Phylogenetic analysis of neuraminidase genes of H5N1 isolates using HPC technologies

HEALTHCOM 2007: Ubiquitous Health in Aging Societies - 2007 9th International Conference on e-Health Networking, Application and Services

Volumn , Issue , 2007, Pages 285-288

  Singh, Dadabhai T ^a   Trehan, Rahul ^b   Ray, Pradeep ^c   Schmidt, Bertil ^c  

^a Genvea Biosciences   (Singapore)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^c The University of New South Wales Singapore   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; CLUSTER ANALYSIS; GENES; MEDICAL COMPUTING; VIRUSES;

CLUSTALW; CLUSTERED COMPUTING ENVIRONMENTS; HPC TECHNOLOGIES; INFLUENZA VIRUSES; NEURAMINIDASE GENES; PHYLIP; PHYLOGENETIC ANALYSIS; WORKFLOW DESIGN SYSTEM QUASCADE-MP2;

BIOINFORMATICS;

EID: 34748891906     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/HEALTH.2007.381652     Document Type: Conference Paper

References (7)

1. Felsenstein, J.: "PHYLIP (Phylogeny Inference Package) version 3.6". Distributed by the author. Department of Genome Sciences, University of Washington, Seattle (2005).
2. Leo P, Marinelli C, Pappadà G, Scioscia G, Zanchetta L.: "BioWBI: an Integrated Tool for building and executing Bioinformatic Analysis Workflows", Bioinformatics Italian Society Meeting (BITS 2004), Padova; 2004
3. Lu, Q., et al.: "KDE Biosciences: Platform for Bioinformatics Analysis Workflows", Journal of Biomedical Informatics 39 (2006) pp. 440-450.
4. Saitou, N, Nei, M. "The neighbor-joining method: a new method for reconstructing phylogenetic trees" Molecular Biology and Evolution 4 (1987) pp. 406-425.
5. Schmidt, B., Lin, F., Laud, A., Sanioso, Y.: "Development of Distributed Bioinformatics Applications with GMP", Concurrency and Computation: Practice and Experience, Vol. 16, pp. 945-959, 2004
6. Schmidt, B, Lin, F., Laud, A., Santoso, Y.: "Parallel Detection of Regulatory Elements with gMP", in Proc. IPDPS 2003, IEEE Press, Nice, France, 2003
7. Thompson, J.D., Higgiins, D.G., Gibson, T.J.: "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice", Nucleic Acid Research, 11;22(22), (1994) pp. 4673-80.