메뉴 건너뛰기




Volumn 3, Issue 1, 2007, Pages 248-255

Computational analysis of current and noise properties of a single open ion channel

Author keywords

[No Author keywords available]

Indexed keywords


EID: 35048865768     PISSN: 15499618     EISSN: None     Source Type: Journal    
DOI: 10.1021/ct6002077     Document Type: Article
Times cited : (4)

References (29)
  • 1
    • 0032055604 scopus 로고    scopus 로고
    • Getting the Most out of Noise in the Central Nervous System
    • Traynelis, S. F.; Jaramillo, F. Getting the Most out of Noise in the Central Nervous System. TINS 1998, 21, 137-145.
    • (1998) TINS , vol.21 , pp. 137-145
    • Traynelis, S.F.1    Jaramillo, F.2
  • 2
    • 35048873163 scopus 로고    scopus 로고
    • Private communication
    • Miller, C. Private communication.
    • Miller, C.1
  • 3
    • 0025342169 scopus 로고
    • Open Channel Noise. V. Fluctuating Barriers to Ion Entry in Gramicidin A Channels
    • Heinemann, S. H.; Sigworth, F. J. Open Channel Noise. V. Fluctuating Barriers to Ion Entry in Gramicidin A Channels. Biophys. J. 1990, 57, 499-514.
    • (1990) Biophys. J , vol.57 , pp. 499-514
    • Heinemann, S.H.1    Sigworth, F.J.2
  • 4
    • 16344384707 scopus 로고    scopus 로고
    • Polymer Partitioning from Nonideal Solutions into Protein Voids
    • Krasilnikov, O. V.; Bezrukov, S. M. Polymer Partitioning from Nonideal Solutions into Protein Voids. Macromolecules 2004, 37, 2650-2657.
    • (2004) Macromolecules , vol.37 , pp. 2650-2657
    • Krasilnikov, O.V.1    Bezrukov, S.M.2
  • 5
    • 0035499892 scopus 로고    scopus 로고
    • Chemistry of Ion Coordination and Hydration Revealed by a K+ Channel-Fab Complex at 2.0 A
    • Zhou, Y.; Morais-Cabral, J.; Kaufman, K.; MacKinnon, R. Chemistry of Ion Coordination and Hydration Revealed by a K+ Channel-Fab Complex at 2.0 A. Nature 2001b, 414, 43-48.
    • (2001) Nature , vol.414 , pp. 43-48
    • Zhou, Y.1    Morais-Cabral, J.2    Kaufman, K.3    MacKinnon, R.4
  • 6
    • 3142652094 scopus 로고    scopus 로고
    • Theoretical and Computational Models of Biological Ion Channels
    • Roux, B.; Alien T.; Bernèche S.; Im W. Theoretical and Computational Models of Biological Ion Channels. Q. Rev. Biophys. 2004, 37, 15-103.
    • (2004) Q. Rev. Biophys , vol.37 , pp. 15-103
    • Roux, B.1    Alien, T.2    Bernèche, S.3    Im, W.4
  • 7
    • 0041806661 scopus 로고    scopus 로고
    • Bernèche, S.; Roux, B. A Microscopic View of Ion Conduction through the K+ Channel. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 8644-8648.
    • Bernèche, S.; Roux, B. A Microscopic View of Ion Conduction through the K+ Channel. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 8644-8648.
  • 8
    • 20544450676 scopus 로고    scopus 로고
    • Rapid Intracellular TEA Block of the KcsA Potassium Channel
    • Kutluay, E.; Roux, B.; Heginbotham, L. Rapid Intracellular TEA Block of the KcsA Potassium Channel. Biophys. J. 2005, 68, 1018-1029.
    • (2005) Biophys. J , vol.68 , pp. 1018-1029
    • Kutluay, E.1    Roux, B.2    Heginbotham, L.3
  • 9
    • 0034855137 scopus 로고    scopus 로고
    • LeMasurier, M.; Heginbotham, L.; Miller, C. KcsA: It's a Potassium Channel. J. Gen. Physiol. 2001, 118, 303-313.
    • LeMasurier, M.; Heginbotham, L.; Miller, C. KcsA: It's a Potassium Channel. J. Gen. Physiol. 2001, 118, 303-313.
  • 11
    • 1042275568 scopus 로고    scopus 로고
    • Molecular Dynamics Study of the KcsA Channel at 2.0-Å Resolution: Stability and Concerted Motions within the Pore
    • Compoint, M.; Carloni, P.; Ramseyer, C.; Girardet, C. Molecular Dynamics Study of the KcsA Channel at 2.0-Å Resolution: Stability and Concerted Motions within the Pore. Biochim. Biophys. Acta 2004, 1661, 26-39.
    • (2004) Biochim. Biophys. Acta , vol.1661 , pp. 26-39
    • Compoint, M.1    Carloni, P.2    Ramseyer, C.3    Girardet, C.4
  • 13
    • 0035277126 scopus 로고    scopus 로고
    • Extension to the Weighted Histogram Analysis Method: Combining Umbrella Sampling with Free Energy Calculations
    • Souaille, M.; Roux, B. Extension to the Weighted Histogram Analysis Method: Combining Umbrella Sampling with Free Energy Calculations. Comput. Phys. Commun. 2001, 35, 40-57.
    • (2001) Comput. Phys. Commun , vol.35 , pp. 40-57
    • Souaille, M.1    Roux, B.2
  • 14
    • 0035957434 scopus 로고    scopus 로고
    • Free Energy Reconstruction from Nonequilibrium Single-Molecule Pulling Experiments
    • Hummer, G.; Szabo, A. Free Energy Reconstruction from Nonequilibrium Single-Molecule Pulling Experiments. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 3658-3661.
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 3658-3661
    • Hummer, G.1    Szabo, A.2
  • 15
    • 23744478437 scopus 로고    scopus 로고
    • Free Energy Surfaces from Single-Molecule Force Spectroscopy
    • Hummer, G.; Szabo, A. Free Energy Surfaces from Single-Molecule Force Spectroscopy. Acc. Chem. Res. 2005, 38, 504-513.
    • (2005) Acc. Chem. Res , vol.38 , pp. 504-513
    • Hummer, G.1    Szabo, A.2
  • 18
    • 0347193736 scopus 로고
    • Reaction-Rate Theory: Fifty Years after Kramers
    • Hanggi, P.; Talkner, P.; Borkovec, M. Reaction-Rate Theory: Fifty Years after Kramers. Rev. Mod. Phys. 1990, 62, 251-341.
    • (1990) Rev. Mod. Phys , vol.62 , pp. 251-341
    • Hanggi, P.1    Talkner, P.2    Borkovec, M.3
  • 19
    • 84906387247 scopus 로고    scopus 로고
    • Siwy, Z.; Ausloos, M.; Ivanova, K. Correlation Studies of Open and Closed State Flluctuatons in an Ion Channel: Analysis of Ion Current through a Large-Conductance Locust Potassium Channel. Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 2002, 65, 0319071-0319075.
    • Siwy, Z.; Ausloos, M.; Ivanova, K. Correlation Studies of Open and Closed State Flluctuatons in an Ion Channel: Analysis of Ion Current through a Large-Conductance Locust Potassium Channel. Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 2002, 65, 0319071-0319075.
  • 21
    • 84961835646 scopus 로고
    • Über Spontane Stromschwankungen in Versichiedenen Eletrikzitätsleitern
    • Schottky, W. Über Spontane Stromschwankungen in Versichiedenen Eletrikzitätsleitern. Ann. Phys. (Leipzig) 1917, 57, 541-567.
    • (1917) Ann. Phys. (Leipzig) , vol.57 , pp. 541-567
    • Schottky, W.1
  • 22
    • 36149010770 scopus 로고
    • Ionization Yield of Radiation. II. The Fluctuations of the Number of Ions
    • Fano, U. Ionization Yield of Radiation. II. The Fluctuations of the Number of Ions. Phys. Rev. 1947, 72, 26-29.
    • (1947) Phys. Rev , vol.72 , pp. 26-29
    • Fano, U.1
  • 23
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: A Package for Molecular Simulation and Trajectory Analysis
    • Lindhal, E.; Hess, B.; van der Spoel, D. GROMACS 3.0: A Package for Molecular Simulation and Trajectory Analysis. J. Mol. Model. 2001, 7, 306-317.
    • (2001) J. Mol. Model , vol.7 , pp. 306-317
    • Lindhal, E.1    Hess, B.2    van der Spoel, D.3
  • 24
    • 0029633168 scopus 로고
    • GROMACS: A Message-Passing Parallel Molecular Dynamics Implementation
    • Berendsen, H. J. C.; van der Spoel, D.; van Drunen, R. GROMACS: A Message-Passing Parallel Molecular Dynamics Implementation. Comput. Phys. Commun. 1995, 91, 43-56.
    • (1995) Comput. Phys. Commun , vol.91 , pp. 43-56
    • Berendsen, H.J.C.1    van der Spoel, D.2    van Drunen, R.3
  • 25
    • 33645961739 scopus 로고    scopus 로고
    • Essman, U.; Perela, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. A Smooth Particle Mesh Ewald Method. J. Chem. Phys. 1995, 103, 8577-8592.
    • Essman, U.; Perela, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. A Smooth Particle Mesh Ewald Method. J. Chem. Phys. 1995, 103, 8577-8592.
  • 26
    • 84986519238 scopus 로고
    • The Weighted Histogram Analysis Method for Free-Energy Calculations on Biomolecules. I. The Method
    • Kumar, S.; Bouzida, D.; Swedesen, R. H.; Kollman, P. A.; Rosenberg, J. M. The Weighted Histogram Analysis Method for Free-Energy Calculations on Biomolecules. I. The Method. J. Comput. Chem. 1992, 13, 1011-1021.
    • (1992) J. Comput. Chem , vol.13 , pp. 1011-1021
    • Kumar, S.1    Bouzida, D.2    Swedesen, R.H.3    Kollman, P.A.4    Rosenberg, J.M.5
  • 27
    • 0032615497 scopus 로고    scopus 로고
    • Dielectric Constant of Water at High Electric Fields: Molecular Dynamics Study
    • Yen, I.; Berkowitz, M. L. Dielectric Constant of Water at High Electric Fields: Molecular Dynamics Study. J. Chem. Phys. 1999, 110, 7935-7942.
    • (1999) J. Chem. Phys , vol.110 , pp. 7935-7942
    • Yen, I.1    Berkowitz, M.L.2
  • 28
    • 4344617341 scopus 로고    scopus 로고
    • Nucleic Acid Transport through Carbon Nanotube Membranes
    • Yeh, I.; Hummer, G. Nucleic Acid Transport through Carbon Nanotube Membranes. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 12177-12182.
    • (2004) Proc. Natl. Acad. Sci. U.S.A , vol.101 , pp. 12177-12182
    • Yeh, I.1    Hummer, G.2
  • 29
    • 36149010109 scopus 로고
    • Thermal Agitation of Electric Charge in Conductors
    • Nyquist, H. Thermal Agitation of Electric Charge in Conductors. Phys. Rev. 1928, 32, 110-113.
    • (1928) Phys. Rev , vol.32 , pp. 110-113
    • Nyquist, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.