메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

PARE: A tool for comparing protein abundance and mRNA expression data

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE STUDIES; MRNA EXPRESSION; PROTEOMICS; WEB TOOLS;

EID: 34948836389     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-309     Document Type: Article
Times cited : (18)

References (27)
  • 2
    • 0346450504 scopus 로고
    • Analysis of Growth-Rate Effects on Productivity of Recombinant Escherichia-Coli Populations Using Molecular Mechanism Models
    • -Mbtd
    • Lee SB Bailey JE Analysis of Growth-Rate Effects on Productivity of Recombinant Escherichia-Coli Populations Using Molecular Mechanism Models Abstracts of Papers of the American Chemical Society 1983, 186:97-Mbtd.
    • (1983) Abstracts of Papers of the American Chemical Society , vol.186 , pp. 97
    • Lee, S.B.1    Bailey, J.E.2
  • 3
    • 0031804382 scopus 로고    scopus 로고
    • Simulation of prokaryotic genetic circuits
    • 10.1146/annurev.biophys.27.1.199
    • McAdams HH Arkin A Simulation of prokaryotic genetic circuits Rev Biophys Biomol Struct 1998, 27:199-224. 10.1146/annurev.biophys.27.1.199
    • (1998) Rev Biophys Biomol Struct , vol.27 , pp. 199-224
    • McAdams, H.H.1    Arkin, A.2
  • 4
    • 0347132484 scopus 로고    scopus 로고
    • Insights into the relation between mRNA and protein expression pattern: I. Theoretical considerations
    • 10.1002/bit.10860
    • Mehra A Lee KH Hatzimanikatis V Insights into the relation between mRNA and protein expression pattern: I. Theoretical considerations Biotechnology and Bioengineering 2003, 84: 822-833. 10.1002/bit.10860
    • (2003) Biotechnology and Bioengineering , vol.84 , pp. 822-833
    • Mehra, A.1    Lee, K.H.2    Hatzimanikatis, V.3
  • 5
    • 0030895921 scopus 로고    scopus 로고
    • A comparison of selected mRNA and protein abundances in human liver
    • 10.1002/elps.1150180333 9150937
    • Anderson L Seilhamer J A comparison of selected mRNA and protein abundances in human liver Electrophoresis 1997, 18:533-537. 10.1002/ elps.1150180333 9150937
    • (1997) Electrophoresis , vol.18 , pp. 533-537
    • Anderson, L.1    Seilhamer, J.2
  • 9
    • 0141920354 scopus 로고    scopus 로고
    • Comparing protein abundance and mRNA expression levels on a genomic scale
    • 12952525 10.1186/gb-2003-4-9-117
    • Greenbaum D Colangelo C Williams K Gerstein M Comparing protein abundance and mRNA expression levels on a genomic scale Genome Biology 2003, 4:117. 193646 12952525 10.1186/gb-2003-4-9-117
    • (2003) Genome Biology , vol.4 , pp. 117
    • Greenbaum, D.1    Colangelo, C.2    Williams, K.3    Gerstein, M.4
  • 10
    • 0035999672 scopus 로고    scopus 로고
    • Analysis of mRNA expression and protein abundance data: An approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts
    • 10.1093/bioinformatics/18.4.585 12016056
    • Greenbaum D Jansen R Gerstein M Analysis of mRNA expression and protein abundance data: An approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts Bioinformatics 2002, 18:585-596. 10.1093/bioinformatics/18.4.585 12016056
    • (2002) Bioinformatics , vol.18 , pp. 585-596
    • Greenbaum, D.1    Jansen, R.2    Gerstein, M.3
  • 11
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • 10.1093/bioinformatics/17.6.509
    • Baldi P Long AD A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes Bioinformatics 2000, 17:509-519, 10.1093/bioinformatics/17.6.509
    • (2000) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 12
    • 3843126332 scopus 로고    scopus 로고
    • RNA dynamics in live Escherichia coli cells
    • 509199 15277674 10.1073/pnas.0404443101
    • Golding I Cox EC RNA dynamics in live Escherichia coli cells Proc Natl Acad Sci USA 2004, 101:11310-11315. 509199 15277674 10.1073/ pnas.0404443101
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11310-11315
    • Golding, I.1    Cox, E.C.2
  • 13
    • 0034662907 scopus 로고    scopus 로고
    • Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
    • 16874 10920198 10.1073/pnas.160270797
    • Gygi SP Corthals GL Zhang Y Rochon Y Aebersold R Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology Proc Natl Acad Sci USA 2000, 97:9390-9395. 16874 10920198 10.1073/ pnas.160270797
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 9390-9395
    • Gygi, S.P.1    Corthals, G.L.2    Zhang, Y.3    Rochon, Y.4    Aebersold, R.5
  • 14
    • 84886760422 scopus 로고    scopus 로고
    • http://proteomics.gersteinlab.org
  • 16
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • 99122 11752295 10.1093/nar/30.1.207
    • Edgar R Domrachev M Lash AE Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucl Acids Res 2002, 30:207-210. 99122 11752295 10.1093/nar/30.1.207
    • (2002) Nucl Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 19
    • 0033573938 scopus 로고    scopus 로고
    • Global response of Saccharomyces cerevisiae to an alkylating agent
    • 15489 9990050 10.1073/pnas.96.4.1486
    • Jelinsky SA Samson LD Global response of Saccharomyces cerevisiae to an alkylating agent Proc Natl Acad Sci USA 1999, 96:1486-1491. 15489 9990050 10.1073/pnas.96.4.1486
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 1486-1491
    • Jelinsky, S.A.1    Samson, L.D.2
  • 20
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • 10.1038/nbt1098-939 9788350
    • Roth FP Hughes JD Estep PW Church GM Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation Nature Biotechnology 1998, 16:939-945. 10.1038/nbt1098-939 9788350
    • (1998) Nature Biotechnology , vol.16 , pp. 939-945
    • Roth, F.P.1    Hughes, J.D.2    Estep, P.W.3    Church, G.M.4
  • 22
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • 83965 10022859
    • Gygi SP Rochon Y Franza BR Aebersold R Correlation between protein and mRNA abundance in yeast Mol Cell Biol 1999, 19:1720-1730. 83965 10022859
    • (1999) Mol Cell Biol , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 23
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
    • 10.1021/pr025556v 12643542
    • Peng J Elias JE Thoreen CC Licklider LJ Gygi SP Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome J Proteome Res 2003, 2:43-50. 10.1021/pr025556v 12643542
    • (2003) J Proteome Res , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 24
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • 10.1038/85686 11231557
    • Washburn MP Wolters D Yates JR 3rd Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nature Biotechnology 2001, 19:242-247. 10.1038/85686 11231557
    • (2001) Nature Biotechnology , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 27
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • 10.1074/mcp.M500061-MCP200 15958392
    • Ishihama Y Oda Y Tabata T Sato T Nagasu T Rappsilber J Mann M Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein Mol Cell Proteomics 2005, 4:1265-1272. 10.1074/ mcp.M500061-MCP200 15958392
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4    Nagasu, T.5    Rappsilber, J.6    Mann, M.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.