Grid-based spectral fiber clustering

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 6509, Issue PART 1, 2007, Pages

  Klein, Jan ^a   Bittihn, Philip ^b   Ledochowitsch, Peter ^b   Hahn, Horst K ^a   Konrad, Olaf ^a   Rexilius, Jan ^a   Peitgen, Heinz Otto ^a  

^a FRAUNHOFER MEVIS   (Germany)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Diffusion imaging techniques; Fiber clustering; Fiber tracking; Visualization

Indexed keywords

CLUSTERING ALGORITHMS; DATA STRUCTURES; EIGENVALUES AND EIGENFUNCTIONS; IMAGING SYSTEMS; REGRESSION ANALYSIS; ROBUSTNESS (CONTROL SYSTEMS); THREE DIMENSIONAL; VISUALIZATION;

DIFFUSION IMAGING TECHNIQUES; FIBER CLUSTERING; FIBER TRACKING;

FEATURE EXTRACTION;

EID: 35148842455     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.706242     Document Type: Conference Paper

References (29)

1. K. Yamada, O. Kizu, S. Mori, H. Ito, H. Nakamura, S. Yuen, T. Kubota, O. Tanaka, W. Akada, H. Sasajima, K. Mineura, and T. Nishimura, "Brain fiber tracking with clinically feasible diffusion-tensor MR imaging: Initial experience," Radiology 227(1), pp. 295-301, 2003.
2. M. Kinoshita, K. Yamada, N. Hashimoto, A. Kato, S. Izumoto, T. Baba, M. Maruno, T. Nishimura, and T. Yoshimine, "Fiber-tracking does not accurately estimate size of fiber bundle in pathological condition: initial neurosurgical experience using neuronavigation and subcortical white matter stimulation," NeuroImage 25(2). pp. 424-429, 2005.
3. P. Basser, "Fiber-tractography via diffusion tensor MRI (DT-MRI)," in Proceedings of the 6th Annual Meeting of ISMRM, p. 1226, 1998.
4. S. Mori, B. Crain, V. Chacko, and P. van Zijl, "Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging," Ann Neurol. 45(2), pp. 265-269, 1999.
5. J. Klein, H. Hahn, J. Rexilius, P. Erhard, M. Althaus, D. Leibfritz, and H.-O. Peitgen, "Efficient visualization of fiber tracking uncertainty based on complex gaussian noise," in Proc. 14th ISMRM Scientific Meeting & Exhibition (ISMRM 2006), p. 2753, 2006.
6. H. K. Hahn, J. Klein, C. Nimsky, J. Rexilius, and H.-O. Peitgen, "Uncertainty in diffusion tensor based fibre tracking," Acta Neurochirurgica Supplementum 98, pp. 33-41, 2006.
7. D. Jones, A. Travis, G. Eden, C. Pierpaoli, and P. Basser, "PASTA: Pointwise assessment of streamline tractography attributes," Magn. Reson. Med. 53, pp. 1462-1467, 2005.
8. S. Zhang, C. Curry, D. Morris, and D. Laidlaw, "Streamtubes and streamsurfaces for visualizing diffusion tensor MRI volume images," in IEEE Visualization Work in Progress, 2000.
9. D. Merhof, M. Sonntag, F. Enders, C. Nimsky, and G. Greiner, "Hybrid visualization for white matter tracts using triangle strips and point sprites," IEEE Transactions on Visualization and Computer Graphics 12(5), pp. 1181-1188, 2006.
10. J. Klein, F. Ritter, H. Hahn, J. Rexilius, and H.-O. Peitgen, "Brain structure visualization using spectral fiber clustering," in SIGGRAPH 2006, Research Poster, ISBN 1-59593-366-2, 2006.
11. F. Enders, N. Sauber, D. Merhof, P. Hastreiter, C. Nimsky, and M. Stamminger, "Visualization of white matter tracts with wrapped streamlines," in IEEE Visualization, pp. 51-58, 2005.
12. A. Brun, H. Knutsson, H. J. Park, M. E. Shenton, and C.-F. Westin, "Clustering fiber tracts using normalized cuts," in MICCAI'04, pp. 368-375, 2004.
13. J. Shimony, A. Snyder, N. Lori, and T. Conturo, "Automated fuzzy clustering of neuronal pathways in diffusion tensor tracking," in Soc. Mag. Reson. Med, 2002.
14. Z. Ding, J. C. Gore, and A. W. Anderson, "Classification and quantification of neuronal fiber pathways using diffusion tensor MRI," Magn. Reson. Med. 49, pp. 716-721, 2003.
15. L. O'Donnell, K. M, M. E. Shenton, M. Dreusicke, W. E. L. Grimson, and C.-F. Westin, "A method for clustering white matter fiber tracts," AJNR 27(5), pp. 1032-1036, 2006.
16. L. Jonasson, P. Hagmann, J.-P. Thiran, and V. J. Wedeen, "Fiber tracts of high angular resolution diffusion mri are easily segmented with spectral clustering," in Proceeding of ISMRM, p. 1310, 2005.
17. V. E. Kouby, Y. Cointepas, C. Poupon, D. Rivière, N. Golestani, J.-B. Poline, D. L. Bihan, and J.-F. Mangin, "MR diffusion-based inference of a fiber bundle model from a population of subjects," in MICCAI'05, pp. 196-204, 2005.
18. M. Maddah, A. Mewes, S. Haker, W. E. L. Grimson, and S. Warfield, "Automated atlas-based clustering of white matter fiber tracts from DTMRI," in MICCAI'05, pp. 188-195, 2005.
19. A. Brun, H.-J. Park, H. Knutsson, and C.-F. Westin, "Coloring of DT-MRI fiber traces using laplacian eigenmaps," in EUROCAST'03, pp. 564-572, 2003.
20. B. Moberts, A. Vilanova, and J. van Wijk, "Evaluation of fiber clustering methods for diffusion tensor imaging," in IEEE Visualization, pp. 65-72, 2005.
21. K. Yeung, D. Haynor, and W. Ruzzo, "Validating clustering for gene expression data," Bioinformatics 17(4), pp. 309-318, 2001.
22. M. Pauly and M. Gross, "Spectral processing of point-sampled geometry," in SIGGRAPH'01, pp. 379-386, 2001.
23. M. Pauly, M. Gross, and L. P. Kobbelt, "Efficient simplification of point-sampled surfaces," in IEEE Visualization, pp. 163-170, 2002.
24. A. Ng, I. Jordan, and R. Weiss, "On spectral clustering: Analysis and an algorithm," Advances in Neural Information Processing Systems 14, pp. 849-856, 2002.
25. G. Sanguinetti, J. Laidler, and N. Lawrence, "Automatic determination of the number of clusters using spectral algorithms," in MLSP 2005, pp. 55-60, 2005.
26. C. Alpert, A. Kahng, and S. Yao, "Spectral partitioning: The more eigenvectors, the better," Discrete Applied Math 90, pp. 3-26, 1999.
27. Golub and Reinsch, "Algol procedure SVD," Num. Math. 14, pp. 403-420, 1970.
28. D. Krznaric and C. Levcopoulos, "The first subquadratic algorithm for complete linkage clustering," in ISAAC '95, pp. 392-401, 1995.
29. M. Schlueter, O. Konrad, H. K. Hahn, B. Stieltjes, J. Rexilius, and H.-O. Peitgen, "White matter lesion phantom for diffusion tensor data and its application to the assessment of fiber tracking," Medical Imaging: Image Processing 5746, pp. 835-844, 2005.