-
1
-
-
8444232122
-
Transient complexes of redox proteins: structural and dynamic details from NMR studies
-
Prudencio M., and Ubbink M. Transient complexes of redox proteins: structural and dynamic details from NMR studies. J. Mol. Recognit. 17 (2004) 524-539
-
(2004)
J. Mol. Recognit.
, vol.17
, pp. 524-539
-
-
Prudencio, M.1
Ubbink, M.2
-
2
-
-
2442610947
-
The architecture of the binding site in redox protein complexes: implications for fast dissociation
-
Crowley P.B., and Carrondo M.A. The architecture of the binding site in redox protein complexes: implications for fast dissociation. Proteins Struct. Funct. Genet. 55 (2004) 603-612
-
(2004)
Proteins Struct. Funct. Genet.
, vol.55
, pp. 603-612
-
-
Crowley, P.B.1
Carrondo, M.A.2
-
4
-
-
0034280094
-
A redox-dependent interaction between two electron-transfer partners involved in photosynthesis
-
Morales R., Charon M.H., Kachalova G., Serre L., Medina M., Gómez-Moreno C., and Frey M. A redox-dependent interaction between two electron-transfer partners involved in photosynthesis. EMBO Rep. 1 (2000) 271-276
-
(2000)
EMBO Rep.
, vol.1
, pp. 271-276
-
-
Morales, R.1
Charon, M.H.2
Kachalova, G.3
Serre, L.4
Medina, M.5
Gómez-Moreno, C.6
Frey, M.7
-
5
-
-
0035951779
-
Adrenodoxin reductase-adrenodoxin complex structure suggests electron transfer path in steroid biosynthesis
-
Müller J.J., Lapko A., Bourenkov G., Ruckpaul K., and Heinemann U. Adrenodoxin reductase-adrenodoxin complex structure suggests electron transfer path in steroid biosynthesis. J. Biol. Chem. 276 (2001) 2786-2789
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 2786-2789
-
-
Müller, J.J.1
Lapko, A.2
Bourenkov, G.3
Ruckpaul, K.4
Heinemann, U.5
-
6
-
-
0028348664
-
Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102
-
Kikuchi Y., Nagata Y., Hinata M., Kimbara K., Fukuda M., Yano K., and Takagi M. Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102. J. Bacteriol. 176 (1994) 1689-1694
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1689-1694
-
-
Kikuchi, Y.1
Nagata, Y.2
Hinata, M.3
Kimbara, K.4
Fukuda, M.5
Yano, K.6
Takagi, M.7
-
7
-
-
0024562664
-
Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102
-
Kimbara K., Hashimoto T., Fukuda M., Koana T., Takagi M., Oishi M., and Yano K. Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102. J. Bacteriol. 171 (1989) 2740-2747
-
(1989)
J. Bacteriol.
, vol.171
, pp. 2740-2747
-
-
Kimbara, K.1
Hashimoto, T.2
Fukuda, M.3
Koana, T.4
Takagi, M.5
Oishi, M.6
Yano, K.7
-
8
-
-
0034387880
-
Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase
-
Senda T., Yamda T., Sakurai N., Kubota M., Nishizaki T., Masai E., et al. Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase. J. Mol. Biol. 304 (2000) 397-410
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 397-410
-
-
Senda, T.1
Yamda, T.2
Sakurai, N.3
Kubota, M.4
Nishizaki, T.5
Masai, E.6
-
9
-
-
1042264042
-
Crystal structure of putidaredoxin reductase from Pseudomonas putida, the final structural component of the cytochrome P450cam monooxygenase
-
Sevrioukova I.F., Li H., and Poulos T.L. Crystal structure of putidaredoxin reductase from Pseudomonas putida, the final structural component of the cytochrome P450cam monooxygenase. J. Mol. Biol. 336 (2004) 889-902
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 889-902
-
-
Sevrioukova, I.F.1
Li, H.2
Poulos, T.L.3
-
10
-
-
0033057396
-
The structure of adrenodoxin reductase of mitochondrial P450 systems: electron transfer for steroid biosynthesis
-
Ziegler G.A., Vonrhein C., Hanukoglu I., and Schulz G.E. The structure of adrenodoxin reductase of mitochondrial P450 systems: electron transfer for steroid biosynthesis. J. Mol. Biol. 289 (1999) 981-990
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 981-990
-
-
Ziegler, G.A.1
Vonrhein, C.2
Hanukoglu, I.3
Schulz, G.E.4
-
11
-
-
33745178068
-
Crystallization and preliminary X-ray analysis of the Rieske-type [2Fe-2S] ferredoxin component of biphenyl dioxygenase from Pseudomonas sp. strain KKS102
-
Senda M., Kimura S., Kishigami S., and Senda T. Crystallization and preliminary X-ray analysis of the Rieske-type [2Fe-2S] ferredoxin component of biphenyl dioxygenase from Pseudomonas sp. strain KKS102. Acta Crystallog. sect. F 62 (2006) 590-592
-
(2006)
Acta Crystallog. sect. F
, vol.62
, pp. 590-592
-
-
Senda, M.1
Kimura, S.2
Kishigami, S.3
Senda, T.4
-
12
-
-
0030826575
-
Semi-micro-scale frontal gel chromatography of interacting systems of a protein and small molecules: binding of warfarin, tryptophan, or FMN to albumin, and of o-nitrophenol to catechol 2,3-dioxygenase
-
Honjo M., Ishida T., and Horiike K. Semi-micro-scale frontal gel chromatography of interacting systems of a protein and small molecules: binding of warfarin, tryptophan, or FMN to albumin, and of o-nitrophenol to catechol 2,3-dioxygenase. J. Biochem. 122 (1997) 258-263
-
(1997)
J. Biochem.
, vol.122
, pp. 258-263
-
-
Honjo, M.1
Ishida, T.2
Horiike, K.3
-
13
-
-
0036242051
-
Accurate measurement of near-micromolar oxygen concentrations in aqueous solutions based on enzymatic extradiol cleavage of 4-chlorocatechol: applications to improved low-oxygen experimental systems and quantitative assessment of back diffusion of oxygen from the atmosphere
-
Nakajima H., Ishida T., Tanaka H., and Horiike K. Accurate measurement of near-micromolar oxygen concentrations in aqueous solutions based on enzymatic extradiol cleavage of 4-chlorocatechol: applications to improved low-oxygen experimental systems and quantitative assessment of back diffusion of oxygen from the atmosphere. J. Biochem. 131 (2002) 523-531
-
(2002)
J. Biochem.
, vol.131
, pp. 523-531
-
-
Nakajima, H.1
Ishida, T.2
Tanaka, H.3
Horiike, K.4
-
14
-
-
34249684863
-
Crystallization and preliminary X-ray analysis of the reduced Rieske-type [2Fe-2S] ferredoxin derived from Pseudomonas sp. strain KKS102
-
Senda M., Kishigami S., Kimura S., and Senda T. Crystallization and preliminary X-ray analysis of the reduced Rieske-type [2Fe-2S] ferredoxin derived from Pseudomonas sp. strain KKS102. Acta Crystallog. sect. F 63 (2007) 311-314
-
(2007)
Acta Crystallog. sect. F
, vol.63
, pp. 311-314
-
-
Senda, M.1
Kishigami, S.2
Kimura, S.3
Senda, T.4
-
15
-
-
34249945748
-
Crystallization and preliminary X-ray analysis of the electron-transfer complex of Rieske-type [2Fe-2S] ferredoxin and NADH-dependent ferredoxin reductase derived from Acidovorax sp. strain KKS102
-
Senda M., Kishigami S., Kimura S., and Senda T. Crystallization and preliminary X-ray analysis of the electron-transfer complex of Rieske-type [2Fe-2S] ferredoxin and NADH-dependent ferredoxin reductase derived from Acidovorax sp. strain KKS102. Acta Crystallog. sect. F 63 (2007) 520-523
-
(2007)
Acta Crystallog. sect. F
, vol.63
, pp. 520-523
-
-
Senda, M.1
Kishigami, S.2
Kimura, S.3
Senda, T.4
-
16
-
-
28044470079
-
High-resolution structure of the catalytic region of MICAL (molecular interacting with CasL), a multidomain flavoenzyme-signaling molecule
-
Siebold C., Berrow N., Walter T.S., Harlos K., Owens R.J., Stuart D.I., et al. High-resolution structure of the catalytic region of MICAL (molecular interacting with CasL), a multidomain flavoenzyme-signaling molecule. Proc. Natl Acad. Sci. USA 102 (2005) 16836-16841
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 16836-16841
-
-
Siebold, C.1
Berrow, N.2
Walter, T.S.3
Harlos, K.4
Owens, R.J.5
Stuart, D.I.6
-
17
-
-
0001209090
-
Flavin coenzymes: at the crossroads of biological redox chemistry
-
Walsh C. Flavin coenzymes: at the crossroads of biological redox chemistry. Acc. Chem. Res. 13 (1980) 148-155
-
(1980)
Acc. Chem. Res.
, vol.13
, pp. 148-155
-
-
Walsh, C.1
-
19
-
-
0028774535
-
Old yellow enzyme at 2 Å resolution: overall structure, ligand binding, and comparison with related flavoproteins
-
Fox K.M., and Karplus P.A. Old yellow enzyme at 2 Å resolution: overall structure, ligand binding, and comparison with related flavoproteins. Structure 2 (1994) 1089-1105
-
(1994)
Structure
, vol.2
, pp. 1089-1105
-
-
Fox, K.M.1
Karplus, P.A.2
-
20
-
-
0029903531
-
A theoretical study of the structures of flavin in different oxidation and protonation states
-
Zheng Y.J., and Ornstein R.L. A theoretical study of the structures of flavin in different oxidation and protonation states. J. Am. Chem. Soc. 118 (1996) 9402-9408
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 9402-9408
-
-
Zheng, Y.J.1
Ornstein, R.L.2
-
21
-
-
0032725979
-
Crystal structure of reduced thioredoxin reductase from Escherichia coli: structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor
-
Lennon B.W., Williams Jr. C.H., and Ludwig M.L. Crystal structure of reduced thioredoxin reductase from Escherichia coli: structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor. Protein Sci. 8 (1999) 2366-2379
-
(1999)
Protein Sci.
, vol.8
, pp. 2366-2379
-
-
Lennon, B.W.1
Williams Jr., C.H.2
Ludwig, M.L.3
-
24
-
-
0033619724
-
Refined X-ray structures of the oxidized, at 1.3 Å, and reduced, at 1.17 Å, [2Fe-2S] ferredoxin from the cyanobacterium Anabaena PCC7119 show redox-linked conformational changes
-
Morales R., Chron M.H., Hudry-Clergeon G., Pétillot Y., Norager S., Medina M., and Frey M. Refined X-ray structures of the oxidized, at 1.3 Å, and reduced, at 1.17 Å, [2Fe-2S] ferredoxin from the cyanobacterium Anabaena PCC7119 show redox-linked conformational changes. Biochemistry 38 (1999) 15764-15773
-
(1999)
Biochemistry
, vol.38
, pp. 15764-15773
-
-
Morales, R.1
Chron, M.H.2
Hudry-Clergeon, G.3
Pétillot, Y.4
Norager, S.5
Medina, M.6
Frey, M.7
-
25
-
-
14744286132
-
Redox-dependent structural reorganization in putidaredoxin, a vertebrate-type [2Fe-2S] ferredoxin from Pseudomonas putida
-
Sevrioukova I.F. Redox-dependent structural reorganization in putidaredoxin, a vertebrate-type [2Fe-2S] ferredoxin from Pseudomonas putida. J. Mol. Biol. 347 (2005) 607-621
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 607-621
-
-
Sevrioukova, I.F.1
-
26
-
-
0029004611
-
The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra
-
Gerstein M., Tsai J., and Levitt M. The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra. J. Mol. Biol. 249 (1995) 955-966
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 955-966
-
-
Gerstein, M.1
Tsai, J.2
Levitt, M.3
-
27
-
-
0034641677
-
+ and NADPH suggesting a mechanism for the electron transfer of an enzyme family
-
+ and NADPH suggesting a mechanism for the electron transfer of an enzyme family. Biochemistry 36 (2000) 10986-10995
-
(2000)
Biochemistry
, vol.36
, pp. 10986-10995
-
-
Ziegler, G.A.1
Schulz, G.E.2
-
28
-
-
0033521741
-
Molecular characterization of mitochondrial apoptosis-inducing factor
-
Susin S.A., Lorenzo H.K., Zamzami N., Marzo I., Snow B.E., Brothers G.M., et al. Molecular characterization of mitochondrial apoptosis-inducing factor. Nature 397 (1999) 441-446
-
(1999)
Nature
, vol.397
, pp. 441-446
-
-
Susin, S.A.1
Lorenzo, H.K.2
Zamzami, N.3
Marzo, I.4
Snow, B.E.5
Brothers, G.M.6
-
29
-
-
0002464602
-
Purification and crystallization of a ferredoxin reductase component of a biphenyl dioxygenase derived from Pseudomonas sp. strain KKS102
-
Yamada T., Sakurai N., Nishizaki T., Senda T., Masai E., Fukuda M., and Mitsui Y. Purification and crystallization of a ferredoxin reductase component of a biphenyl dioxygenase derived from Pseudomonas sp. strain KKS102. Protein Pept. Letters 7 (2000) 277-280
-
(2000)
Protein Pept. Letters
, vol.7
, pp. 277-280
-
-
Yamada, T.1
Sakurai, N.2
Nishizaki, T.3
Senda, T.4
Masai, E.5
Fukuda, M.6
Mitsui, Y.7
-
30
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallog. 26 (1993) 795-800
-
(1993)
J. Appl. Crystallog.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
31
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Sweet R.-M., and Carter Jr. C.-W. (Eds), Academic Press, New York
-
Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. In: Sweet R.-M., and Carter Jr. C.-W. (Eds). Methods in Enzymology: Macromolecular Crystallography vol. 276 (1997), Academic Press, New York 307-326
-
(1997)
Methods in Enzymology: Macromolecular Crystallography
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
32
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov G.N., Vagin A.A., and Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallog. sect. D 53 (1997) 240-255
-
(1997)
Acta Crystallog. sect. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
33
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative computational project Number 4
-
Collaborative computational project Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallog. sect. D 50 (1994) 760-763
-
(1994)
Acta Crystallog. sect. D
, vol.50
, pp. 760-763
-
-
-
34
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brünger A.T., Clore Adams.G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D 54 (1998) 905-921
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Clore, Adams.G.M.2
DeLano, W.L.3
Gros, P.4
Grosse-Kunstleve, R.W.5
Jiang, J.S.6
-
35
-
-
21744460379
-
Tolerance of the Rieske-type [2Fe-2S] cluster in recombinant ferredoxin BphA3 from Pseudomonas sp, KKS102 to histidine ligand mutations
-
Kimura S., Kikuchi A., Senda T., Shiro Y., and Fukuda M. Tolerance of the Rieske-type [2Fe-2S] cluster in recombinant ferredoxin BphA3 from Pseudomonas sp, KKS102 to histidine ligand mutations. Biochem. J. 388 (2005) 869-878
-
(2005)
Biochem. J.
, vol.388
, pp. 869-878
-
-
Kimura, S.1
Kikuchi, A.2
Senda, T.3
Shiro, Y.4
Fukuda, M.5
-
36
-
-
0000560808
-
MOLREP: an automated program for olecular replacement
-
Vagin A.A., and Teplyakov J. MOLREP: an automated program for olecular replacement. Appl. Crystallog. 30 (1997) 1022-1025
-
(1997)
Appl. Crystallog.
, vol.30
, pp. 1022-1025
-
-
Vagin, A.A.1
Teplyakov, J.2
-
37
-
-
0035788107
-
Pushing the boundaries of molecular replacement with maximum likelihood
-
Read R.J. Pushing the boundaries of molecular replacement with maximum likelihood. Acta Crystallog. sect. D 57 (2001) 1373-1382
-
(2001)
Acta Crystallog. sect. D
, vol.57
, pp. 1373-1382
-
-
Read, R.J.1
-
38
-
-
0034480510
-
A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins
-
Colbert C.L., Couture M.M., Eltis L.D., and Bolin J.T. A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins. Structure 8 (2000) 1267-1278
-
(2000)
Structure
, vol.8
, pp. 1267-1278
-
-
Colbert, C.L.1
Couture, M.M.2
Eltis, L.D.3
Bolin, J.T.4
-
39
-
-
0037779022
-
A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning
-
Padilla J.E., and Yeates T.O. A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning. Acta Crystallog. sect. D 59 (2003) 1124-1130
-
(2003)
Acta Crystallog. sect. D
, vol.59
, pp. 1124-1130
-
-
Padilla, J.E.1
Yeates, T.O.2
-
40
-
-
0002906346
-
-
Kluwer Academic Publishers, Dordrecht
-
Kleywegt G.J., Zou J.Y., Kjeldgaard M., and Jones T.A. International Tables for Crystallography vol. F; chapt. 17.1 (2001), Kluwer Academic Publishers, Dordrecht 353-356
-
(2001)
International Tables for Crystallography
, vol.F- chapt. 17.1
, pp. 353-356
-
-
Kleywegt, G.J.1
Zou, J.Y.2
Kjeldgaard, M.3
Jones, T.A.4
-
41
-
-
0030880598
-
SHELXL: High-resolution refinement
-
Carter Jr. C.W., and Sweet R.M. (Eds), Academic Press, New York
-
Sheldrick G., and Schneider T. SHELXL: High-resolution refinement. In: Carter Jr. C.W., and Sweet R.M. (Eds). Methods in Enzymology: Macromolecular Crystallography vol. 277 (1997), Academic Press, New York 319-343
-
(1997)
Methods in Enzymology: Macromolecular Crystallography
, vol.277
, pp. 319-343
-
-
Sheldrick, G.1
Schneider, T.2
|