Sequence analysis of the equine SLC26A2 gene locus on chromosome 14q15→q21

Cytogenetic and Genome Research

Volumn 118, Issue 1, 2007, Pages 55-62

  Hansen, M ^a   Knorr, C ^a   Hall, A J ^b   Broad, T E ^c   Brenig, B ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b CSIRO   (Australia)

^c UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANALYTIC METHOD; ANIMAL EXPERIMENT; ARTICLE; CARBOXY TERMINAL SEQUENCE; CHROMOSOME 14Q; CONFORMATION; CONTROLLED STUDY; EVOLUTIONARY HOMOLOGY; EXON; FEMALE; GENE; GENE LOCUS; GENE SEQUENCE; HORSE; MACROPHAGE COLONY STIMULATING FACTOR 1 RECEPTOR PRECURSOR GENE; MALE; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSPOSON;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA PRIMERS; FEMALE; HORSES; HUMANS; MALE; MEMBRANE TRANSPORT PROTEINS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA; EQUIDAE; MAMMALIA;

EID: 34848876656     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000106441     Document Type: Article

References (26)

1. Aravind L, Koonin EV: The STAS domain - a link between anion transporters and antisigma-factor antagonists. Curr Biol 10:R53-55 (2000).
2. Baumgartner BG, Kriegesmann B, Jansen S, Swalve HH, Brenig B: A significant QTL for the heel depth in Holstein cattle. XXVIII. International Conference on Animal Genetics, International Society for Animal Genetics. Göttingen, Germany (2002).
3. Brenig B, Baumgartner BG, Kriegesmann B, Habermann F, Fries R, Swalve HH: Molecular cloning, mapping, and functional analysis of the bovine sulfate transporter SLC26A2 gene. Gene 319:161-166 (2003).
4. Brenig B, Beck J, Hall AJ, Broad TE, Chowdhary BP, Piumi F: Assignment of the equine solute carrier 26A2 gene ( SLC26A2 ) to equine chromosome 14q15→q21 (ECA14q15→q21) by in situ hybridization and radiation hybrid panel mapping. Cytogenet Genome Res 107:139 (2004).
5. Dawson PA, Markovich D: Pathogenetics of the human SLC26 transporters. Curr Med Chem 12:385-396 (2005).
6. Desjardins MR, Hurtig MB: Cartilage healing: A review with emphasis on the equine model. Can Vet J 31:565-567 (1990).
7. Everett LA, Glaser B, Beck JC, Idol JR, Buchs A, et al: Pendred syndrome is caused by mutations in a putative sulphate transporter gene (PDS). Nat Genet 17:411-422 (1997).
8. Felsenstein J: PHYLIP (Phylogeny Interference Package) version 3.65. Distributed by the author. Department of Genome Sciencies, University of Washington, Seattle (2005).
9. Forlino A, Piazza R, Tiveron C, Torre SD, Tatangelo L, et al: A diastrophic dysplasia sulfate transporter (SLC26A2) mutant mouse: morphological and biochemical characterization of the resulting chondrodysplasia phenotype. Hum Mol Genet 14:859-871 (2005).
10. Garnier J, Gibrat JF, Robson B: GOR method for predicting protein secondary structure from amino acid sequence. Methods Enzymol 266:540-553 (1996).
11. Gattiker A, Gasteiger E, Bairoch A: ScanProsite: a reference implementation of a PROSITE scanning tool. Appl Bioinformatics 1:107-108 (2002).
12. Godard S, Schibler L, Oustry A, Cribiu EP, Guerin G: Construction of a horse BAC library and cytogenetical assignment of 20 type I and type II markers. Mamm Genome 9:633-637 (1998).
13. Hastbacka J, De La Chapelle A, Mahtani MM, Clines G, Reeve-Daly MP, et al: The diastrophic dysplasia gene encodes a novel sulfate transporter: positional cloning by fine-structure linkage disequilibrium mapping. Cell 78:1073-1087 (1994).
14. Hofmann K, Stoffel W: TMbase - A database of membrane spanning proteins segments. 103. Konferenz der Gesellschaft für Biologische Chemie Studiengruppe Membranstruktur und -transport; Membranforum Frankfurt. Frankfurt/Main, Germany, Biol Chem Hoppe-Seyler (1993).
15. Horton P, Nakai K: Better prediction of protein cellular localization sites with the k nearest neighbors classifier. Proc Int Conf Intell Syst Mol Biol 5:147-152 (1997).
16. Krogh A, Larsson B, Von Heijne G, Sonnhammer EL: Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567-580 (2001).
17. Lohi H, Kujala M, Makela S, Lehtonen E, Kestila M, et al: Functional characterization of three novel tissue-specific anion exchangers SLC26A7, -A8, and -A9. J Biol Chem 277:14246-14254 (2002).
18. Makela S, Kere J, Holmberg C, Hoglund P: SLC26A3 mutations in congenital chloride diarrhea. Hum Mutat 20:425-438 (2002).
19. Mount DB, Romero MF: The SLC26 gene family of multifunctional anion exchangers. Pflugers Arch 447:710-721 (2004).
20. Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ: Molecular phylogenetics and the origins of placental mammals. Nature 409:614-618 (2001).
21. Tatusova TA, Madden TL: BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174:247-250 (1999).
22. Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (1994).
23. Topic E, Gluhak J: Isolation of restrictible DNA. Eur J Clin Chem Clin Biochem 29:327-330 (1991).
24. Tusnady GE, Simon I: The HMMTOP transmembrane topology prediction server. Bioinformatics 17:849-850 (2001).
25. Von Heijne G: Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J Mol Biol 225:487-494 (1992).
26. Zheng J, Shen W, He DZ, Long KB, Madison LD, Dallos P: Prestin is the motor protein of cochlear outer hair cells. Nature 405:149-155 (2000).