Phototrophic Fe(II) oxidation promotes organic carbon acquisition by Rhodobacter capsulatus SB1003

Applied and Environmental Microbiology

Volumn 73, Issue 19, 2007, Pages 6150-6158

  Caiazza, Nicky C ^a,b   Lies, Douglas P ^a,b   Newman, Dianne K ^a,b,c  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ECOSYSTEMS; IRON; METABOLISM; ORGANIC CARBON; OXIDATION; PHOTOSYNTHESIS;

ACETOACETIC ACID UTILIZATION; LIGHT-DEPENDENT GROWTH; LITHOAUTOTROPHIC GROWTH; NITRILOTRIACETIC ACID;

BACTERIA;

CARBON; CITRIC ACID; FERRIC CITRATE; FERROUS ION; NITRILOTRIACETIC ACID;

ANOXIC CONDITIONS; BACTERIUM; GROWTH RESPONSE; IRON; ORGANIC CARBON; PHOTOAUTOTROPHY; PHOTODEGRADATION; PRIMARY PRODUCTION;

ANOXIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; CARBON METABOLISM; CARBON SOURCE; IRON METABOLISM; NONHUMAN; OXIDATION; RHODOBACTER CAPSULATUS;

ANAEROBIOSIS; CARBON; CARBON RADIOISOTOPES; FERROUS COMPOUNDS; IRON; METABOLIC NETWORKS AND PATHWAYS; NITRATES; OXIDATION-REDUCTION; PHOTOTROPHIC PROCESSES; RHODOBACTER CAPSULATUS;

RHODOBACTER CAPSULATUS;

EID: 35148879550     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02830-06     Document Type: Article

References (45)

1. Abrahamson, H. B., A. B. Rezvani, and J. G. Brushmiller. 1994. Photochemical and spectroscopic studies of complexes of iron(III) with citric-acid and other carboxylic-acid. Inorg. Chim. Acta 226:117-127.
2. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1992. Current protocols in molecular biology. Wiley Interscience, New York, NY.
3. Barbeau, K. 2006. Photochemistry of organic iron(III) complexing ligands in oceanic systems. Photochem. Photobiol. 82:1505-1516.
4. Barbeau, K., E. L. Rue, K. W. Bruland, and A. Butler. 2001. Photochemical cycling of iron in the surface ocean mediated by microbial iron(III)-binding ligands. Nature 413:409-413.
5. Barbeau, K., G. Zhang, D. H. Live, and A. Butler. 2002. Petrobactin, a photoreactive siderophore produced by the oil-degrading marine bacterium Marinobacter hydrocarbonoclasticus. J. Am. Chem. Soc. 124:378-379.
6. Bertani, G. 2004. Lysogeny at mid-twentieth century: P1, P2, and other experimental systems. J. Bacteriol. 186:595-600.
7. Burke, D., Dawson, D., and Stearns, T. 2000. Methods in yeast genetics: a Cold Spring Harbor Laboratory course manual. Cold Spring Harbor Laboratory Press, Plainview, NY.
8. Canfield, D. E., M. T. Rosing, and C. Bjerrum. 2006. Early anaerobic metabolisms. Philos. Trans. R. Soc. Lond. B 361:1819-1834.
9. Cauvin, B., A. Colbeau, and P. M. Vignais. 1991. The hydrogenase structural operon in Rhodobacter capsulatus contains a third gene, hupM, necessary for the formation of a physiologically competent hydrogenase. Mol. Microbiol. 5:2519-2527.
10. Croal, L. R., Y. Q. Jiao, and D. K. Newman. 2007. The fox operon from Rhodobacter strain SW2 promotes phototrophic Fe(II) oxidation in Rhodobacter capsulatus SB1003. J. Bacteriol. 189:1774-1782.
11. Croal, L. R., C. M. Johnson, B. L. Beard, and D. K. Newman. 2004. Iron isotope fractionation by Fe(II)-oxidizing photoautotrophic bacteria. Geochim. Cosmochim. Acta 68:1227-1242.
12. Dobbin, P. S., L. H. Warren, N. J. Cook, A. G. McEwan, A. K. Powell, and D. J. Richardson. 1996. Dissimilatory iron(III) reduction by Rhodobacter capsulatus. Microbiology 142:765-774.
13. Duncombe, G. R., and F. E. Frerman. 1976. Molecular and catalytic properties of the acetoacetyl-coenzyme A thiolase of Escherichia coli. Arch. Biochem. Biophys. 176:159-170.
14. Ehrenreich, A., and F. Widdel. 1994. Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism. Appl. Environ. Microbiol. 60:4517-4526.
15. Elble, R. 1992. A simple and efficient procedure for transformation of yeasts. BioTechniques 13:18-20.
16. Frahn, J. L. 1958. The photochemical decomposition of the citrate-ferric iron complex - a study of the reaction products by paper ionophoresis. Aust. J. Chem. 11:399-405.
17. Garrels, R. M., and E. A. Perry, Jr. 1974. Cycling of carbon, sulfur, and oxygen through geologic time, p. 303-336. In E. D. Goldberg (ed.), The sea, vol. 5. Wiley, New York, NY.
18. Gledhill, M., and C. M. G. Vandenberg. 1994. Determination of complexation of iron(III) with natural organic complexing ligands in seawater using cathodic stripping voltammetry. Mar. Chem. 47:41-54.
19. Gutheil, W. G., E. Kasimoglu, and P. C. Nicholson. 1997. Induction of glutathione-dependent formaldehyde dehydrogenase activity in Escherichia coli and Hemophilus influenza. Biochem. Biophys. Res. Commun. 238:693-696.
20. Hartman, H. 1984. The evolution pf photosynthesis and microbial mats: a speculation on the banded iron formations, p. 449-453. In Y. Cohen, R. W. Castenholz, and H. O. Halvorson (ed.), Microbial mats: stromatolites. Alan R. Liss, Inc., New York, NY.
21. Heising, S., L. Richter, W. Ludwig, and B. Schink. 1999. Chlorobium ferrooxidans sp. nov., a phototrophic green sulfur bacterium that oxidizes ferrous iron in coculture with a "Geospirillum" sp. strain. Arch. Microbiol. 172:116-124.
22. Heising, S., and B. Schink. 1998. Phototrophic oxidation of ferrous iron by a Rhodomicrobium vannielii strain. Microbiology 144:2263-2269.
23. Hoffman, C. S., and F. Winston. 1987. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57:267-272.
24. Ito, Y., and A. Butler. 2005. Structure of synechobactins, new siderophores of the marine cyanobacterium Synechococcus sp. PCC 7002. Limnol. Oceanogr. 50:1918-1923.
25. Jiao, Y. Y. Q., A. Kappler, L. R. Croal, and D. K. Newman. 2005. Isolation and characterization of a genetically tractable photoautotrophic Fe(II)-oxidizing bacterium, Rhodopseudomonas palustris strain TIE-1. Appl. Environ. Microbiol. 71:4487-4496.
26. Kappler, A., C. Pasquero, K. Konhauser, and D. K. Newman. 2005. Deposition of banded iron formations by phototrophic Fe(II)-oxidizing bacteria. Geology 33:865-868.
27. Kuma, K., J. Nishioka, and K. Matsunaga. 1996. Controls on iron(III) hydroxide solubility in seawater: the influence of pH and natural organic chelators. Limnol. Oceanogr. 41:396-407.
28. Küpper, F. C., C. J. Carrano, J. U. Kuhn, and A. Butler. 2006. Photoreactivity of iron(III)-aerobactin: photoproduct structure and iron(III) coordination. Inorg. Chem. 45:6028-6033.
29. 2 uptake hydrogenase (hup) of Rhodobacter capsulatus. Mol. Gen. Genet. 214:97-107.
30. Martin, J. D., Y. Ito, V. V. Homann, M. G. Haygood, and A. Butler. 2006. Structure and membrane affinity of new amphiphilic siderophores produced by Ochrobactrum sp. SP18. J. Biol. Inorg. Chem. 11:633-641.
31. Olson, J. M. 2001. "Evolution of photosynthesis" (1970), re-examined thirty years later. Photosynth. Res. 68:95-112.
32. Olson, J. M. 1970. The evolution of photosynthesis. Science 168:438-446.
33. Olson, J. M., and R. E. Blankenship. 2004. Thinking about the evolution of photosynthesis. Photosynth. Res. 80:373-386.
34. Rue, E. L., and K. W. Bruland. 1995. Complexation of iron(III) by natural organic-ligands in the central North Pacific as determined by a new competitive ligand equilibration adsorptive cathodic stripping voltammetric method. Mar. Chem. 50:117-138.
35. Shanks, R. M., N. C. Caiazza, S. M. Hinsa, C. M. Toutain, and G. A. O'Toole. 2006. Saccharomyces cerevisiae-based molecular tool kit for manipulation of genes from gram-negative bacteria. Appl. Environ. Microbiol. 72:5027-5036.
36. Sramek, S. J., and F. E. Frerman. 1975. Purification and properties of Escherichia coli coenzyme A-transferase. Arch. Biochem. Biophys. 171: 14-26.
37. Stolzberg, R. J., and D. N. Hume. 1975. Rapid formation of iminodiacetate from photochemical degradation of iron(III) nitrilotriacetate solutions. Environ. Sci. Technol. 9:654-656.
38. Sunda, W. G., and D. J. Kieber. 1994. Oxidation of humic substances by manganese oxides yields low-molecular-weight organic substrates. Nature 367:62-64.
39. Tebo, B. M., D. B. Edwards, W. G. Sunda, and D. J. Kieber. 1995. Bacterial manganese oxidation leads to the degradation and utilization of natural organic-matter. Abstr. Pap. Am. Chem. Soc. 209:77.
40. Trott, T., R. W. Henwood, and C. H. Langford. 1972. Sunlight photochemistry of ferric nitrilotriacetate complexes. Environ. Sci. Technol. 6:367-368.
41. Trueper, H. G., and N. Pfennig. 1978. Taxonomy of the Rhodospirillales, p. 19-27. In R. K. Clayton and W. R. Sistrom (ed.), The photosynthetic bacteria. Plenum Press, New York, NY.
42. Weber, K. A., L. A. Achenbach, and J. D. Coates. 2006. Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction. Nat. Rev. Microbiol. 4:752-764.
43. Widdel, F., S. Schnell, H. S. A. Ehrenreich, B. Assmus, and B. Schink. 1993. Ferrous iron oxidation by anoxygenic phototrophic bacteria. Nature 362: 834-835.
44. Wu, J., and G. W. Luther III. 1995. Complexation of Fe(III) by natural organic ligands in the Northwest Atlantic Ocean by a competitive ligand equilibrium method and a kinetic approach. Mar. Chem. 50:159-178.
45. Zadvorny, O. A., N. A. Zorin, and I. N. Gogotov. 2006. Transformation of metals and metal ions by hydrogenases from phototrophic bacteria. Arch. Microbiol. 184:279-285.