A novel architecture for genomic sequence searching and alignment

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 2823, Issue , 2003, Pages 180-192

  Gardner Stephen, Paul ^a   Knowles, Greg ^a  

^a FLINDERS UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER HARDWARE; COMPUTER HARDWARE DESCRIPTION LANGUAGES; GENES; HARDWARE;

GENOMIC SEQUENCE; HARDWARE DESIGN; HARDWARE DOMAIN; NOVEL ARCHITECTURE; RELATED ALGORITHMS; SEARCH SYSTEM; VHDL SIMULATION; VIRTUAL HARDWARE;

ALGORITHMS;

EID: 35248865205     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-39864-6_15     Document Type: Article

References (7)

1. Human Genome, Working Draft as at 19 June 2002, ftp://ftp.ncbi.nih.gov/ repository/UniGene/Hs.seq.all.gz
2. Blast 2.2.3 (May 13 2002): Altschol, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
3. Speeding Up Genome Computation With a Systolic Accelerator (1998), Dominique Lavenier The, http://citeseer.nj.nec.com/lavenier98speeding.html
4. Rapid and sensitive sequence comparison with FASTP and FASTA: Pearson, W. R., Methods in Enzymology 183:63-98, 1990.
5. The Fasta and Blast programs: Galisson, 2000.
6. Time Logic Corporation technology overview, http://www.timelogic.com/-technology.html
7. Time Logic Corp. DeCypher algorithms, http://www.timelogic.com/-decypher_algorithms.html