메뉴 건너뛰기




Volumn 3109, Issue , 2004, Pages 244-253

The protein sequence design problem in canonical model on 2D and 3D lattices

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CRYSTAL LATTICES; HYDROPHOBICITY; PATTERN MATCHING; POLYNOMIAL APPROXIMATION; PROTEINS; STRUCTURAL DESIGN;

EID: 35048820980     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-27801-6_18     Document Type: Article
Times cited : (7)

References (27)
  • 3
    • 0012363098 scopus 로고    scopus 로고
    • On the intractability of protein folding with a finite alphabet of amino acids
    • J. Atkins and W. E. Hart. On the intractability of protein folding with a finite alphabet of amino acids, Algorithmica, 25(2-3):279-294, 1999.
    • (1999) Algorithmica , vol.25 , Issue.2-3 , pp. 279-294
    • Atkins, J.1    Hart, W.E.2
  • 5
    • 0031897962 scopus 로고    scopus 로고
    • Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete
    • B. Berger and T. Leighton. Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete, Journal of Computational Biology, 5(1):27-40, 1998.
    • (1998) Journal of Computational Biology , vol.5 , Issue.1 , pp. 27-40
    • Berger, B.1    Leighton, T.2
  • 6
    • 0037635116 scopus 로고    scopus 로고
    • Approximation Algorithms for MAX-MIN Tiling
    • July
    • P. Herman, B. DasGupta and S. Muthukrishnan. Approximation Algorithms For MAX-MIN Tiling, Journal of Algorithms, 47 (2), 122-134, July 2003.
    • (2003) Journal of Algorithms , vol.47 , Issue.2 , pp. 122-134
    • Herman, P.1    DasGupta, B.2    Muthukrishnan, S.3
  • 10
    • 0019774747 scopus 로고
    • Molecular engineering: An approach to the development of general capabilities for molecular manipulation
    • K. E. Drexler. Molecular engineering: An approach to the development of general capabilities for molecular manipulation, Proceedings of the National Academy of Sciences of the U.S.A., 78:5275-5278, 1981.
    • (1981) Proceedings of the National Academy of Sciences of the U.S.A. , vol.78 , pp. 5275-5278
    • Drexler, K.E.1
  • 11
    • 0005243917 scopus 로고    scopus 로고
    • On the densest k-subgraph problems
    • Faculty of Mathematics and Computer Science, Weizmann Institute of Science, Israel available online
    • U. Feige and M. Seltser. On the densest k-subgraph problems. Technical Report # CS97-16, Faculty of Mathematics and Computer Science, Weizmann Institute of Science, Israel (available online at http://citeseer.nj.nec.com/ feige97densest.html).
    • Technical Report # CS97-16
    • Feige, U.1    Seltser, M.2
  • 13
    • 0030015087 scopus 로고    scopus 로고
    • Fast protein folding in the hydrophobic-hydrophilic model within three-eighths of optimal
    • W. E. Hart and S. Istrail. Fast protein folding in the hydrophobic-hydrophilic model within three-eighths of optimal, Journal of Computational Biology, 3(1):53-96, 1996.
    • (1996) Journal of Computational Biology , vol.3 , Issue.1 , pp. 53-96
    • Hart, W.E.1    Istrail, S.2
  • 15
    • 0030737872 scopus 로고    scopus 로고
    • Lattice and off-lattice side chain models of protein folding: Linear time structure prediction better than 86% of optimal
    • W. E. Hart and S. Istrail. Lattice and off-lattice side chain models of protein folding: Linear time structure prediction better than 86% of optimal, Journal of Computational Biology, 4(3):241-260, 1997.
    • (1997) Journal of Computational Biology , vol.4 , Issue.3 , pp. 241-260
    • Hart, W.E.1    Istrail, S.2
  • 18
    • 0021897852 scopus 로고
    • Approximation schemes for covering and packing problems in image processing and VLSI
    • D. S. Hochbaum and W. Mass. Approximation schemes for covering and packing problems in image processing and VLSI, Journal of ACM, 32(1):130-136, 1985.
    • (1985) Journal of ACM , vol.32 , Issue.1 , pp. 130-136
    • Hochbaum, D.S.1    Mass, W.2
  • 20
    • 0024750637 scopus 로고
    • A lattice statistical mechanics model of the conformational and sequence spaces of proteins
    • K. F. Lau and K. A. Dill. A lattice statistical mechanics model of the conformational and sequence spaces of proteins, Macromolecules, 22:3986-3997, 1989.
    • (1989) Macromolecules , vol.22 , pp. 3986-3997
    • Lau, K.F.1    Dill, K.A.2
  • 24
    • 0029554952 scopus 로고
    • Designing amino acid sequences to fold with good hydrophobic cores
    • Dec.
    • S. J. Sun, R. Brem, H. S. Chan, and K. A. Dill. Designing amino acid sequences to fold with good hydrophobic cores, Protein Engineering, 8(12):1205-1213, Dec. 1995.
    • (1995) Protein Engineering , vol.8 , Issue.12 , pp. 1205-1213
    • Sun, S.J.1    Brem, R.2    Chan, H.S.3    Dill, K.A.4
  • 25
    • 0027234766 scopus 로고
    • Engineering of stable and fast-folding sequences of model proteins
    • E. I. Shakhnovich and A. M. Gutin. Engineering of stable and fast-folding sequences of model proteins, Proc. Natl.Acad.Sci., 90:7195-7199, 1993.
    • (1993) Proc. Natl.Acad.Sci. , vol.90 , pp. 7195-7199
    • Shakhnovich, E.I.1    Gutin, A.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.