Identification of disulfide reductases in Campylobacterales: A bioinformatics investigation

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 92, Issue 4, 2007, Pages 429-441

  Kaakoush, Nadeem O ^a   Sterzenbach, Torsten ^b   Miller, William G ^c   Suerbaum, Sebastian ^b   Mendz, George Louis ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

^b HANNOVER MEDICAL SCHOOL   (Germany)

^c WESTERN REGIONAL RESEARCH CENTER   (United States)

Author keywords

Campylobacterales; Disulfide reductase; Genome analyses; Phylogeny

Indexed keywords

DISULFIDE REDUCTASE; GLUTATHIONE REDUCTASE; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; OXIDOREDUCTASE; THIOREDOXIN REDUCTASE; UNCLASSIFIED DRUG;

ARCOBACTER BUTZLERI; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GENETICS; BACTERIAL GENOME; BIOINFORMATICS; CAMPYLOBACTER JEJUNI; CAMPYLOBACTERACEAE; CAMPYLOBACTERALES; CONTROLLED STUDY; CORRELATION FUNCTION; ENZYME ACTIVITY; ENZYME ANALYSIS; GENOME ANALYSIS; GENOME SIZE; HELICOBACTER PYLORI; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN MOTIF; WOLINELLA SUCCINOGENES;

ARCOBACTER; CAMPYLOBACTER JEJUNI; COENZYMES; COMPUTATIONAL BIOLOGY; DITHIONITROBENZOIC ACID; DNA, BACTERIAL; GENOME, BACTERIAL; GRAM-POSITIVE BACTERIA; HELICOBACTER PYLORI; MOLECULAR SEQUENCE DATA; NADH, NADPH OXIDOREDUCTASES; NADP; PHYLOGENY; PROTEOBACTERIA; SEQUENCE HOMOLOGY, AMINO ACID; THIOREDOXIN-DISULFIDE REDUCTASE; WOLINELLA;

ANIMALIA; ARCOBACTER BUTZLERI; BACTERIA (MICROORGANISMS); CAMPYLOBACTER JEJUNI; CAMPYLOBACTERALES; FIRMICUTES; HELICOBACTER PYLORI; PROKARYOTA; PROTEOBACTERIA; WOLINELLA SUCCINOGENES;

EID: 34848879874     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-007-9171-5     Document Type: Article

References (39)

1. Alarcon T, Domingo D, Lopez-Brea M (1999) Antibiotic resistance problems with Helicobacter pylori. Int J Antimicrob Agents 12:19-26
2. Baar C, Eppinger M, Raddatz G et al (2003) Complete genome sequence and analysis of Wolinella succinogenes. Proc Natl Acad Sci USA 100:11690-11695
3. Bohr UR, Segal I, Primus A, Wex T, Hassan H, Ally R, Malfertheiner P (2003) Detection of a putative novel Wolinella species in patients with squamous cell carcinoma of the esophagus. Helicobacter 8:608-612
4. Chivers PT, Prehoda KE, Raines RT (1997) The CXXC motif: A rheostat in the active site. Biochemistry 36:4061-4066
5. Davioud-Charvet E, McLeish MJ, Veine DM et al (2003) Mechanism-based inactivation of thioredoxin reductase from Plasmodium falciparum by Mannich bases. Implication for cytotoxicity. Biochemistry 42:13319-13330
6. Donachie SP, Bowman JP, On SL, Alam M (2005) Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter. Int J Syst Evol Microbiol 55:1271-1277
7. Ellis WA, Neill SD, O'Brien JJ, Ferguson HW, Hanna J (1977) Isolation of Spirillum/ Vibrio - like organisms from bovine fetuses. Vet Res 100:451-452
8. Felsenstein J (1989) PHYLIP - phylogeny inference package (version 3.2). Cladistics 5:164-166
9. Fomenko DE, Gladyshev VN (2003) Identity and functions of CXXC-derived motifs. Biochemistry 42:11214-11225
10. Fox JG (2002) The non- H pylori helicobacters: Their expanding role in gastrointestinal and systemic diseases. Gut 50:273-283
11. Galperin MY (2005) A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts. BMC Microbiol 5:35-54
12. Hayashi S, Abe M, Kimoto M, Furukawa S, Nakazawa T (2000) The dsbA-dsbB disulfide bond formation system of Burkholderia cepacia is involved in the production of protease and alkaline phosphatase, motility, metal resistance, and multi-drug resistance. Microbiol Immunol 44:41-50
13. Hsueh PR, Teng LJ, Yang PC, Wang SK, Chang SC, Ho SW, Hsieh WC, Luh KT (1997) Bacteremia caused by Arcobacter cryaerophilus 1B. J Clin Microbiol 35:489-491
14. Kaakoush NO, Mendz GL (2005) Helicobacter pylori disulphide reductases: role in metronidazole reduction. FEMS Immunol Med Microbiol 44:137-142
15. Kiehlbauch JA, Brenner DJ, Nicholson MA, Baker CN, Patton CM, Steigerwalt AG, Wachsmuth IK (1991) Campylobacter butzleri sp. nov. isolated from humans and animals with diarrheal illness. J Clin Microbiol 29:376-385
16. a values in proteins of the thioredoxin family. J Mol Biol 253:799-812
17. Lane DJ, Harrison AP, Stahl D, Pace B, Giovannoni SJ, Olsen GJ, Pace NR (1992) Evolutionary relationships among sulfur- and iron-oxidizing Eubacteria. J Bacteriol 174:269-278
18. Leong JM, Morrissey PE, Isberg RR (1993) A 76-amino acid disulfide loop in the Yersinia pseudotuberculosis invasin protein is required for integrin receptor recognition. J Biol Chem 268:20524-20532
19. Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P (2004) SMART 4.0: Towards genomic data integration. Nucleic Acids Res 32:D142-D144
20. Major TA, Burd H, Whitman WB (2004) Abundance of 4Fe-4S motifs in the genomes of methanogens and other prokaryotes. FEMS Microbiol Lett 239:117-123
21. Marshall BJ, Warren JR (1983) Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet 1:1311-1315
22. McGuffin LJ, Bryson K, Jones DT (2000) The PSIPRED protein structure prediction server. Bioinformatics 16:404-405
23. Mendz GL, Mégraud F (2002) Is the molecular basis of metronidazole resistance in microaerophilic organisms understood? Trends Microbiol 10:370-375
24. Miki T, Okada N, Danbara H (2004) Two periplasmic disulfide oxidoreductases, DsbA and SrgA, target outer membrane protein SpiA, a component of the Salmonella pathogenicity island 2 type III secretion system. J Biol Chem 279:34631-34642
25. Moore JE, Corcoran D, Dooley JSG et al (2005) Campylobacter. Vet Res 36:351-382
26. Moore MJ, Miller SM, Walsh CT (1992) C-terminal cysteines of Tn501 mercuric ion reductase. Biochemistry 31:1677-1685
27. Mulder NJ, Apweiler R, Attwood TK et al (2005) InterPro, progress and status in 2005. Nucleic Acids Res 33:D201-D205
28. Nakagawa S, Takai K, Inagaki F, Hirayama H, Nunoura T, Horikoshi K, Sako Y (2005) Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field. Environ Microbiol 7:1619-1632
29. 2 conditions. FEMS Microbiol Lett 166:155-163
30. Rosato V, Pucello N, Giuliano G (2002) Evidence for cysteine clustering in thermophilic proteomes. Trends Genet 18:278-281
31. Roy C, Lancaster D, Simon J (2002) Succinate:quinone oxidoreductases from epsilon-proteobacteria. Biochim Biophys Acta 1553:84-101
32. Takai K, Campbell BJ, Cary SC et al (2005) enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of epsilon proteobacteria. Appl Environ Microbiol 71:7310-7320
33. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
34. Trend MA, Jorgensen MA, Hazell SL, Mendz GL (2001) Oxidases and reductases are involved in metronidazole sensitivity in Helicobacter pylori. Int J Biochem Cell Biol 33:143-153
35. Warren JR (1983) Unidentified curved bacilli on gastric epithelium in active chronic gastritis. Lancet 1:1273-1275
36. Williams CH, Arscott LD, Muller S et al (2000) Thioredoxin reductase two modes of catalysis have evolved. Eur J Biochem 267:6110-6117
37. Wirsen CO, Sievert SM, Cavanaugh CM, Molyneaux SJ, Ahmad A, Taylor LT, DeLong EF, Taylor CD (2002) Characterization of an Autotrophic Sulfide-Oxidizing Marine Arcobacter sp. that produces filamentous sulfur. Appl Environ Microbiol 68:316-325
38. Wolin MJ, Wolin EA, Jacobs NJ (1961) Cytochrome-producing anaerobic Vibrio, Vibrio succinogenes, sp. n. J Bacteriol 81:911-917
39. Zegers I, Martins JC, Willem R, Wyns L, Messens J (2001) Arsenate reductase from S. aureus plasmid pI258 is a phosphatase drafted for redox duty. Nat Struct Biol 8:843-847