-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology', The Gene Ontology Consortium
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppiq, J.T., Harris, M.A., Hill, D.P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J.C., Richardson, J.E., Ringwald, M., Rubin, G.M. and Sherlock, G. (2000) 'Gene ontology: tool for the unification of biology', The Gene Ontology Consortium., Nat. Genet., Vol. 25, No. 1, pp.25-29.
-
(2000)
Nat. Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppiq, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
2
-
-
0035987407
-
The post-genomic era of interactive proteomics: Facts and perspectives
-
Auerbach, D., Thaminy, S. Auerbach, D., Thaminy, S., Hottiger, M.O. and Stagljar, I. (2002) 'The post-genomic era of interactive proteomics: facts and perspectives', Proteomics, Vol. 2, No. 6, pp.611-623.
-
(2002)
Proteomics
, vol.2
, Issue.6
, pp. 611-623
-
-
Auerbach, D.1
Thaminy, S.2
Auerbach, D.3
Thaminy, S.4
Hottiger, M.O.5
Stagljar, I.6
-
3
-
-
0036789265
-
Analyzing yeast protein-protein interaction data obtained from different sources
-
Bader, G.D. and Hogue, C.W. (2002) 'Analyzing yeast protein-protein interaction data obtained from different sources', Nat. Biotechnol., Vol. 20, No. 10, pp.991-997.
-
(2002)
Nat. Biotechnol
, vol.20
, Issue.10
, pp. 991-997
-
-
Bader, G.D.1
Hogue, C.W.2
-
4
-
-
0037245913
-
BIND: The Biomolecular interaction network database
-
Bader, G.D., Betel, D. and Hogue, C.W. (2003) 'BIND: the Biomolecular interaction network database', Nucleic Acids Res., Vol. 31, No. 1, pp.248-250.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.3
-
5
-
-
79551602978
-
The semantic web
-
Berners-Lee, T., Hendler, J. and Lassila, Ol. (2001) 'The semantic web', Scientific American, Vol. 284, No. 5, pp.28-37.
-
(2001)
Scientific American
, vol.284
, Issue.5
, pp. 28-37
-
-
Berners-Lee, T.1
Hendler, J.2
Lassila, O.3
-
6
-
-
33644876924
-
-
Birney, E., Andrews, D., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cox, T., Cunningham, F., Curwen, V., Cutts, T., Down, T., Durbin, R., Femandez-Suarez, X.M., Flicek, P., Gräf, S., Hammond, M., Herrero, J., Howe, K., Iyer, V., Jekosch, K., Kähäri, A., Kasprzyk, A., Keefe, D., Kokocinski, F., Kulesha, E., London, D., Longden, I., Melsopp, C., Meidl, P., Overduin, B., Parker, A., Proctor, G., Prlic, A., Rae, M., Rios, D., Redmond, S., Schuster, M., Sealy, I., Searle, S., Severin, J., Slater, G., Smedley, D., Smith, J., Stabenau, A., Stalker, J., Trevanion, S., Ureta-Vidal, A., Vogel, J., White, S., Woodwark, C. and Hubbard, T.J.P. (2006) 'Ensembl', Nucleic Acids Res., 34, Database Issue, pp.D556-D561.
-
Birney, E., Andrews, D., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cox, T., Cunningham, F., Curwen, V., Cutts, T., Down, T., Durbin, R., Femandez-Suarez, X.M., Flicek, P., Gräf, S., Hammond, M., Herrero, J., Howe, K., Iyer, V., Jekosch, K., Kähäri, A., Kasprzyk, A., Keefe, D., Kokocinski, F., Kulesha, E., London, D., Longden, I., Melsopp, C., Meidl, P., Overduin, B., Parker, A., Proctor, G., Prlic, A., Rae, M., Rios, D., Redmond, S., Schuster, M., Sealy, I., Searle, S., Severin, J., Slater, G., Smedley, D., Smith, J., Stabenau, A., Stalker, J., Trevanion, S., Ureta-Vidal, A., Vogel, J., White, S., Woodwark, C. and Hubbard, T.J.P. (2006) 'Ensembl', Nucleic Acids Res., Vol. 34, Database Issue, pp.D556-D561.
-
-
-
-
7
-
-
35349012037
-
-
Bizer, C. Bizer, C. and Seaborne, A. (2004) 'D2RQ - treating non RDF databases as virtual RDF graphs', Poster at The 3rd International Semantic Web Conference, Hiroshima, Japan.
-
Bizer, C. Bizer, C. and Seaborne, A. (2004) 'D2RQ - treating non RDF databases as virtual RDF graphs', Poster at The 3rd International Semantic Web Conference, Hiroshima, Japan.
-
-
-
-
8
-
-
84866262574
-
Sesame: A generic architecture for storing and querying RDF and RDF schema
-
Broekstra, J., Kampman, A. and van Harmelen, F. (2002a) 'Sesame: a generic architecture for storing and querying RDF and RDF schema', The Semantic Web-ISWC, Vol. 2342, pp.54-68.
-
(2002)
The Semantic Web-ISWC
, vol.2342
, pp. 54-68
-
-
Broekstra, J.1
Kampman, A.2
van Harmelen, F.3
-
9
-
-
0037025792
-
Enabling knowledge representation on the web by extending RDF schema
-
Broekstra, J., Klein, M., Decker, S., Fensel, D. and van Harmelen, F., Horrocks, I. (2002b) 'Enabling knowledge representation on the web by extending RDF schema', Computer Networks, Vol. 39, No. 5, pp.609-634.
-
(2002)
Computer Networks
, vol.39
, Issue.5
, pp. 609-634
-
-
Broekstra, J.1
Klein, M.2
Decker, S.3
Fensel, D.4
van Harmelen, F.5
Horrocks, I.6
-
10
-
-
18744376914
-
Online predicted human interaction database
-
Brown, K.R. and Jurisica, I. (2005) Online predicted human interaction database', Bioinformatics, Vol. 21, No. 9, pp.2076-2082.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2076-2082
-
-
Brown, K.R.1
Jurisica, I.2
-
11
-
-
35348998877
-
-
from http://bio.informatics.iupui.edu/HAPPI
-
Chen, J.Y., Mamidipalli, S. and George, B. (2007) HAPPI: A Database of Human Annotated Protein-Protein Interactions, 2006, from http://bio.informatics.iupui.edu/HAPPI/.
-
(2007)
HAPPI: A Database of Human Annotated Protein-Protein Interactions
, pp. 2006
-
-
Chen, J.Y.1
Mamidipalli, S.2
George, B.3
-
12
-
-
33749648767
-
RDF/RDFS-based relational database integration
-
Atlanta, Georgia, pp
-
Chen, H., Wu, Z., Wang, H. and Mao, Y. (2006a) 'RDF/RDFS-based relational database integration', Proceedings of the 22nd International Conference on Data Engineering (ICDE), Atlanta, Georgia, pp.94-94.
-
(2006)
Proceedings of the 22nd International Conference on Data Engineering (ICDE)
, pp. 94-94
-
-
Chen, H.1
Wu, Z.2
Wang, H.3
Mao, Y.4
-
13
-
-
33751045168
-
An integrated computational proteomics method to extract protein targets for fanconi anemia studies
-
Dijon, France
-
Chen, J.Y., Pinkerton, S.L., Shen, C. and Wang, M. (2006b) 'An integrated computational proteomics method to extract protein targets for fanconi anemia studies', 21st Annual ACM Symposium on Applied Computing. Dijon, France, Vol. 1, pp.173-179.
-
(2006)
21st Annual ACM Symposium on Applied Computing
, vol.1
, pp. 173-179
-
-
Chen, J.Y.1
Pinkerton, S.L.2
Shen, C.3
Wang, M.4
-
14
-
-
39049189899
-
Mining alzheimer disease relevant proteins from integrated protein interactome data
-
Maui, HI
-
Chen, J.Y., Shen, C. and Sivachenko, A.Y. (2006c) 'Mining alzheimer disease relevant proteins from integrated protein interactome data', Pacific Symposium on Biocomputing, Maui, HI, Vol. 11, pp.367-378.
-
(2006)
Pacific Symposium on Biocomputing
, vol.11
, pp. 367-378
-
-
Chen, J.Y.1
Shen, C.2
Sivachenko, A.Y.3
-
15
-
-
34250840552
-
A systems biology case study of ovarian cancer drug resistance
-
Stanford, CA
-
Chen, J.Y., Shen, C., Yan, Z., Brown, D.P.G. and Wang, M. (2006d) 'A systems biology case study of ovarian cancer drug resistance', Computational Systems Bioinformatics, Stanford, CA.
-
(2006)
Computational Systems Bioinformatics
-
-
Chen, J.Y.1
Shen, C.2
Yan, Z.3
Brown, D.P.G.4
Wang, M.5
-
16
-
-
84860531384
-
YeastHub: A semantic web use case for integrating data in the life sciences domain
-
Cheung, K.H., Yip, K.Y., Smith, A., deKnikker, R., Masiar, A. and Gerstein, M. (2005) 'YeastHub: a semantic web use case for integrating data in the life sciences domain', Bioinformatics, Vol. 21, No. 1, pp.i85-i96.
-
(2005)
Bioinformatics
, vol.21
, Issue.1
-
-
Cheung, K.H.1
Yip, K.Y.2
Smith, A.3
deKnikker, R.4
Masiar, A.5
Gerstein, M.6
-
18
-
-
0034273774
-
The semantic web: The roles of XML and RDF
-
Decker, S., Melnik, S., van Harmelen, F., Fensel, D., Klein, M., Broekstra, J., Erdmann, M. and Horrocks, I. (2000) 'The semantic web: the roles of XML and RDF', Internet Computing, IEEE, Vol. 4, No. 5, pp.63-73.
-
(2000)
Internet Computing, IEEE
, vol.4
, Issue.5
, pp. 63-73
-
-
Decker, S.1
Melnik, S.2
van Harmelen, F.3
Fensel, D.4
Klein, M.5
Broekstra, J.6
Erdmann, M.7
Horrocks, I.8
-
19
-
-
24044466525
-
The DARPA agent markup language
-
Hendler, J. and McGuinness, D.L. (2000) 'The DARPA agent markup language', IEEE Intelligent Systems, Vol. 15, No. 6, pp.67-73.
-
(2000)
IEEE Intelligent Systems
, vol.15
, Issue.6
, pp. 67-73
-
-
Hendler, J.1
McGuinness, D.L.2
-
20
-
-
29844446333
-
Piazza: Mediation and integration infrastructure for semantic web data
-
Ives, Z.G., Halevy, A.Y., Mork, P. and Tatarinov, I. (2004) 'Piazza: mediation and integration infrastructure for semantic web data', Web Semantics: Science, Services and Agents on the World Wide Web, Vol. 1, No. 2, pp. 155-175.
-
(2004)
Web Semantics: Science, Services and Agents on the World Wide Web
, vol.1
, Issue.2
, pp. 155-175
-
-
Ives, Z.G.1
Halevy, A.Y.2
Mork, P.3
Tatarinov, I.4
-
21
-
-
31144432293
-
Literature mining for the biologist: From information retrieval to biological discovery
-
Jensen, L.J., Saric, J. and Bork, P. (2006) 'Literature mining for the biologist: from information retrieval to biological discovery', Nat. Rev. Genet., Vol. 7, No. 2, pp.119-129.
-
(2006)
Nat. Rev. Genet
, vol.7
, Issue.2
, pp. 119-129
-
-
Jensen, L.J.1
Saric, J.2
Bork, P.3
-
22
-
-
0036500993
-
Systems biology: A brief overview
-
Kitano, H. (2002) 'Systems biology: a brief overview', Science, Vol. 295, No. 5560, pp.1662 1664.
-
(2002)
Science
, vol.295
, Issue.5560
-
-
Kitano, H.1
-
23
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
Mering, C.V., Krause, R., Snel, B., Cornell, M., Oliver, S.G., Fields, S. and Bork, P. (2002) 'Comparative assessment of large-scale data sets of protein-protein interactions', Nature, Vol. 417, pp.399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
Mering, C.V.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
24
-
-
0003267015
-
An introduction to the resource description framework
-
Miller, E. (1998) 'An introduction to the resource description framework', D-Lib Magazine, Vol. 4, No. 5, www.dlib.org/dlib/may98/ miller/05miller.html.
-
(1998)
D-Lib Magazine
, vol.4
, Issue.5
-
-
Miller, E.1
-
25
-
-
33644877439
-
-
Mishra, G.R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., Shivakumar, K., Anuradha, N., Reddy, R., Raghavan, T.M., Menon, S., Hanumanthu, G., Gupta, M., Upendran, S., Gupta, S., Mahesh, M., Jacob, B., Mathew, P., Chatterjee, P., Arun, K.S., Sharma, S., Chandrika, K.N., Deshpande, N., Palvankar, K., Raghavnath, R., Krishnakanth, R., Karathia, H., Rekha, B., Nayak R., Vishnupriya, G., Kumar, H.G., Nagini, M., Kumar, G.S., Jose, R., Deepthi, P., Mohan, S.S., Gandhi, T.K., Harsha, H.C., Deshpande, K.S., Sarker, M., Prasad T.S. and Pandey, A. (2006) 'Human protein reference database-2006 update', Nucleic Acids Res., 34, Database Issue, pp.D411-D414.
-
Mishra, G.R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., Shivakumar, K., Anuradha, N., Reddy, R., Raghavan, T.M., Menon, S., Hanumanthu, G., Gupta, M., Upendran, S., Gupta, S., Mahesh, M., Jacob, B., Mathew, P., Chatterjee, P., Arun, K.S., Sharma, S., Chandrika, K.N., Deshpande, N., Palvankar, K., Raghavnath, R., Krishnakanth, R., Karathia, H., Rekha, B., Nayak R., Vishnupriya, G., Kumar, H.G., Nagini, M., Kumar, G.S., Jose, R., Deepthi, P., Mohan, S.S., Gandhi, T.K., Harsha, H.C., Deshpande, K.S., Sarker, M., Prasad T.S. and Pandey, A. (2006) 'Human protein reference database-2006 update', Nucleic Acids Res., Vol. 34, Database Issue, pp.D411-D414.
-
-
-
-
26
-
-
85153236076
-
PROMPT: Algorithm and tool for automated ontology merging and alignment
-
Austin, Texas, pp
-
Noy, N.F. and Musen, M.A. (2000) 'PROMPT: algorithm and tool for automated ontology merging and alignment', Proceedings of the National Conference on Artificial Intelligence (AAAI), Austin, Texas, pp.450-455.
-
(2000)
Proceedings of the National Conference on Artificial Intelligence (AAAI)
, pp. 450-455
-
-
Noy, N.F.1
Musen, M.A.2
-
27
-
-
0036083294
-
Extraction of knowledge on protein-protein interaction by association rule discovery
-
Oyama, T., Kitano, K., Satou, K. and Ito, T. (2002) 'Extraction of knowledge on protein-protein interaction by association rule discovery', Bioinformatics, Vol. 18, No. 5, pp.705-714.
-
(2002)
Bioinformatics
, vol.18
, Issue.5
, pp. 705-714
-
-
Oyama, T.1
Kitano, K.2
Satou, K.3
Ito, T.4
-
28
-
-
0347511691
-
Next generation simulation tools: The systems biology workbench and BioSPICE integration
-
Sauro, H.M., Hucka, M., Finney, A., Wellock, C., Bolouri, H., Doyle, J. and Kitano, H. (2003) 'Next generation simulation tools: the systems biology workbench and BioSPICE integration', Omics, Vol. 7, No. 4, pp.355-72.
-
(2003)
Omics
, vol.7
, Issue.4
, pp. 355-372
-
-
Sauro, H.M.1
Hucka, M.2
Finney, A.3
Wellock, C.4
Bolouri, H.5
Doyle, J.6
Kitano, H.7
-
29
-
-
33646761733
-
Protein knowledge base: Making of protein ontology
-
American Society for Biochemistry and Molecular Biology, Beijing, China
-
Sidhu, A.S., Dillon, T.S. and Chang, E. (2004) 'Protein knowledge base: making of protein ontology', HUPO 3rd Annual World Congress, American Society for Biochemistry and Molecular Biology, Beijing, China, Vol. 3, p.S262.
-
(2004)
HUPO 3rd Annual World Congress
, vol.3
-
-
Sidhu, A.S.1
Dillon, T.S.2
Chang, E.3
-
30
-
-
1642457154
-
RDF-based architecture for semantic integration of heterogeneous information sources
-
Rio de Janeiro, Brazil, pp
-
Vdovjak, R. and Houben, G.J. (2001) 'RDF-based architecture for semantic integration of heterogeneous information sources', Workshop on Information Integration on the Web, Rio de Janeiro, Brazil, pp.51-57, http://citeseer.ist.psu.edu/vdovjak01rdf.html.
-
(2001)
Workshop on Information Integration on the Web
, pp. 51-57
-
-
Vdovjak, R.1
Houben, G.J.2
-
31
-
-
13444249988
-
-
von Mering, C., Jensen, L.J., Snel, B., Hooper, S.D., Krupp, M., Foglierini, M., Jouffre, N., Huynen, M.A. and Bork, P. (2005) 'STRING: known and predicted protein-protein associations, integrated and transferred across organisms', Nucleic Acids Res., 33, Database Issue, pp.D433-D437.
-
von Mering, C., Jensen, L.J., Snel, B., Hooper, S.D., Krupp, M., Foglierini, M., Jouffre, N., Huynen, M.A. and Bork, P. (2005) 'STRING: known and predicted protein-protein associations, integrated and transferred across organisms', Nucleic Acids Res., Vol. 33, Database Issue, pp.D433-D437.
-
-
-
-
32
-
-
0037580112
-
Technologies for integrating biological data
-
Wong, L. (2002) 'Technologies for integrating biological data', Brief Bioinform., Vol. 3, No. 4, pp.389-404.
-
(2002)
Brief Bioinform
, vol.3
, Issue.4
, pp. 389-404
-
-
Wong, L.1
-
33
-
-
0037138406
-
MINT: A molecular interaction database
-
Zanzoni, A., Montecchi-Palazzi, L., Quondam, M., Ausiello, G., Helmer-Citterich, M., Cesareni, G. (2002) 'MINT: a molecular interaction database', FEBS Lett., Vol. 513, No. 1, pp.135-140.
-
(2002)
FEBS Lett
, vol.513
, Issue.1
, pp. 135-140
-
-
Zanzoni, A.1
Montecchi-Palazzi, L.2
Quondam, M.3
Ausiello, G.4
Helmer-Citterich, M.5
Cesareni, G.6
|