Gene expression analysis of nuclear factor I-A deficient mice indicates delayed brain maturation

Genome Biology

Volumn 8, Issue 5, 2007, Pages

  Wong, Yong ^a   Schulze, Christian ^a   Streichert, Thomas ^a   Gronostajski, Richard M ^b   Schachner, Melitta ^a,c   Tilling, Thomas ^a  

^a UNIVERSITY MEDICAL CENTER HAMBURG EPPENDORF   (Germany)

^b UNIVERSITY AT BUFFALO   (United States)

^c RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HEPATOCYTE NUCLEAR FACTOR 1; MESSENGER RNA; OLIGONUCLEOTIDE; NFIA PROTEIN, MOUSE; NUCLEAR FACTOR I; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BINDING SITE; BRAIN MALFORMATION; CELL MATURATION; COMPUTER MODEL; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DOWN REGULATION; FEMALE; GENE CONTROL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE TARGETING; GENETIC CONSERVATION; MALE; MARKER GENE; MICROARRAY ANALYSIS; MOUSE; NERVE CELL DIFFERENTIATION; NEURAL STEM CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGODENDROGLIA; PERINATAL PERIOD; PHENOTYPE; PHYLOGENY; PROTEIN BINDING; PROTEIN DEFICIENCY; TRANSCRIPTION REGULATION; ANIMAL; BRAIN; CELL DIFFERENTIATION; CYTOLOGY; GENETIC TRANSCRIPTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOUSE MUTANT; NERVE CELL; PHYSIOLOGY;

APOPTOSIS; BONE DEVELOPMENT; CELLS, CULTURED; DEXAMETHASONE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GLUCOCORTICOIDS; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OSTEOBLASTS; OSTEOPOROSIS; OXIDATIVE STRESS; SIGNAL TRANSDUCTION; WNT PROTEINS; ANIMALS; BINDING SITES; BRAIN; CELL DIFFERENTIATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MICE; MICE, KNOCKOUT; NEURONS; NFI TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ANIMALIA; MUS;

EID: 34548858216     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2007-8-5-r72     Document Type: Article

References (73)

1. Rupp RA Kruse U Multhaup G Göbel U Beyreuther K Sippel AE Chicken NFI/TGGCA proteins are encoded by at least three independent genes: NFI-A, NFI-B and NFI-C with homologues in mammalian genomes. Nucleic Acids Res 1990 18 2607-2616 330743 2339052 10.1093/nar/18.9.2607
2. Kruse U Qian F Sippel AE Identification of a fourth nuclear factor I gene in chicken by cDNA cloning: NFI-X. Nucleic Acids Res 1991 19 6641 329238 1754401 10.1093/nar/19.23.6641
3. Gronostajski RM Roles of the NFI/CTF gene family in transcription and development. Gene 2000 249 31-45 10.1016/S0378-1119(00)00140-2 10831836
4. Nagata K Guggenheimer RA Hurwitz J Adenovirus DNA replication in vitro: synthesis of full-length DNA with purified proteins. Proc Natl Acad Sci USA 1983 80 4266-4270 384018 6308611 10.1073/pnas.80.14.4266
5. Nagata K Guggenheimer RA Hurwitz J Specific binding of a cellular DNA replication protein to the origin of replication of adenovirus DNA. Proc Natl Acad Sci USA 1983 80 6177-6181 394258 6336326 10.1073/ pnas.80.20.6177
6. Hennighausen L Siebenlist U Danner D Leder P Rawlins D Rosenfeld P Kelly T Jr High-affinity binding site for a specific nuclear protein in the human IgM gene. Nature 1985 314 289-292 10.1038/314289a0 3920528
7. Nowock J Borgmeyer U Püschel AW Rupp RA Sippel AE The TGGCA protein binds to the MMTV-LTR, the adenovirus origin of replication, and the BK virus enhancer. Nucleic Acids Res 1985 13 2045-2061 341134 2987840 10.1093/nar/13.6.2045
8. Nilsson P Hallberg B Thornell A Grundstrom T Mutant analysis of protein interactions with a nuclear factor I binding site in the SL3-3 virus enhancer. Nucleic Acids Res 1989 17 4061-4075 317919 2544855 10.1093/nar/ 17.11.4061
9. Jones KA Kadonaga JT Rosenfeld PJ Kelly TJ Tjian R A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication. Cell 1987 48 79-89 10.1016/0092-8674(87)90358-8 3024847
10. Shaul Y Ben Levy R De Medina T High affinity binding site for nuclear factor I next to the hepatitis B virus S gene promoter. EMBO J 1986 5 1967-1971 1167065 3463507
11. Tamura T Miura M Ikenaka K Mikoshiba K Analysis of transcription control elements of the mouse myelin basic protein gene in HeLa cell extracts: demonstration of a strong NFI-binding motif in the upstream region. Nucleic Acids Res 1988 16 11441-11459 339057 2463515 10.1093/nar/ 16.24.11441
12. Aoyama A Tamura TA Mikoshiba K Regulation of brain-specific transcription of the mouse myelin basic protein gene: Function of the NFI-binding site in the distal promoter. Biochem Biophys Res Commun 1990 167 648-653 10.1016/0006-291X(90)92074-A 1690988
13. Bisgrove DA Monckton EA Packer M Godbout R Regulation of brain fatty acid-binding protein expression by differential phosphorylation of nuclear factor I in malignant glioma cell lines. J Biol Chem 2000 275 30668-30676 10.1074/jbc.M003828200 10896661
14. Wang W Stock RE Gronostajski RM Wong YW Schachner M Kilpatrick DL A role for nuclear factor I in the intrinsic control of cerebellar granule neuron gene expression. J Biol Chem 2004 279 53491-53497 10.1074/ jbc.M410370200 15466411
15. Luciakova K Barath P Poliakova D Persson A Nelson BD Repression of the human adenine nucleotide translocase-2 gene in growth-arrested human diploid cells: The role of nuclear factor-1. J Biol Chem 2003 278 30624-30633 10.1074/jbc.M303530200 12777383
16. Kleene R Yang H Kutsche M Schachner M The neural recognition molecule L1 is a sialic acid-binding lectin for CD24, which induces promotion and inhibition of neurite outgrowth. J Biol Chem 2001 276 21656-21663 10.1074/jbc.M101790200 11283023
17. Kruse U Sippel AE The genes for transcription factor nuclear factor I give rise to corresponding splice variants between vertebrate species. J Mol Biol 1994 238 860-865 10.1006/jmbi.1994.1343 8182757
18. Altmann H Wendler W Winnacker EL Transcriptional activation by CTF proteins is mediated by a bipartite low-proline domain. Proc Natl Acad Sci USA 1994 91 3901-3905 43690 8171010 10.1073/pnas.91.9.3901
19. Inoue T Tamura T Furuichi T Mikoshiba K Isolation of complementary DNAs encoding a cerebellum-enriched nuclear factor I family that activates transcription from the mouse myelin basic protein promoter. J Biol Chem 1990 265 19065-19070 1699939
20. das Neves L Duchala CS Tolentino-Silva F Haxhiu MA Colmenares C Macklin WB Campbell CE Butz KG Gronostajski RM Disruption of the murine nuclear factor I-A gene (Nfia) results in perinatal lethality, hydrocephalus, and agenesis of the corpus callosum. Proc Natl Acad Sci USA 1999 96 11946-11951 18392 10518556 10.1073/pnas.96.21.11946
21. Shu T Butz KG Plachez C Gronostajski RM Richards LJ Abnormal development of forebrain midline glia and commissural projections in Nfia knock-out mice. J Neurosci 2003 23 203-212 12514217
22. Dahme M Bartsch U Martini R Anliker B Schachner M Mantei N Disruption of the mouse L1 gene leads to malformations of the nervous system. Nat Genet 1997 17 346-349 10.1038/ng1197-346 9354804
23. Demyanenko GP Tsai AY Maness PF Abnormalities in neuronal process extension, hippocampal development, and the ventricular system of L1 knockout mice. J Neurosci 1999 19 4907-4920 10366625
24. Chaudhry AZ Lyons GE Gronostajski RM Expression patterns of the four nuclear factor I genes during mouse embryogenesis indicate a potential role in development. Dev Dyn 1997 208 313-325 10.1002/ (SICI)1097-0177(199703)208:3<313::AID-AJA3>3.0.CO;2-L 9056636
25. Lockhart DJ Dong H Byrne MC Follettie MT Gallo MV Chee MS Mittmann M Wang C Kobayashi M Horton H et al Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol 1996 14 1675-1680 10.1038/nbt1296-1675 9634850
26. Irizarry RA Hobbs B Collin F Beazer-Barclay YD Antonellis KJ Scherf U Speed TP Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003 4 249-264 10.1093/biostatistics/4.2.249 12925520
27. Hardy K Mansfield L Mackay A Benvenuti S Ismail S Arora P O'Hare MJ Jat PS Transcriptional networks and cellular senescence in human mammary fibroblasts. Mol Biol Cell 2005 16 943-953 545924 15574883 10.1091/ mbc.E04-05-0392
28. Miura M Tamura T Mikoshiba K Cell-specific expression of the mouse glial fibrillary acidic protein gene: Identification of the cis- and trans-acting promoter elements for astrocyte-specific expression. J Neurochem 1990 55 1180-1188 10.1111/j.1471-4159.1990.tb03123.x 2398353
29. Krohn K Rozovsky I Wals P Teter B Anderson CP Finch CE Glial fibrillary acidic protein transcription responses to transforming growth factor-beta1 and interleukin-1beta are mediated by a nuclear factor-1-like site in the near-upstream promoter. J Neurochem 1999 72 1353-1361 10.1046/j.1471-4159.1999.721353.x 10098836
30. Kenwrick S Watkins A De Angelis E Neural cell recognition molecule L1: relating biological complexity to human disease mutations. Hum Mol Genet 2000 9 879-886 10.1093/hmg/9.6.879 10767310
31. Francis F Koulakoff A Boucher D Chafey P Schaar B Vinet MC Friocourt G McDonnell N Reiner O Kahn A et al Doublecortin is a developmentally regulated, microtubule-associated protein expressed in migrating and differentiating neurons. Neuron 1999 23 247-256 10.1016/ S0896-6273(00)80777-1 10399932
32. Friocourt G Koulakoff A Chafey P Boucher D Fauchereau F Chelly J Francis F Doublecortin functions at the extremities of growing neuronal processes. Cereb Cortex 2003 13 620-626 10.1093/cercor/13.6.620 12764037
33. Joseph R Dou D Tsang W Molecular cloning of a novel mRNA (neuronatin) that is highly expressed in neonatal mammalian brain. Biochem Biophys Res Commun 1994 201 1227-1234 10.1006/bbrc.1994.1836 8024565
34. Valente T Junyent F Auladell C Zac1 is expressed in progenitor/stem cells of the neuroectoderm and mesoderm during embryogenesis: differential phenotype of the Zac1-expressing cells during development. Dev Dyn 2005 233 667-679 10.1002/dvdy.20373 15844099
35. Bozzali M Wrabetz L Axonal signals and oligodendrocyte differentiation. Neurochem Res 2004 29 979-988 10.1023/B:NERE.0000021242.12455.75 15139296
36. Richardson WD Oligodendrocyte development. Glial Cell Development: Basic Principles and Clinical Relevance Oxford: Oxford University Press Jessen KR, Richardson WD 2nd edition 2001 21-54
37. Davey JC Becker KB Schneider MJ St Germain DL Galton VA Cloning of a cDNA for the type II iodothyronine deiodinase. J Biol Chem 1995 270 26786-26789 10.1074/jbc.270.45.26786 7592917
38. Baas D Legrand C Samarut J Flamant F Persistence of oligodendrocyte precursor cells and altered myelination in optic nerve associated to retina degeneration in mice devoid of all thyroid hormone receptors. Proc Natl Acad Sci USA 2002 99 2907-2911 122446 11867729 10.1073/ pnas.052482299
39. Haas S Steplewski A Siracusa LD Amini S Khalili K Identification of a sequence-specific single-stranded DNA binding protein that suppresses transcription of the mouse myelin basic protein gene. J Biol Chem 1995 270 12503-12510 10.1074/jbc.270.50.29724 7539003
40. Nave KA Myelin-specific genes and their mutations in the mouse Glial Cell Development: Basic Principles and Clinical Relevance Oxford: Oxford University Press Jessen KR, Richardson WD 2nd edition 2001 177-208
41. Wood PM Schachner M Bunge RP Inhibition of Schwann cell myelination in vitro by antibody to the L1 adhesion molecule. J Neurosci 1990 10 3635-3645 2230951
42. Deneen B Ho R Lukaszewicz A Hochstim CJ Gronostajski RM Anderson DJ The transcription factor NFIA controls the onset of gliogenesis in the developing spinal cord. Neuron 2006 52 953-968 10.1016/ j.neuron.2006.11.019 17178400
43. Tozuka Y Fukuda S Namba T Seki T Hisatsune T GABAergic excitation promotes neuronal differentiation in adult hippocampal progenitor cells. Neuron 2005 47 803-815 10.1016/j.neuron.2005.08.023 16157276
44. Birney E Andrews D Caccamo M Chen Y Clarke L Coates G Cox T Cunningham F Curwen V Cutts T et al Ensembl 2006. Nucleic Acids Res 2006 34 D556-D561 1347495 16381931 10.1093/nar/gkj133
45. Angelova A Borissova Z Avramova F Simeonova V Stambolova M HMG-2 protein in developing rat brain cells. Int J Biochem 1993 25 37-41 10.1016/ 0020-711X(93)90487-Y 8432381
46. Kondo T Raff M Chromatin remodeling and histone modification in the conversion of oligodendrocyte precursors to neural stem cells. Genes Dev 2004 18 2963-2972 534656 15574597 10.1101/gad.309404
47. Kuhlbrodt K Herbarth B Sock E Enderich J Hermans-Borgmeyer I Wegner M Cooperative function of POU proteins and SOX proteins in glial cells. J Biol Chem 1998 273 16050-16057 10.1074/jbc.273.26.16050 9632656
48. Garwood J Garcion E Dobbertin A Heck N Calco V ffrench-Constant C Faissner A The extracellular matrix glycoprotein Tenascin-C is expressed by oligodendrocyte precursor cells and required for the regulation of maturation rate, survival and responsiveness to platelet-derived growth factor. Eur J Neurosci 2004 20 2524-2540 10.1111/ j.1460-9568.2004.03727.x 15548197
49. Yamamoto Y Mizuno R Nishimura T Ogawa Y Yoshikawa H Fujimura H Adachi E Kishimoto T Yanagihara T Sakoda S Cloning and expression of myelin-associated oligodendrocytic basic protein. A novel basic protein constituting the central nervous system myelin. J Biol Chem 1994 269 31725-31730 7989345
50. Schaeren-Wiemers N Schaefer C Valenzuela DM Yancopoulos GD Schwab ME Identification of new oligodendrocyte- and myelin-specific genes by a differential screening approach. J Neurochem 1995 65 10-22 7790852
51. Coffey JC McDermott KW The regional distribution of myelin oligodendrocyte glycoprotein (MOG) in the developing rat CNS: An in vivo immunohistochemical study. J Neurocytol 1997 26 149-161 10.1023/ A:1018579912831 9192283
52. Morita K. Sasaki H. Fujimoto K. Furuse M. Tsukita S. Claudin-11/ OSP-based tight junctions of myelin sheaths in brain and Sertoli cells in testis. J Cell Biol 1999 145 579-588 10.1083/jcb.145.3.579 10225958
53. Dubois-Dalcq M Behar T Hudson L Lazzarini RA Emergence of three myelin proteins in oligodendrocytes cultured without neurons. J Cell Biol 1986 102 384-392 10.1083/jcb.102.2.384 2418030
54. Butt AM Kirvell S Glial cells in transected optic nerves of immature rats. II. An immunohistochemical study. J Neurocytol 1996 25 381-392 10.1007/BF02284809 8835786
55. Kang SW Shin YJ Shim YJ Jeong SY Park IS Min BH Clusterin interacts with SCLIP (SCG10-like protein) and promotes neurite outgrowth of PC12 cells. Exp Cell Res 2005 309 305-315 10.1016/j.yexcr.2005.06.012 16038898
56. Kligman D Marshak DR Purification and characterization of a neurite extension factor from bovine brain. Proc Natl Acad Sci USA 1985 82 7136-7139 391325 3863143 10.1073/pnas.82.20.7136
57. Lipton SA Wagner JA Madison RD D'Amore PA Acidic fibroblast growth factor enhances regeneration of processes by postnatal mammalian retinal ganglion cells in culture. Proc Natl Acad Sci USA 1988 85 2388-2392 279998 3353388 10.1073/pnas.85.7.2388
58. Takahashi K Yamada M Ohata H Honda K Yamada M Ndrg2 promotes neurite outgrowth of NGF-differentiated PC12 cells. Neurosci Lett 2005 388 157-162 16039777
59. Chung RS Vickers JC Chuah MI West AK Metallothionein-IIA promotes initial neurite elongation and postinjury reactive neurite growth and facilitates healing after focal cortical brain injury. J Neurosci 2003 23 3336-3342 12716941
60. Furnish EJ Zhou W Cunningham CC Kas JA Schmidt CE Gelsolin overexpression enhances neurite outgrowth in PC12 cells. FEBS Lett 2001 508 282-286 10.1016/S0014-5793(01)03078-2 11718731
61. Taira E Kohama K Tsukamoto Y Okumura S Miki N Gicerin/CD146 is involved in neurite extension of NGF-treated PC12 cells. J Cell Physiol 2005 204 632-637 10.1002/jcp.20365 15880440
62. Frey D Laux T Xu L Schneider C Caroni P Shared and unique roles of CAP23 and GAP43 in actin regulation, neurite outgrowth, and anatomical plasticity. J Cell Biol 2000 149 1443-1454 10.1083/jcb.149.7.1443 10871284
63. Doherty P Fruns M Seaton P Dickson G Barton CH Sears TA Walsh FS A threshold effect of the major isoforms of NCAM on neurite outgrowth. Nature 1990 343 464-466 10.1038/343464a0 2153939
64. Laux T Fukami K Thelen M Golub T Frey D Caroni P GAP43, MARCKS, and CAP23 modulate PI(4,5)P(2) at plasmalemmal rafts, and regulate cell cortex actin dynamics through a common mechanism. J Cell Biol 2000 149 1455-1472 10.1083/jcb.149.7.1455 10871285
65. Yamada H Fredette B Shitara K Hagihara K Miura R Ranscht B Stallcup WB Yamaguchi Y The brain chondroitin sulfate proteoglycan brevican associates with astrocytes ensheathing cerebellar glomeruli and inhibits neurite outgrowth from granule neurons. J Neurosci 1997 17 7784-7795 9315899
66. Xu X Fu AK Ip FC Wu CP Duan S Poo MM Yuan XB Ip NY Agrin regulates growth cone turning of Xenopus spinal motoneurons. Development 2005 132 4309 4316 10.1242/dev.02016 16141222
67. Gao PP Yue Y Zhang JH Cerretti DP Levitt P Zhou R Regulation of thalamic neurite outgrowth by the Eph ligand ephrin-A5: Implications in the development of thalamocortical projections. Proc Natl Acad Sci USA 1998 95 5329-5334 20260 9560275 10.1073/pnas.95.9.5329
68. Yue Y Widmer DA Halladay AK Cerretti DP Wagner GC Dreyer JL Zhou R Specification of distinct dopaminergic neural pathways: Roles of the Eph family receptor EphB1 and ligand ephrin-B2. J Neurosci 1999 19 2090-2101 10066262
69. Quach TT Duchemin AM Rogemond V Aguera M Honnorat J Belin MF Kolattukudy PE Involvement of collapsin response mediator proteins in the neurite extension induced by neurotrophins in dorsal root ganglion neurons. Mol Cell Neurosci 2004 25 433-443 10.1016/j.mcn.2003.11.006 15033171
70. DeBellard ME Tang S Mukhopadhyay G Shen YJ Filbin MT Myelin-associated glycoprotein inhibits axonal regeneration from a variety of neurons via interaction with a sialoglycoprotein. Mol Cell Neurosci 1996 7 89-101 101006/mcne.1996.0007 8731478
71. Gaudreault SB Blain JF Gratton JP Poirier J A role for caveolin-1 in post-injury reactive neuronal plasticity. J Neurochem 2005 92 831-839 10.1111/j.1471-4159.2004.02917.x 15686485
72. Rodriguez J Esteve P Weinl C Ruiz JM Fermin Y Trousse F Dwivedy A Holt C Bovolenta P SFRP1 regulates the growth of retinal ganglion cell axons through the Fz2 receptor. Nat Neurosci 2005 8 1301-1309 10.1038/nn1547 16172602
73. Meiners S Mercado ML Nur-e-Kamal MS Geller HM Tenascin-C contains domains that independently regulate neurite outgrowth and neurite guidance. J Neurosci 1999 19 8443-8453 10493745