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Volumn 173, Issue 6, 2007, Pages 638-649

Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys

Author keywords

AFLP; Barley; Genetic diversity; Molecular markers; SNP; SSR

Indexed keywords

BIOMARKERS; GRAIN (AGRICULTURAL PRODUCT); PLANTS (BOTANY); POLYMORPHISM;

EID: 35248900410     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2007.08.010     Document Type: Article
Times cited : (318)

References (41)
  • 1
    • 84880785389 scopus 로고    scopus 로고
    • Genebank management and the potential role of molecular genetics to improve the use of conserved genetic diversity
    • de Vicente M.C. (Ed), IPGRI, Rome
    • Oritz R., and Engels J. Genebank management and the potential role of molecular genetics to improve the use of conserved genetic diversity. In: de Vicente M.C. (Ed). Issues in Genetic Resources No. 11 (2004), IPGRI, Rome 19-25
    • (2004) Issues in Genetic Resources No. 11 , pp. 19-25
    • Oritz, R.1    Engels, J.2
  • 2
    • 77955055856 scopus 로고    scopus 로고
    • Molecular marker maps of barley: a resource for intra- and interspecific genomics
    • Wenzel G., and Horst L. (Eds), Springer Verlag, Germany
    • Varshney R.K., Prasad M., and Graner A. Molecular marker maps of barley: a resource for intra- and interspecific genomics. In: Wenzel G., and Horst L. (Eds). Molecular Markers in Improvement of Agriculture and Forestry (2004), Springer Verlag, Germany 229-243
    • (2004) Molecular Markers in Improvement of Agriculture and Forestry , pp. 229-243
    • Varshney, R.K.1    Prasad, M.2    Graner, A.3
  • 3
    • 23444454614 scopus 로고
    • Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics
    • Saghai Maroof M.A., Biyashev R.M., Yang G.P., Zhang Q., and Allard R.W. Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics. Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 5466-5470
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 5466-5470
    • Saghai Maroof, M.A.1    Biyashev, R.M.2    Yang, G.P.3    Zhang, Q.4    Allard, R.W.5
  • 5
    • 0036239623 scopus 로고    scopus 로고
    • Genomic analysis of cultivated barley (Hordeum vulgare) using sequence-tagged molecular markers, Estimates of divergence based on RFLP and PCR markers derived from stress-responsive genes, and simple sequence repeats (SSRs)
    • Maestri E., Malcevschi A., Massari A., and Marmiroli N. Genomic analysis of cultivated barley (Hordeum vulgare) using sequence-tagged molecular markers, Estimates of divergence based on RFLP and PCR markers derived from stress-responsive genes, and simple sequence repeats (SSRs). Mol. Genet. Genomics 267 (2002) 186-201
    • (2002) Mol. Genet. Genomics , vol.267 , pp. 186-201
    • Maestri, E.1    Malcevschi, A.2    Massari, A.3    Marmiroli, N.4
  • 6
    • 1642555297 scopus 로고    scopus 로고
    • Genetic diversity in three groups of barley germplasm assessed by simple sequence repeats
    • Matus I.A., and Hayes P.M. Genetic diversity in three groups of barley germplasm assessed by simple sequence repeats. Genome 45 (2002) 1095-1106
    • (2002) Genome , vol.45 , pp. 1095-1106
    • Matus, I.A.1    Hayes, P.M.2
  • 7
    • 0037777809 scopus 로고    scopus 로고
    • AFLP genetic polymorphism in wild barley (Hordeum spontaneum) populations in Israel
    • Turpeinen T., Vanhala T., Nevo E., and Nissila E. AFLP genetic polymorphism in wild barley (Hordeum spontaneum) populations in Israel. Theor. Appl. Genet. 106 (2003) 1333-1339
    • (2003) Theor. Appl. Genet. , vol.106 , pp. 1333-1339
    • Turpeinen, T.1    Vanhala, T.2    Nevo, E.3    Nissila, E.4
  • 8
    • 77957763060 scopus 로고    scopus 로고
    • Molecular diversity of the barley genome
    • von Bothmer R., van Hintum T., Knüpffer H., and Sato K. (Eds), Elsevier, UK
    • Graner A., Bjørnstad A., Konishi T., and Ordon F. Molecular diversity of the barley genome. In: von Bothmer R., van Hintum T., Knüpffer H., and Sato K. (Eds). Diversity in Barley (Hordeum vulgare) (2003), Elsevier, UK 121-141
    • (2003) Diversity in Barley (Hordeum vulgare) , pp. 121-141
    • Graner, A.1    Bjørnstad, A.2    Konishi, T.3    Ordon, F.4
  • 9
    • 13644258392 scopus 로고    scopus 로고
    • Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel
    • Nevo E., Beharev A., Meyer R.C., Hackett C.A., Forster B.P., Russell J.R., and Powell W. Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biol. J. Linn. Soc. 84 (2005) 205-224
    • (2005) Biol. J. Linn. Soc. , vol.84 , pp. 205-224
    • Nevo, E.1    Beharev, A.2    Meyer, R.C.3    Hackett, C.A.4    Forster, B.P.5    Russell, J.R.6    Powell, W.7
  • 12
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers: features and applications
    • Varshney R.K., Graner A., and Sorrells M.E. Genic microsatellite markers: features and applications. Trends Biotechnol. 23 (2005) 48-55
    • (2005) Trends Biotechnol. , vol.23 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 14
    • 0033800707 scopus 로고    scopus 로고
    • Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars
    • Pillen K., Binder A., Kreuzkam B., Ramsay L., Waugh R., Förster J., and Leon J. Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars. Theor. Appl. Genet. 101 (2000) 652-660
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 652-660
    • Pillen, K.1    Binder, A.2    Kreuzkam, B.3    Ramsay, L.4    Waugh, R.5    Förster, J.6    Leon, J.7
  • 15
    • 2542420339 scopus 로고    scopus 로고
    • A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley
    • Russell J., Booth A., Fuller J., Harrower B., Hedley P., Machray G., and Powell W. A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley. Genome 47 (2004) 389-398
    • (2004) Genome , vol.47 , pp. 389-398
    • Russell, J.1    Booth, A.2    Fuller, J.3    Harrower, B.4    Hedley, P.5    Machray, G.6    Powell, W.7
  • 16
    • 33750585276 scopus 로고    scopus 로고
    • Comparative assessment of genetic diversity in cultivated barley collected at different periods of the last century in Austria, Albania and India by using genomic and genic SSR markers
    • Khlestkina E., Varshney R.K., Röder M., Graner A., and Börner A. Comparative assessment of genetic diversity in cultivated barley collected at different periods of the last century in Austria, Albania and India by using genomic and genic SSR markers. Plant Genet. Resour. Charact. Util. 4 (2006) 125-133
    • (2006) Plant Genet. Resour. Charact. Util. , vol.4 , pp. 125-133
    • Khlestkina, E.1    Varshney, R.K.2    Röder, M.3    Graner, A.4    Börner, A.5
  • 17
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular-weight plant DNA
    • Murray M.G., and Thompson W.F. Rapid isolation of high molecular-weight plant DNA. Nucleic Acids Res. 8 (1980) 4321-4325
    • (1980) Nucleic Acids Res. , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 18
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T., Michalek W., Varshney R.K., and Graner A. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor. Appl. Genet. 106 (2003) 411-422
    • (2003) Theor. Appl. Genet. , vol.106 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 19
    • 34047186312 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies
    • Varshney R.K., Beier U., Khlestkina E.K., Kota R., Korzun V., Graner A., and Börner A. Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. Theor. Appl. Genet. 114 (2007) 1105-1116
    • (2007) Theor. Appl. Genet. , vol.114 , pp. 1105-1116
    • Varshney, R.K.1    Beier, U.2    Khlestkina, E.K.3    Kota, R.4    Korzun, V.5    Graner, A.6    Börner, A.7
  • 21
    • 0036387914 scopus 로고    scopus 로고
    • Genetic diversity of wheat wild relatives in the near East detected by AFLP
    • Sasanuma T., Chabane K., Endo T.R., and Valkoun J. Genetic diversity of wheat wild relatives in the near East detected by AFLP. Euphytica 127 (2002) 81-93
    • (2002) Euphytica , vol.127 , pp. 81-93
    • Sasanuma, T.1    Chabane, K.2    Endo, T.R.3    Valkoun, J.4
  • 23
    • 7844227430 scopus 로고    scopus 로고
    • The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis
    • Powell W., Morgante M., Andre C., Hanafey M., Vogel J., Tingey S., and Rafalski A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2 (1996) 225-238
    • (1996) Mol. Breed. , vol.2 , pp. 225-238
    • Powell, W.1    Morgante, M.2    Andre, C.3    Hanafey, M.4    Vogel, J.5    Tingey, S.6    Rafalski, A.7
  • 24
    • 0036010942 scopus 로고    scopus 로고
    • Discovery and assay of single nucleotide polymorphisms in barley (Hordeum vulgare)
    • Kanazin V., Talbert H., See D., DeCamp P., Nevo E., and Blake T. Discovery and assay of single nucleotide polymorphisms in barley (Hordeum vulgare). Plant Mol. Biol. 48 (2002) 529-537
    • (2002) Plant Mol. Biol. , vol.48 , pp. 529-537
    • Kanazin, V.1    Talbert, H.2    See, D.3    DeCamp, P.4    Nevo, E.5    Blake, T.6
  • 25
    • 2542489676 scopus 로고    scopus 로고
    • Genotyping single nucleotide polymorphisms in barley by tetra-primer ARMS-PCR
    • Chiapparino E., Lee D., and Donini P. Genotyping single nucleotide polymorphisms in barley by tetra-primer ARMS-PCR. Genome 47 (2004) 414-420
    • (2004) Genome , vol.47 , pp. 414-420
    • Chiapparino, E.1    Lee, D.2    Donini, P.3
  • 26
    • 0005435718 scopus 로고    scopus 로고
    • Molecular markers: principles and methodology
    • Jain S.M., Ahloowalia B.S., and Brar D.S. (Eds), Kluwer Academic Publishers, The Netherlands
    • Gupta P.K., Varshney R.K., and Prasad M. Molecular markers: principles and methodology. In: Jain S.M., Ahloowalia B.S., and Brar D.S. (Eds). Molecular Techniques in Crop Improvement (2002), Kluwer Academic Publishers, The Netherlands 9-54
    • (2002) Molecular Techniques in Crop Improvement , pp. 9-54
    • Gupta, P.K.1    Varshney, R.K.2    Prasad, M.3
  • 27
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • Gupta P.K., and Varshney R.K. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113 (2000) 163-185
    • (2000) Euphytica , vol.113 , pp. 163-185
    • Gupta, P.K.1    Varshney, R.K.2
  • 28
    • 0032993398 scopus 로고    scopus 로고
    • Use of AFLP in cereal research
    • Ridout C.J., and Donini P. Use of AFLP in cereal research. Trends Plant Sci. 4 (1999) 76-79
    • (1999) Trends Plant Sci. , vol.4 , pp. 76-79
    • Ridout, C.J.1    Donini, P.2
  • 29
    • 0036008761 scopus 로고    scopus 로고
    • Application of single nucleotide polymorphsims in crop genetics
    • Rafalski A. Application of single nucleotide polymorphsims in crop genetics. Curr. Opin. Plant Biol. 5 (2002) 94-100
    • (2002) Curr. Opin. Plant Biol. , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 31
    • 35248839703 scopus 로고    scopus 로고
    • Plant genetic resources: benefits and implications of using molecular markers
    • de Vicente M.C. (Ed), IPGRI, Rome, Italy
    • Graner A., Dehmer K.J., Thiel T., and Börner A. Plant genetic resources: benefits and implications of using molecular markers. In: de Vicente M.C. (Ed). Issues in Genetic Resources No. 11 (2004), IPGRI, Rome, Italy 26-32
    • (2004) Issues in Genetic Resources No. 11 , pp. 26-32
    • Graner, A.1    Dehmer, K.J.2    Thiel, T.3    Börner, A.4
  • 33
    • 4544350582 scopus 로고    scopus 로고
    • Characterization of beta amylase alleles in 79 barley varieties with Pyrosequencing
    • Polokova K., Laurie D., Vaculova K., and Ovesna J. Characterization of beta amylase alleles in 79 barley varieties with Pyrosequencing. Plant Mol. Biol. Rep. 21 (2003) 439-447
    • (2003) Plant Mol. Biol. Rep. , vol.21 , pp. 439-447
    • Polokova, K.1    Laurie, D.2    Vaculova, K.3    Ovesna, J.4
  • 34
    • 4544366786 scopus 로고    scopus 로고
    • Genotyping single nucleotide polymorphisms for selection of barley beta-amylases alleles
    • Paris M., Jones M.G.K., and Eglinton J.K. Genotyping single nucleotide polymorphisms for selection of barley beta-amylases alleles. Plant Mol. Biol. Rep. 20 (2002) 149-159
    • (2002) Plant Mol. Biol. Rep. , vol.20 , pp. 149-159
    • Paris, M.1    Jones, M.G.K.2    Eglinton, J.K.3
  • 35
    • 3042627511 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping of the barley waxy gene by polymerase chain reaction with confronting two-pair primers
    • Domon E., Yanagisawa T., Saito A., and Takeda K. Single nucleotide polymorphism genotyping of the barley waxy gene by polymerase chain reaction with confronting two-pair primers. Plant Breed. 123 (2004) 225-228
    • (2004) Plant Breed. , vol.123 , pp. 225-228
    • Domon, E.1    Yanagisawa, T.2    Saito, A.3    Takeda, K.4
  • 38
    • 0035983453 scopus 로고    scopus 로고
    • Sampling within the genome for measuring within-population diversity: trade-offs between markers
    • Mariette S., Le Corre V., Austerlitz F., and Kremer A. Sampling within the genome for measuring within-population diversity: trade-offs between markers. Mol. Ecol. 11 (2002) 1145-1156
    • (2002) Mol. Ecol. , vol.11 , pp. 1145-1156
    • Mariette, S.1    Le Corre, V.2    Austerlitz, F.3    Kremer, A.4
  • 39
    • 3042700204 scopus 로고    scopus 로고
    • Genetic diversity and differentiation in Eryngium alpinum L. (Apiaceae): comparison of AFLP and microsatellite markers
    • Gaudeul M., Till-Bottraud I., Barjon F., and Manel S. Genetic diversity and differentiation in Eryngium alpinum L. (Apiaceae): comparison of AFLP and microsatellite markers. Heredity 92 (2004) 508-518
    • (2004) Heredity , vol.92 , pp. 508-518
    • Gaudeul, M.1    Till-Bottraud, I.2    Barjon, F.3    Manel, S.4
  • 40
    • 18244370820 scopus 로고    scopus 로고
    • Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions
    • Woodhead M., Russell J., Squirrell J., Hollingsworth P.M., Mackenzie K., Gibby M., and Powell W. Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Mol. Ecol. 14 (2005) 1681-1695
    • (2005) Mol. Ecol. , vol.14 , pp. 1681-1695
    • Woodhead, M.1    Russell, J.2    Squirrell, J.3    Hollingsworth, P.M.4    Mackenzie, K.5    Gibby, M.6    Powell, W.7
  • 41
    • 1942485952 scopus 로고    scopus 로고
    • Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants
    • Nybom H. Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol. Ecol. 13 (2004) 1143-1155
    • (2004) Mol. Ecol. , vol.13 , pp. 1143-1155
    • Nybom, H.1


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