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Volumn 1, Issue 5, 2006, Pages 2297-2304

Chemical cleavage of mismatch (CCM) to locate base mismatches in heteroduplex DNA

Author keywords

[No Author keywords available]

Indexed keywords

DIAGNOSTIC AGENT; DNA; HETERODUPLEX; HYDROXYLAMINE; PERMANGANATE POTASSIUM;

EID: 34548824049     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2006.352     Document Type: Article
Times cited : (12)

References (22)
  • 1
    • 0019332029 scopus 로고
    • Pyrimidine-specific chemical reactions useful for DNA sequencing
    • Rubin, C.M. & Schmid, C.W. Pyrimidine-specific chemical reactions useful for DNA sequencing. Nucl. Acid Res. 8, 4613-4619 (1980).
    • (1980) Nucl. Acid Res , vol.8 , pp. 4613-4619
    • Rubin, C.M.1    Schmid, C.W.2
  • 2
    • 0000520709 scopus 로고
    • Comparative DNA sequencing by denaturing high-performance liquid chromatography (DHPLC)
    • Oefner, P.J. & Underhill, P.A. Comparative DNA sequencing by denaturing high-performance liquid chromatography (DHPLC). Am. J. Hum. Genet. 57, A266 (1995).
    • (1995) Am. J. Hum. Genet , vol.57
    • Oefner, P.J.1    Underhill, P.A.2
  • 3
    • 0023476285 scopus 로고
    • Detection and localization of single base changes by denaturing gradient gel electrophoresis
    • Myers, R.M., Maniatis, T. & Lerman, L.S. Detection and localization of single base changes by denaturing gradient gel electrophoresis. Methods Enzymol. 155, 501-527 (1987).
    • (1987) Methods Enzymol , vol.155 , pp. 501-527
    • Myers, R.M.1    Maniatis, T.2    Lerman, L.S.3
  • 4
    • 0024595101 scopus 로고
    • Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms
    • Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K. & Sekiya, T. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86, 2766-2770 (1989).
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2766-2770
    • Orita, M.1    Iwahana, H.2    Kanazawa, H.3    Hayashi, K.4    Sekiya, T.5
  • 5
    • 1042265184 scopus 로고    scopus 로고
    • Novel TP53 gene mutations in tumors of Russian patients with breast cancer detected using a new solid phase chemical cleavage of mismatch method and identified by sequencing
    • Lambrinakos, A. et al. Novel TP53 gene mutations in tumors of Russian patients with breast cancer detected using a new solid phase chemical cleavage of mismatch method and identified by sequencing. Hum. Mut. 23, 186-192 (2004).
    • (2004) Hum. Mut , vol.23 , pp. 186-192
    • Lambrinakos, A.1
  • 6
    • 0036022075 scopus 로고    scopus 로고
    • High sensitivity of detection of TP53 somatic mutations by fluorescence-assisted mismatch analysis
    • Tessitore, A. et al. High sensitivity of detection of TP53 somatic mutations by fluorescence-assisted mismatch analysis. Genes Chromosomes Cancer 35, 86-91 (2002).
    • (2002) Genes Chromosomes Cancer , vol.35 , pp. 86-91
    • Tessitore, A.1
  • 7
    • 0024021305 scopus 로고
    • Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations
    • Cotton, R.G., Rodrigues, N.R. & Campbell, R.D. Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations. Proc. Natl. Acad. Sci. USA 85, 4397-4401 (1988).
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 4397-4401
    • Cotton, R.G.1    Rodrigues, N.R.2    Campbell, R.D.3
  • 8
    • 0027728001 scopus 로고
    • Analysis of sequence contexts T•G mismatches leads to predictions about reactivity of the mismatched TG to osmium tetroxide
    • Cotton, R.G. et al. Analysis of sequence contexts T•G mismatches leads to predictions about reactivity of the mismatched TG to osmium tetroxide. DNA Cell Biol. 12, 945-949 (1993).
    • (1993) DNA Cell Biol , vol.12 , pp. 945-949
    • Cotton, R.G.1
  • 9
    • 0030791118 scopus 로고    scopus 로고
    • Potassium permanganate and tetraethylammonium chloride are a safe and effective substitute for osmium tetroxide in solid-phase fluorescent chemical cleavage of mismatch
    • Roberts, E., Deeble, V.J., Woods, C.G. & Taylor, G.R. Potassium permanganate and tetraethylammonium chloride are a safe and effective substitute for osmium tetroxide in solid-phase fluorescent chemical cleavage of mismatch. Nucleic Acids Res. 25, 3377-3378 (1997).
    • (1997) Nucleic Acids Res , vol.25 , pp. 3377-3378
    • Roberts, E.1    Deeble, V.J.2    Woods, C.G.3    Taylor, G.R.4
  • 10
    • 0028348715 scopus 로고
    • Efficient detection of point mutations on color-coded strands of target DNA
    • Verpy, E., Biasotto, M., Meo, T. & Tosi, M. Efficient detection of point mutations on color-coded strands of target DNA. Proc. Natl. Acad. Sci. USA 91, 1873-1877 (1994).
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1873-1877
    • Verpy, E.1    Biasotto, M.2    Meo, T.3    Tosi, M.4
  • 11
    • 0029593548 scopus 로고
    • Ultrarapid mutation detection by multiplex, solid-phase chemical cleavage
    • Rowley, G., Saad, S., Giannelli, F. & Green, P.M. Ultrarapid mutation detection by multiplex, solid-phase chemical cleavage. Genomics 30, 574-582 (1995).
    • (1995) Genomics , vol.30 , pp. 574-582
    • Rowley, G.1    Saad, S.2    Giannelli, F.3    Green, P.M.4
  • 12
    • 0033560714 scopus 로고    scopus 로고
    • Reactivity of potassium permanganate and tetraethylammonium chloride with mismatched bases and a simple mutation detection protocol
    • Lambrinakos, A., Humphrey, K.E., Babon, J.J., Ellis, T.P. & Cotton, R.G. Reactivity of potassium permanganate and tetraethylammonium chloride with mismatched bases and a simple mutation detection protocol. Nucleic Acids Res. 27, 1866-1874 (1999).
    • (1999) Nucleic Acids Res , vol.27 , pp. 1866-1874
    • Lambrinakos, A.1    Humphrey, K.E.2    Babon, J.J.3    Ellis, T.P.4    Cotton, R.G.5
  • 13
    • 0029014599 scopus 로고
    • Detection of mutations in ectopic factor VIII transcripts from nine haemophilia A patients and the correlation with phenotype
    • Bidichandani, S.I., Lanyon, W.G., Shiach, C.R., Lowe, G.D. & Connor, J.M. Detection of mutations in ectopic factor VIII transcripts from nine haemophilia A patients and the correlation with phenotype. Hum. Genet. 95, 531-538 (1995).
    • (1995) Hum. Genet , vol.95 , pp. 531-538
    • Bidichandani, S.I.1    Lanyon, W.G.2    Shiach, C.R.3    Lowe, G.D.4    Connor, J.M.5
  • 14
    • 0029886287 scopus 로고    scopus 로고
    • Mutations in a subgroup of patients with mild haemophilia A and a familial discrepancy between the one-stage and two-stage factor VIII:C methods
    • Rudzki, Z. et al. Mutations in a subgroup of patients with mild haemophilia A and a familial discrepancy between the one-stage and two-stage factor VIII:C methods. Br. J. Haematol. 94, 400-406 (1996).
    • (1996) Br. J. Haematol , vol.94 , pp. 400-406
    • Rudzki, Z.1
  • 15
    • 0024605060 scopus 로고
    • Direct detection of point mutations by mismatch analysis: Application to haemophilia B
    • Montandon, A.J., Green, P.M., Giannelli, F. & Bentley, D.R. Direct detection of point mutations by mismatch analysis: Application to haemophilia B. Nucleic Acids Res. 11, 3347-3358 (1989).
    • (1989) Nucleic Acids Res , vol.11 , pp. 3347-3358
    • Montandon, A.J.1    Green, P.M.2    Giannelli, F.3    Bentley, D.R.4
  • 16
    • 0029816014 scopus 로고    scopus 로고
    • Exhaustive mutation scanning by fluorescence-assisted mismatch analysis discloses new genotype-phenotype correlations in angiodema
    • Verpy, E. et al. Exhaustive mutation scanning by fluorescence-assisted mismatch analysis discloses new genotype-phenotype correlations in angiodema. Am. J. Hum. Genet. 59, 308-319 (1996).
    • (1996) Am. J. Hum. Genet , vol.59 , pp. 308-319
    • Verpy, E.1
  • 17
    • 0025821421 scopus 로고
    • Mutation detection in phenylketonuria by using chemical cleavage of mismatch: Importance of using probes from both normal and patient samples
    • Forrest, S.M., Dahl, H.H., Howells, D.W., Dianzani, I. & Cotton, R.G. Mutation detection in phenylketonuria by using chemical cleavage of mismatch: Importance of using probes from both normal and patient samples. Am. J. Hum. Genet. 49, 175-183 (1991).
    • (1991) Am. J. Hum. Genet , vol.49 , pp. 175-183
    • Forrest, S.M.1    Dahl, H.H.2    Howells, D.W.3    Dianzani, I.4    Cotton, R.G.5
  • 18
    • 0029038949 scopus 로고
    • No evidence that common allelic variation in the Amyloid Precursor Protein (APP) gene confers susceptibility to Alzheimer's disease
    • Liddell, M.B., Bayer, A.J. & Owen, M.J. No evidence that common allelic variation in the Amyloid Precursor Protein (APP) gene confers susceptibility to Alzheimer's disease. Hum. Mol. Genet. 4, 853-858 (1995).
    • (1995) Hum. Mol. Genet , vol.4 , pp. 853-858
    • Liddell, M.B.1    Bayer, A.J.2    Owen, M.J.3
  • 19
    • 33745595079 scopus 로고    scopus 로고
    • Novel P53 mutations detected by FAMA in colorectal cancers, vii78-vii83
    • De Galitiis, F. et al. Novel P53 mutations detected by FAMA in colorectal cancers. Ann. Oncol. 17, vii78-vii83 (2006).
    • (2006) Ann. Oncol , vol.17
    • De Galitiis, F.1
  • 20
    • 33745077708 scopus 로고    scopus 로고
    • Scanning the ocular albinism 1 (OA1) gene for polymorphisms in congenital nystagmus by DHPLC
    • Sallmann, G.B. et al. Scanning the ocular albinism 1 (OA1) gene for polymorphisms in congenital nystagmus by DHPLC. Ophthalmic Genet. 27, 43-49 (2006).
    • (2006) Ophthalmic Genet , vol.27 , pp. 43-49
    • Sallmann, G.B.1
  • 22
    • 0028899568 scopus 로고
    • Screening formutations by enzymemismatch cleavage using T4 endonuclease VII
    • Youil, R., Kemper, B.W. & Cotton, R.G.H. Screening formutations by enzymemismatch cleavage using T4 endonuclease VII. Proc. Natl. Acad. Sci. USA 92, 87-91 (1995).
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 87-91
    • Youil, R.1    Kemper, B.W.2    Cotton, R.G.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.