A parallel implementation of Gillespie's Direct Method

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 3037, Issue , 2004, Pages 284-291

  Ridwan, Azmi Mohamed ^a   Krishnan, Arun ^a   Dhar, Pawan ^a  

^a BIOINFORMATICS INSTITUTE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

STOCHASTIC SYSTEMS;

COMPLEX CHEMICALS; COMPUTATIONAL DOMAINS; COUPLED REACTION; DIRECT METHOD; GILLESPIE; PARALLEL IMPLEMENTATIONS; RANDOM NUMBERS; STOCHASTIC ALGORITHMS;

ALGORITHMS;

EID: 35048834744     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-24687-9_36     Document Type: Article

References (4)

1. Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81 (1977) 2340-2361
2. Gibson, M.A.: Computational methods for stochastic biological systems. Ph.D. Thesis, Calif. Inst. Technology (2000)
3. Ewing, G., McNickle, D., Pawlikowski, K.: Multiple replications in parallel: Distributed generation of data for speeding up quantitative stochastic simulation. In: Proc. of IMACS'97, 15th Congress of Int. Association for Mathematics and Computers in Simulation, Berlin, Germany (1997) 397-402
4. Schwehm, M.: Parallel stochastic simulation of whole-cell models. In: ICSB 2001 proceedings. (2001)