메뉴 건너뛰기




Volumn 3239, Issue , 2004, Pages 217-225

MHC class I epitope binding prediction trained on small data sets

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPES; FORECASTING; GENES; PEPTIDES; T-CELLS; VACCINES;

EID: 35048880696     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-30220-9_18     Document Type: Article
Times cited : (2)

References (31)
  • 1
    • 0029096589 scopus 로고
    • Prediction of binding to MHC class i molecules
    • Adams, H.P., and Koziol, J.A. 1995. Prediction of binding to MHC class I molecules. J Immunol Methods 185:181-190.
    • (1995) J Immunol Methods , vol.185 , pp. 181-190
    • Adams, H.P.1    Koziol, J.A.2
  • 3
    • 0029018773 scopus 로고
    • Ranking potential binding peptides to MHC molecules by a computational threading approach
    • Altuvia, Y., Schueler, O., and Margalit, H. 1995. Ranking potential binding peptides to MHC molecules by a computational threading approach. J Mol Biol 149: 244-250.
    • (1995) J Mol Biol , vol.149 , pp. 244-250
    • Altuvia, Y.1    Schueler, O.2    Margalit, H.3
  • 4
    • 0037461027 scopus 로고    scopus 로고
    • MHCBN: A comprehensive database of MHC binding and non-binding peptides
    • Bhasin, M., Singh, H., and Raghava, G.P.S. 2003. MHCBN: A comprehensive database of MHC binding and non-binding peptides. Bioinformatics 19: 665-666.
    • (2003) Bioinformatics , vol.19 , pp. 665-666
    • Bhasin, M.1    Singh, H.2    Raghava, G.P.S.3
  • 5
    • 0001790787 scopus 로고
    • Prediction of MHC binding peptides using artificial neural networks
    • ed. a.Y.X. Stonier RJ, IOS Press, Amsterdam
    • Brusic, V., Rudy, G., and Harrison, L.C. 1994. Prediction of MHC binding peptides using artificial neural networks. In Complex systems: mechanism of adaptation, (ed. a.Y.X. Stonier RJ), pp. 253-260. IOS Press, Amsterdam.
    • (1994) Complex Systems: Mechanism of Adaptation , pp. 253-260
    • Brusic, V.1    Rudy, G.2    Harrison, L.C.3
  • 6
    • 0031811850 scopus 로고    scopus 로고
    • MHCPEP, a database of MHC-binding peptides: Update 1997
    • Brusic, V., Rudy, G., and Harrison, L.C. 1998. MHCPEP, a database of MHC-binding peptides: update 1997. Nucleic Acid Res 26: 368-371.
    • (1998) Nucleic Acid Res , vol.26 , pp. 368-371
    • Brusic, V.1    Rudy, G.2    Harrison, L.C.3
  • 9
    • 0035950043 scopus 로고    scopus 로고
    • Toward the Quantitative Prediction of T-Cell Epitopes: CoMFA and CoMSIA Studies of Peptides with Affinity for the Class i MHC Molecule HLA-A*0201
    • Doytchinova, I.A., and Flower, D.R. 2001. Toward the Quantitative Prediction of T-Cell Epitopes: CoMFA and CoMSIA Studies of Peptides with Affinity for the Class I MHC Molecule HLA-A*0201. J. Med. Chem. 44: 3572-3581.
    • (2001) J. Med. Chem. , vol.44 , pp. 3572-3581
    • Doytchinova, I.A.1    Flower, D.R.2
  • 10
    • 0031576987 scopus 로고    scopus 로고
    • Two complementary methods for predicting peptides binding major histocompatibility complex molecules
    • Gulukota, K., Sidney, J., Sette, A., and DeLisi, C. 1997. Two complementary methods for predicting peptides binding major histocompatibility complex molecules. Journal of Molecular Biology 267: 1258-1267.
    • (1997) Journal of Molecular Biology , vol.267 , pp. 1258-1267
    • Gulukota, K.1    Sidney, J.2    Sette, A.3    DeLisi, C.4
  • 11
    • 0029791403 scopus 로고    scopus 로고
    • Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information
    • Hebsgaard, S.M., Korning, P.G., Tolstrup, N., Engelbrecht, J., Rouze, P., and Brunak, S. 1996. Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information. Nucleic Acid Res 24: 3439-3452.
    • (1996) Nucleic Acid Res , vol.24 , pp. 3439-3452
    • Hebsgaard, S.M.1    Korning, P.G.2    Tolstrup, N.3    Engelbrecht, J.4    Rouze, P.5    Brunak, S.6
  • 12
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S., and Henikoff, J.G. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci., USA 89: 10915-10919
    • (1992) Proc. Natl. Acad. Sci., USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 13
    • 0028043552 scopus 로고
    • Position-based sequence weights
    • Henikoff, S., and Henikoff, J.G. 1994. Position-based sequence weights. J Mol Biol 243: 574-578.
    • (1994) J Mol Biol , vol.243 , pp. 574-578
    • Henikoff, S.1    Henikoff, J.G.2
  • 19
    • 0028052724 scopus 로고
    • Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
    • Parker, K.C., Bednarek, M.A., and Coligan, J.E. 1994. Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J Immunol 152: 163-175.
    • (1994) J Immunol , vol.152 , pp. 163-175
    • Parker, K.C.1    Bednarek, M.A.2    Coligan, J.E.3
  • 22
    • 0033523959 scopus 로고    scopus 로고
    • Predicting binding affinities of protein ligands from three-dimensional models: Application to peptide binding to class i major histocompatibility proteins
    • Rognan, D., Lauemøller, S.L., Holm, A., Buus, S., and Tschinke, V. 1999. Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins. J Med Chem 42: 4650-4658.
    • (1999) J Med Chem , vol.42 , pp. 4650-4658
    • Rognan, D.1    Lauemøller, S.L.2    Holm, A.3    Buus, S.4    Tschinke, V.5
  • 23
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider, T.D., and Stephens, R.M. 1990. Sequence logos: a new way to display consensus sequences. Nucleic Acid Res 18: 6097-6100.
    • (1990) Nucleic Acid Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 24
    • 0033820208 scopus 로고    scopus 로고
    • Structure-based prediction of binding peptides to MHC class i molecules: Application to a broad range of MHC alleles
    • Schueler-Furman, O., Alluvia, Y., Sette, A., and Margalit, H. 2000. Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles. Protein Science 9: 1838-1846.
    • (2000) Protein Science , vol.9 , pp. 1838-1846
    • Schueler-Furman, O.1    Alluvia, Y.2    Sette, A.3    Margalit, H.4
  • 25
    • 0033388724 scopus 로고    scopus 로고
    • Nine major HLA class i supertypes account for the vast preponderance of HLA-A and -B polymorphism
    • Sette, A., and Sidney, J. 1999. Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism. Immunogenetics 50: 201-212.
    • (1999) Immunogenetics , vol.50 , pp. 201-212
    • Sette, A.1    Sidney, J.2
  • 26
    • 9444240941 scopus 로고    scopus 로고
    • Peptide binding specificity of major histocompatibility complex class i resolved into an array of apparently independent subspecificities: Quantitation by peptide libraries and improved prediction of binding
    • Stryhn, A., Pedersen, L.O., Romme, T., Holm, C.B., Holm, A., and Buus, S. 1996. Peptide binding specificity of major histocompatibility complex class I resolved into an array of apparently independent subspecificities: quantitation by peptide libraries and improved prediction of binding. Eur J Immunol. 26: 1911-1918.
    • (1996) Eur J Immunol. , vol.26 , pp. 1911-1918
    • Stryhn, A.1    Pedersen, L.O.2    Romme, T.3    Holm, C.B.4    Holm, A.5    Buus, S.6
  • 27
    • 0023890867 scopus 로고
    • Measuring the accuracy of a diagnostic systems
    • Sweet, J.A. 1988. Measuring the accuracy of a diagnostic systems. Science 240:1285-1293.
    • (1988) Science , vol.240 , pp. 1285-1293
    • Sweet, J.A.1
  • 30
    • 0033046472 scopus 로고    scopus 로고
    • Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses
    • Yewdell, J.W., and Bennink, J.R. 1999. Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses. Annual Review of Immunology 17: 51-88.
    • (1999) Annual Review of Immunology , vol.17 , pp. 51-88
    • Yewdell, J.W.1    Bennink, J.R.2
  • 31
    • 0036042580 scopus 로고    scopus 로고
    • Methods for prediction of peptide binding to MHC molecules: A comparative study
    • Yu, K., Petrovsky, N., Schonbach, C., Koh, J.Y., and Brusic, V. 2002. Methods for prediction of peptide binding to MHC molecules: a comparative study. Mol Med. 8: 137-148.
    • (2002) Mol Med. , vol.8 , pp. 137-148
    • Yu, K.1    Petrovsky, N.2    Schonbach, C.3    Koh, J.Y.4    Brusic, V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.