT ROOTS; POLYMERASE CHAIN REACTION; PSEUDOTSUGA; SEQUENCE ALIGNMENT; SOIL MICROBIOLOGY; TREES; VARIATION (GENETICS);

H.J. ANDREWS EXPERIMENTAL FOREST; NORTH AMERICA; OREGON; UNITED STATES;

FUNGI; HYSTERANGIUM; PILODERMA; PSEUDOTSUGA; PSEUDOTSUGA MENZIESII; RAMARIA;

EID: 35348828544     PISSN: 09406360     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00572-007-0141-6     Document Type: Article

References (70)

1. Agerer R (2001) Exploration types of ectomycorrhizae: a proposal to classify ectomycorrhizal mycelial systems according to their patterns of differentiation and putative ecological importance. Mycorrhiza 11:107-114
2. Altschul SF, Madden TL, Schaffer AA et al (1997) Gapped BLAST and PSI-BLAST-a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
3. Arocena JM, Göttlein A, Raidl S (2004) Spatial changes of soil solution and mineral composition in the rhizosphere of Norway-spruce seedlings colonized by Piloderma croceum. Journal of Plant Nutrition and Soil Science 167:479-486
4. Binder M, Hibbett DS (2002) Higher-level phylogenetic relationships of Homobasidiomycetes (mushroom forming fungi) inferred from four rDNA regions. Mol Phylogenet Evol 22:76-90
5. Binder M, Hibbett DS, Larsson K-H et al (2005) The phylogenetic distribution of resupinate forms across the major clades of mushroom forming fungi (Homobasidiomycetes). Syst Biodiv 3:113-157
6. Blum JD, Klaue A, Nezat CA et al (2002) Mycorrhizal weathering of apatite as an important calcium source in base-poor forest ecosystems. Nature 417:729-731
7. Bruns TD, Vilgalys R, Barns SM et al (1992) Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Mol Phylogenet Evol 1:231-241
8. Castellano MA (1988) The taxonomy of the genus Hysteragium (Basidiomycotina, Hysterangiaceae) with notes on its ecology. Ph.D. thesis, Oregon State University
9. Cline ET, Ammirati JF, Edmonds RL (2005) Does proximity to mature trees influence ectomycorrhizal fungus communities of Douglas-fir seedlings? New Phytol 166:993-1009
10. Colwell RK (2005) EstimateS: Statistical estimation of species richness and shared species from samples. Version 7.5. User's Guide and application published at: http://purl.oclc.org/estimates
11. Colwell RK, Mao CX, Chang J (2004) Interpolating, extrapolating, and comparing incidence-based species accumulation curves. Ecology 85:2717-2727
12. Cromack K Jr, Sollins P, Graustein WC et al (1979) Calcium oxalate accumulation and soil weathering in mats of the ectomycorrhizal fungus Hysterangium crassum (Tul. and Tul.) Fischer. Soil Biol Biochem 11:463-468
13. Cromack K Jr, Fichter BL, Moldenke AM, Entry JA, Ingham ER (1988) Interactions between soil animals and ectomycorrhizal fungal mats. Agric Ecosyst Environ 24:161-168
14. Dighton J, Mason PA (1985) Mycorrhizal dynamics during forest tree development. In: Moore D, Casselton LA, Wood DA, Frankland JC (eds) Developmental ecology of higher fungi. Cambridge University Press, Cambridge, Great Britain, pp 117-139
15. Douglas RB, Parker VT, Cullings KW (2005) Belowground ectomycorrhizal community structure of mature lodgepole pine and mixed conifer stands in Yellowstone National Park. For Ecol Manag 208:303-317
16. Dunham SM, O'Dell TE, Molina R (2003) Analysis of nrDNA sequences and microsatellite allele frequencies reveals a cryptic chanterelle species Cantharellus cascadensis sp. nov. from the American Pacific Northwest. Mycol Res 107:1163-1177
17. Eaton GK, Ayres MP (2002) Plasticity and constraint in growth and protein mineralization of ectomycorrhizal fungi under stimulated nitrogen deposition. Mycologia 94:921-932
18. Epsy M, Babbitt B (1994) Record of decision for amendments to forest service and bureau of land management planning documents within the range of the northern spotted owl. US Department of Agriculture, Forest Service and US Department of the Interior, Bureau of Land Management, Washington, DC
19. Eriksson J, Hjortstam K, Ryvarden L (1984) The Corticiaceae of North Europe, vol 7. Fungiflora, Oslo, Norway
20. Erland S, Taylor AFS (1999) Resupinate ectomycorrhizal fungal genera. In: Cairney JWG, Chambers SM (eds) Ectomycorrhizal fungi. Key genera in profile. Springer, Berlin, pp 347-358
21. Franklin JF (1979) Vegetation of the Douglas-fir region. In: Heilman PE, Anderson HW, Baumgartner DM (eds) Forest soils of the Douglas-fir region. Washington State University, Cooperative Extension, Pullman, Washington, pp 93-112
22. Franklin JF, Bledsoe CS, Callahan JT (1990) Contributions of the long-term ecological research program. Bioscience 40:509-523
23. Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes-applications to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118
24. Gotelli NJ, Colwell RK (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4:379-391
25. Griffiths RP, Caldwell BA (1992) Mycorrhizal mat communities in forest soils. In: Read DJ, Lewis DH, Fitter AH, Alexander IJ (eds) Mycorrhizas in ecosystems. Cambridge University Press, Cambridge, pp 98-105
26. Griffiths RP, Caldwell BA, Cromack K Jr, Morita RY (1990) Douglas-fir forest soils colonized by ectomycorrhizal mats. I. Seasonal variation in nitrogen chemistry and nitrogen cycle transformation rates. Can J For Res 20:211-218
27. Griffiths RP, Castellano MA, Caldwell BA (1991a) Hyphal mats formed by two ectomycorrhizal fungi and their association with Douglas-fir seedlings: a case study. Plant Soil 134:255-259
28. Griffiths RP, Caldwell BA, Ingham ER, Castellano MA, Cromack K Jr (1991b) Comparison of microbial activity in ectomycorrhizal mat communities in Oregon and California. Biol Fertil Soils 11:196-202
29. Griffiths RP, Baham JE, Caldwell BA (1994) Soil solution chemistry of ectomycorrhizal mats in forest soil. Soil Biol Biochem 26:331-337
30. Griffiths RP, Chadwick AC, Robatzek M, Schauer K, Schaffroth K (1995) Associations of ectomycorrhizal mats with Pacific yew and other understory trees in coniferous forests. Plant Soil 173:343-347
31. Griffiths RP, Bradshaw GA, Marks B, Lienkaemper GW (1996) Spatial distribution of ectomycorrhizal mats in coniferous forests of the Pacific Northwest, USA. Plant Soil 180:147-158
32. Hagerberg D, Pallon J, Wallander H (2005) The elemental content in the mycelium of the ectomycorrhizal fungus Piloderma sp. during colonization of hardened wood ash. Mycorrhiza 15:387-392
33. Hall TA (1999) Bioedit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
34. Hibbett DS, Pine EM, Langer E, Langer G, Donoghue MJ (1997) Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proc Natl Acad Sci USA 94:12002-12006
35. Hibbett DS, Gilbert L-B, Donoghue MJ (2000) Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature 407:506-508
36. Hintikka V, Naykki O (1967) Notes on the effects of the fungus Hydnellum ferrugineum (Fr.) Karst. on forest soil and vegetation. Commun Inst For Fenn 62:1-22
37. Horton TR (2002) Molecular approaches to ectomycorrhizal diversity studies: variation in ITS at a local scale. Plant Soil 244:29-39
38. Horton TR, Bruns TD (2001) The molecular revolution in ectomycorrhizal ecology: peeking into the black box. Mol Ecol 10:1855-1871
39. Horton TR, Molina R, Hood K (2005) Douglas-fir ectomycorrhizae in 40 and 400 year-old stands: mycobiont availability to late successional western hemlock. Mycorrhiza 15:393-403
40. Humpert AJ, Muench EL, Giachini AJ, Castellano MA, Spatafora JW (2001) Molecular phylogenetics of Ramaria and related genera: evidence from nuclear large subunit and mitochondrial small subunit rDNA sequences. Mycologia 93:465-477
41. Hunt GA, Trappe JM (1987) Seasonal hypogeous sporocarp production in a western Oregon Douglas-fir stand. Can J Bot 65:438-445
42. Hutchinson LJ (1990) Studies on the systematics of ectomycorrhizal fungi in axenic culture. II. The enzymatic degradation of selected carbon and nitrogen compounds. Can J Bot 68:1522-1530
43. Ingham ER, Griffiths RP, Cromack K, Entry JA (1991) Comparison of direct versus fumigation-flush microbial biomass estimates from ectomycorrhizal mat and non-mat soils. Soil Biol Biochem 23:465-472
44. Kårén O (1997) Effects of air pollution and forest regeneration methods on the community structure of ectomycorrhizal fungi. Ph.D. thesis, Swedish University of Agricultural Sciences
45. Kranabetter JM, Friesen J, Gamiet S, Kroeger P (2005) Ectomycorrhizal mushroom distribution by stand age in western hemlock-lodgepole pine forests of northwestern British Columbia. Can J For Res 35:1527-1539
46. Landeweert R, Leeflang P, Kuyper TW et al (2003) Molecular identification of ectomycorrhizal mycelium in soil horizons. Appl Environ Microbiol 69:327-333
47. Larsson K-H, Larsson E, Kõljalg U (2004) High phylogenetic diversity among corticioid homobasidiomycetes. Mycol Res 108:983-1002
48. Lilleskov EA, Fahey TJ, Horton TR, Lovett GM (2002) Belowground ectomycorrhizal fungal community change over a nitrogen deposition gradient in Alaska. Ecology 83:104-115
49. Lilleskov EA, Bruns TD, Horton TR, Taylor DL, Grogan P (2004) Detection of forest stand-level spatial structure in ectomycorrhizal communities. FEMS Microbiol Ecol 49:319-332
50. Lindahl BD, Taylor AFS (2004) Occurrence of N-acetylhexosaminidase- encoding genes in ectomycorrhizal basidiomycetes. New Phytol 164:193-199
51. Luoma DL, Frenkel RE, Trappe JM (1991) Fruiting of hypogeous fungi in Oregon Douglas-fir forests: seasonal and habitat variation. Mycologia 83:335-353
52. Mahmood S, Finlay RD, Fransson A-M, Wallander H (2003) Effects of hardened wood ash on microbial activity, plant growth and nutrient uptake by ectomycorrhizal spruce seedlings. FEMS Microbiol Ecol 43:121-131
53. Moncalvo J-M, Nilsson RH, Koster B et al (2006) The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods. Mycologia 98:937-948
54. Näsholm T, Ekbald A, Nordin A, Giesler R, Högberg M, Högberg P (1998) Boreal plants take up organic nitrogen. Nature 392:914-916
55. Nilsson RH, Larsson K-H, Larsson E, Kõljalg U (2006) Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota). Mycol Res 110:1426-1432
56. Nouhra ER, Horton TR, Cazares E, Castellano M (2005) Morphological and molecular characterization of selected Ramaria mycorrhizae. Mycorrhiza 15:55-59
57. O'Brien HE, Parrent JL, Jackson JA, Moncalvo JM, Vilgalys R (2005) Fungal community analysis by large-scale sequencing of environmental samples. Appl Environ Microbiol 71:5544-5550
58. Perez-Moreno J, Read DJ (2000) Mobilization and transfer of nutrients from litter to tree seedlings via the vegetative mycelium of ectomycorrhizal plants. New Phytol 145:301-309
59. Rosling A, Landeweert R, Lindahl B et al (2003) Vertical distribution of ectomycorrhizal fungal taxa in a podzol soil profile. New Phytol 159:775-783
60. Schubert R, Raidl S, Funk R et al (2003) Quantitative detection of agar-cultivated and rhizotron-grown Piloderma croceum Erikss. & Hjortst. by ITS1-based fluorescent PCR. Mycorrhiza 13:159-165
61. Smith SE, Read DJ (1997) Mycorrhizal symbiosis, 2nd edn. Academic, New York
62. Smith JE, Molina R, Huso MMP, Larsen MJ (2000) Occurrence of Piloderma fallax in young, rotation-age, and old-growth stands of Douglas-fir (Pseudotsuga menziesii) in the Cascade Range of Oregon, USA. Can J Bot 78:995-1001
63. Smith JE, Molina R, Huso MMP et al (2002) Species richness, abundance, and composition of hypogeous and epigeous ectomycorrhizal fungal sporocarps in young, rotation-age, and old-growth stands of Douglas fir (Pseudotsuga menziesii) in the Cascade Range of Oregon, USA. Can J Bot 80:186-204
64. Smith JE, McKay D, Brenner G, McIvers J, Spatafora JW (2005) Early impacts of forest restoration treatments on the ectomycorrhizal fungal community and fine root biomass in a mixed conifer forest. J Appl Ecol 42:526-535
65. Swofford DL (2002) PAUP*4.10b: phylogenetic analysis using parsimony (*and other methods). Sinauer, Sunderland, MA, USA
66. Tedersoo L, Koljalg U, Hallenberg N, Larsson K-H (2003) Fine scale distribution of ectomycorrhizal fungi and roots across substrate layers including coarse woody debris in a mixed forest. New Phytol 159:153-165
67. US Department of Agriculture and US Department of the Interior (1994) Final supplemental environmental impact statement on management of habitat for late-successional and old-growth forest related species within the range of the northern spotted owl, vol 1. Forest Service, Bureau of Land Management, Portland, Oregon
68. Van Cleve K, Vierech LA (1981) Forest succession in relation to nutrient cycling in the boreal forest of Alaska. In: West DC, Shugart HH, Botkin DB (eds) Forest succession: concepts and applications. Springer, New York, NY, pp 185-211
69. Visser S (1995) Ectomycorrhizal fungal succession in jack pine stands following wildfire. New Phytol 129:389-401
70. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols, a guide to methods and applications. Academic, New York, NY, pp 315-322