Changing pattern of rotavirus G genotype distribution in Chiang Mai, Thailand from 2002 to 2004: Decline of G9 and reemergence of G1 and G2

Journal of Medical Virology

Volumn 79, Issue 11, 2007, Pages 1775-1782

  Khamrin, Pattara ^a   Peerakome, Supatra ^b   Tonusin, Supin ^c   Malasao, Rungnapa ^b   Okitsu, Shoko ^a   Mizuguchi, Masashi ^a   Ushijima, Hiroshi ^a   Maneekarn, Niwat ^b  

^a UNIVERSITY OF TOKYO   (Japan)

^b Faculty of Medicine Chiang Mai University   (Thailand)

^c McCormick Hospital   (Thailand)

Author keywords

G1; G2; G9; Genotype; Rotavirus; Thailand

Indexed keywords

ARTICLE; FECES ANALYSIS; GENE SEQUENCE; GENOTYPE; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; STRAIN DIFFERENCE; THAILAND; VIRUS ISOLATION; VIRUS STRAIN;

ANTIGENS, VIRAL; CAPSID PROTEINS; CHILD, PRESCHOOL; DIARRHEA; GENOTYPE; HOSPITALIZATION; HUMANS; INCIDENCE; INFANT; INFANT, NEWBORN; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; THAILAND;

ANIMALIA; ROTAVIRUS; ROTAVIRUS A;

EID: 34748860550     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.20960     Document Type: Article

References (33)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
2. Arista S, Giammanco GM, De Grazia S, Ramirez S, Lo Biundo C, Colomba C, Cascio A, Martella V. 2006. Heterogeneity and temporal dynamics of evolution of G1 human rotaviruses in a settled population. J Virol 80:10724-10733.
3. Berois M, Libersou S, Russi J, Arbiza J, Cohen J. 2003. Genetic variation in the VP7 gene of human rotavirus isolated in Montevideo-Uruguay from 1996-1999. J Med Virol 71:456-462.
4. Clark HF, Hoshino Y, Bell LM, Groff J, Hess G, Bachman P, Offit PA. 1987. Rotavirus isolate WI61 representing a presumptive new human serotype. J Clin Microbiol 25:1757-1762.
5. Das BK, Gentsch JR, Cicirello HG, Woods PA, Gupta A, Ramachandran M, Kumar R, Bhan MK, Glass RI. 1994. Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 32:1820-1822.
6. Estes MK. 2001. Rotaviruses and their replication. In: Knipe DM, Howley PM, Griffin DE, Martin RA, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology. 4th edition. Philadelphia, PA: Lippintcott Williams & Wilkins. pp 1747-1785.
7. Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365-1373.
8. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192:146-159.
9. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276-282.
10. Hoshino Y, Jones RW, Ross J, Honma S, Santos N, Gentsch JR, Kapikian AZ. 2004. Rotavirus serotype G9 strains belonging to VP7 gene phylogenetic sequence lineage 1 may be more suitable for serotype G9 vaccine candidates than those belonging to lineage 2 or 3. J Virol 78:7795-7802.
11. Hoshino Y, Honma S, Jones RW, Ross J, Santos N, Gentsch JR, Kapikian AZ, Hesse RA. 2005. A porcine G9 rotavirus strain shares neutralization and VP7 phylogenetic sequence lineage 3 characteristics with contemporary human G9 rotavirus strains. Virology 332:177-188.
12. Jin Q, Ward RL, Knowlton DR, Gabbay YB, Linhares AC, Rappaport R, Woods PA, Glass RI, Gentsch JR. 1996. Divergence of VP7 genes of G1 rotaviruses isolated from infants vaccinated with reassortant rhesus rotaviruses. Arch Virol 141:2057-2076.
13. Jiraphongsa C, Bresee JS, Pongsuwanna Y, Kluabwang P, Poonawagul U, Arporntip P, Kanoksil M, Premsri N, Intusoma U. Rotavirus Surveillance Project Thailand Study Group. 2005. Epidemiology and burden of rotavirus diarrhea in Thailand: Results of sentinel surveillance. J Infect Dis 192:87-93.
14. Khamrin P, Peerakome S, Wongsawasdi L, Tonusin S, Sornchai P, Maneerat V, Khamwan C, Yagyu F, Okitsu S, Ushijima H, Maneekarn N. 2006. Emergence of human G9 rotavirus with an exceptionally high frequency in children admitted to hospital with diarrhea in Chiang Mai, Thailand. J Med Virol 78:273-280.
15. Khamrin P, Maneekarn N, Peerakome S, Chan-it W, Yagyu F, Okitsu S, Ushijima H. 2007a. Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with porcine rotavirus strain G2. Virology 361:243-252.
16. Khamrin P, Maneekarn N, Peerakome S, Tonusin S, Phan TG, Okitsu S, Ushijima H. 2007b. Molecular characterization of rare G3P[9] rotavirus isolated from children hospitalized with acute gastroenteritis. J Med Virol 79:843-851.
17. Kumar S, Tamura K, Nei M. 2004. MEG A3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
18. Linhares AC, Mascarenhas JD, Gusmao RH, Gabbay YB, Fialho AM, Leite JP. 2002. Neonatal rotavirus infection in Belem, northern Brazil: Nosocomial transmission of a P[6]G2 strain. J Med Virol 67:418-426.
19. Maneekarn N, Ushijima H. 2000. Epidemiology of rotavirus infection in Thailand. Pediatr Int 42:415-421.
20. Martella V, Ciarlet M, Banyai K, Lorusso E, Cavalli A, Corrente M, Elia G, Arista S, Camero M, Desario C, Decaro N, Lavazza A, Buonavoglia C. 2006. Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain. Virology 346:301-311.
21. McNeal MM, Sestak K, Choi AH, Basu M, Cole MJ, Aye PP, Bohm RP, Ward RL. 2005. Development of a rotavirus-shedding model in rhesus macaques, using a homologous wild-type rotavirus of a new P genotype. J Virol 79:944-954.
22. Okada J, Urasawa T, Kobayashi N, Taniguchi K, Hasegawa A, Mise K, Urasawa S. 2000. New P serotype of group A human rotavirus closely related to that of a porcine rotavirus. J Med Virol 60:63-69.
23. Page NA, Steele AD. 2004a. Antigenic and genetic characterization of serotype G2 human rotavirus strains from South Africa from 1984 to 1998. J Med Virol 72:320-327.
24. Page NA, Steele AD. 2004b. Antigenic and genetic characterization of serotype G2 human rotavirus strains from the African continent. J Clin Microbiol 42:595-600.
25. Parashar UD, Gibson CJ, Bresse JS, Glass RI. 2006. Rotavirus and severe childhood diarrhea. Emerg Infect Dis 12:304-306.
26. Rahman M, Matthijnssens J, Nahar S, Podder G, Sack DA, Azim T, Van Ranst M. 2005. Characterization of a novel P[25],G11 human group A rotavirus. J Clin Microbiol 43:3208-3212.
27. Rao CD, Gowda K, Reddy BSY. 2000. Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses. Virology 276:104-113.
28. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
29. Steyer A, Poljsak-Prijatelj M, Barlic-Maganja D, Jamnikar U, Mijovski JZ, Marin J. 2007. Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia. Virology 359:275-282.
30. Theamboonlers A, Veravigrom M, Yambangyang O, Trairatvorakul P, Chongsrisawat V, Poovorawan Y. 2005. The incidence of rotavirus A isolates of G genotype in Thailand in 2002-2004. Acta Virol 49:111-115.
31. Urasawa S, Hasegawa A, Urasawa T, Taniguchi K, Wakasugi F, Suzuki H, Inouye S, Pongprot B, Supawadee J, Suprasert S. 1992. Antigenic and genetic analyses of human rotaviruses in Chiang Mai, Thailand: evidence for a close relationship between human and animal rotaviruses. J Infect Dis 166:227-234.
32. Yan H, Nguyen TA, Phan TG, Okitsu S, Li Y, Ushijima H. 2004. Development of RT-multiplex PCR assay for detection of adenovirus and group A and C rotaviruses in diarrheal fecal specimens from children in China. Kansenshogaku Zasshi 78:699-709.
33. Zhou Y, Supawadee J, Khamwan C, Tonusin S, Peerakome S, Kim B, Kaneshi K, Ueda Y, Nakaya S, Akatani K, Maneekarn N, Ushijima H. 2001. Characterization of human rotavirus serotype G9 isolated in Japan and Thailand from 1995 to 1997. J Med Virol 65:619-628.