Structural class tendency of polypeptide: A new conception in predicting protein structural class

Physica A: Statistical Mechanics and its Applications

Volumn 386, Issue 1, 2007, Pages 581-589

  Yu, Tao ^a   Sun, Zhi Bo ^b   Sang, Jian Ping ^a,c   Huang, Sheng You ^a   Zou, Xian Wu ^a  

^a WUHAN UNIVERSITY   (China)

^b Wuhan National Laboratory for Optoelectronics   (China)

^c JIANGHAN UNIVERSITY   (China)

Author keywords

Polypeptides; Protein; Structural class tendency; Structural classes

Indexed keywords

AMINO ACIDS; DATA STRUCTURES; INFORMATION RETRIEVAL; PROTEINS; SET THEORY;

SORTING PREDICTIVE METHOD; STRUCTURAL CLASS TENDENCY OF POLYPEPTIDES;

POLYPEPTIDES;

EID: 35148870617     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2007.07.061     Document Type: Article

References (50)

1. Anfinsen C.B. Science 181 (1973) 223
2. Chou K.C. Curr. Protein Pept. Sci. 1 (2000) 171
3. Shen H.B., and Chou K.C. Bioinformatics 22 (2006) 1717
4. Chou K.C. Biochem. Biophys. Res. Commun. 319 (2004) 433
5. Chou K.C. Biochem. Biophys. Res. Commun. 316 (2004) 636
6. Chou K.C., and Carlacci L. Proteins Struct. Funct. Genet. 9 (1991) 280
7. Finkelstein A.V., and Ptitsyn O.B. Prog. Biophys. Mol. Biol. 50 3 (1987) 171
8. Levitt M., and Chothia C. Nature 261 (1976) 552
9. Chou K.C. Curr. Protein Pept. Sci. 6 (2005) 423
10. Chou K.C., and Zhang C.T. Crit. Rev. Biochem. Mol. Biol. 30 (1995) 275
11. Wang Z.X., and Yuan Z. Proteins Struct. Funct. Genet. 38 (2000) 165
12. Zhou G.P., and Assa-Munt N. Proteins Struct. Funct. Genet. 44 (2001) 57
13. Nishikawa K., and Ooi T. J. Biochem. 91 (1982) 1821
14. Nishikawa K., Kubota Y., and Ooi T. J. Biochem. 94 (1983) 981
15. Nishikawa K., Kubota Y., and Ooi T. J. Biochem. 94 (1983) 997
16. Nakashima H., Nishikawa K., and Ooi T. J. Biochem. 99 (1986) 152
17. Bahar I., Atilgan A.R., Jernigan R.L., and Erman B. Proteins Struct. Funct. Genet. 29 (1997) 172
18. Boberg J., Salakoski T., and Vihinen M. Protein Eng. 8 (1995) 505
19. Cai Y.D., and Zhou G.P. Biochimie 82 (2000) 783
20. Cai Y.D., Li Y.X., and Chou K.C. Biochim. Biophys. Acta. 1476 (2000) 1
21. Chou J.J., and Zhang C.T. J. Theor. Biol. 161 (1993) 251
22. Chou K.C. Proteins Struct. Funct. Genet. 21 (1995) 319
23. Chou K.C., Liu W., Maggiora G.M., and Zhang C.T. Proteins Struct. Funct. Genet. 31 (1998) 97
24. Chou K.C., and Maggiora G.M. Protein Eng. 11 (1998) 523
25. Chou K.C., and Zhang C.T. J. Biol. Chem. 269 (1994) 22014
26. Chou P.Y. Prediction of Protein Structural Classes from Amino Acid Composition (1989), Plenum Press, New York
27. Du Q.S., Wei D.Q., and Chou K.C. Peptides 24 (2003) 1863
28. Eisenhaber F., Frommel C., and Argos P. Proteins 25 (1996) 169
29. Eisenhaber F., Frommel C., and Argos P. Crit. Rev. Biochem. Mol. Biol. 30 (1995) 1
30. Klein P. Biochem. Biophys. Acta. 874 (1986) 205
31. Klein P., and Delisi C. Biopolymers 25 (1986) 1659
32. Liu W., and Chou K.C. J. Protein Chem. 17 (1998) 209
33. Mao B., Chou K.C., and Zhang C.T. Protein Eng. 7 (1994) 319
34. Metfessel B.A., Saurugger P.N., Connelly D.P., and Rich S.T. Protein Sci. 2 (1993) 1171
35. Zhang C.T., and Chou K.C. Protein Sci. 1 (1992) 401
36. Zhang C.T., Chou K.C., and Maggiora G.M. Protein Eng. 8 (1995) 425
37. Zhou G.F., Xu X., and Zhang C.T. Eur. J. Biochem. 210 (1992) 747
38. Zhou G.P. J. Protein Chem. 17 (1998) 729
39. Bu W.S., Feng Z.P., Zhang Z.D., and Zhang C.T. Eur. J. Biochem. 266 (1999) 1043
40. Kumarevel T.S., Gromiha M.M., and Ponnuswamy M.N. Biophys. Chem. 88 (2000) 81
41. Chou K.C., and Cai Y.D. Biochem. Biophys. Res. Commun. 321 (2004) 1007
42. Luo R.Y., Feng Z.P., and Liu J.K. Eur. J. Biochem. 269 (2002) 4219
43. Brenner S.E., Chothia C., and Hubbard T. Proc. Natl. Acad. Sci. USA 95 (1998) 6073
44. Park J., Karplus K., Barrett C., Hughey R., Haussler D., Hubbard T., and Chothia C. J. Mol. Biol. 284 (1998) 1201
45. Chou K.C. Biochem. Biophys. Res. Commun. 264 (1999) 216
46. Murzin A.G., Brenner S.E., Hubbard T., and Chothia C. J. Mol. Biol. 247 (1995) 536
47. Wetlaufer D.B. Proc. Natl. Acad. Sci. USA 70 (1973) 697
48. Mardia K.V., Kent J.T., and Bibby J.M. Multivariate (1979), Academic Press, London
49. Zhou G.P., and Doctor K. Proteins Struct. Funct. Genet. 50 (2003) 44
50. Shen H.B., Yang J., Liu X.J., and Chou K.C. Biochem. Biophys. Res. Commun. 334 (2005) 577