An adaptive data prefetching scheme for biosequence database search on reconfigurable platforms

Proceedings of the ACM Symposium on Applied Computing

Volumn , Issue , 2007, Pages 140-141

  Meng, Xiandong ^a   Chaudhary, Vipin ^b  

^a Wayne State University   (United States)

^b State University of New York   (United States)

Author keywords

Data prefetching; DMA; FPGA; Smith Waterman algorithm

Indexed keywords

DATA REDUCTION; DATABASE SYSTEMS; DNA SEQUENCES; PROTEINS;

DATA PREFETCHING; SMITH-WATERMAN ALGORITHM;

ALGORITHMS;

EID: 35248877988     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1244002.1244036     Document Type: Conference Paper

References (5)

1. Alpha-Data, http://www.alpha-data.com
2. Meng, X. and Chaudhary, V. Bio-Sequence Analysis with Cradle's 3SoC Software Scalable System on Chip In Proceedings of the ACM SAC SAC'04, March. 14-17, Nicosia, Cyprus, 2004
3. Meng, X. and Chaudhary, V. Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors, in proceedings of the ICPADS, Fukuoka, Japan, 20-22 July 2005
4. Oliver, T., Schmidt, B. and Maskell, D. Hyper Customized Processors for Bio-Sequence Database Scaning on FPGAs, IEEE Transactions on Circuits and Systems II, Vol. 52, No. 12, pp. 851-855, 2005
5. Progeniq Pte. Ltd., http://www.progeniq.com