-
2
-
-
0032849109
-
Detoxification of environmental mutagens and carcinogens: Structure, mechanism, and evolution of liver epoxide hydrolase
-
Argiriadi M A, Morisseau C, Hammock B D and Christianson D W 1999 Detoxification of environmental mutagens and carcinogens: structure, mechanism, and evolution of liver epoxide hydrolase; Proc. Natl. Acad. Sci. USA 96 10637-10642
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10637-10642
-
-
Argiriadi, M.A.1
Morisseau, C.2
Hammock, B.D.3
Christianson, D.W.4
-
3
-
-
0033596908
-
Cooperative fluctuations and subunit communication in tryptophan synthase
-
Bahar I and Jernigan R L 1999 Cooperative fluctuations and subunit communication in tryptophan synthase; Biochemistry 38 3478-3490
-
(1999)
Biochemistry
, vol.38
, pp. 3478-3490
-
-
Bahar, I.1
Jernigan, R.L.2
-
4
-
-
25844431698
-
Coarse-grained normal mode analysis in structural biology
-
Bahar I and Rader A J 2005 Coarse-grained normal mode analysis in structural biology; Curr. Opin. Struct. Biol. 15 586-592
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 586-592
-
-
Bahar, I.1
Rader, A.J.2
-
6
-
-
33644843079
-
Accounting for loop flexibility during protein-protein docking
-
Bastard K, Prevost C and Zacharias M 2006 Accounting for loop flexibility during protein-protein docking; Proteins 62 956-969
-
(2006)
Proteins
, vol.62
, pp. 956-969
-
-
Bastard, K.1
Prevost, C.2
Zacharias, M.3
-
7
-
-
0033954256
-
The Protein Data Bank
-
Berman H M, Westbrook J, Feng Z, Gilliland G, Bhat T N, Weissig H, Shindyalov I N and Bourne P E 2000 The Protein Data Bank; Nucleic Acids Res. 28 235-242
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
8
-
-
25844440811
-
Elastic network models for understanding biomolecular machinery: From enzymes to supramolecular assemblies
-
Chennubhotla C, Rader A J, Yang L W and Bahar I 2005 Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies; Phys. Biol. 2 S173-S180
-
(2005)
Phys. Biol
, vol.2
-
-
Chennubhotla, C.1
Rader, A.J.2
Yang, L.W.3
Bahar, I.4
-
9
-
-
0030064676
-
DNA: An extensible molecule
-
Cluzel P, Lebrun A, Heller C, Lavery R, Viovy J L, Chatenay D and Caron F 1996 DNA: an extensible molecule; Science 271 792-794
-
(1996)
Science
, vol.271
, pp. 792-794
-
-
Cluzel, P.1
Lebrun, A.2
Heller, C.3
Lavery, R.4
Viovy, J.L.5
Chatenay, D.6
Caron, F.7
-
12
-
-
31944436148
-
Protein structure by mechanical triangulation
-
Dietz H and Rief M 2006 Protein structure by mechanical triangulation; Proc. Natl. Acad. Sci. USA 103 1244-1247
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 1244-1247
-
-
Dietz, H.1
Rief, M.2
-
13
-
-
0037022347
-
Flexibility and packing in proteins
-
Halle B 2002 Flexibility and packing in proteins; Proc. Natl. Acad. Sci. USA 99 1274-1279
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1274-1279
-
-
Halle, B.1
-
15
-
-
0036154101
-
Functional motions of influenza virus hemagglutinin: A structure-based analytical approach
-
Isin B, Doruker P and Bahar I 2002 Functional motions of influenza virus hemagglutinin: a structure-based analytical approach; Biophys. J. 82 569-581
-
(2002)
Biophys. J
, vol.82
, pp. 569-581
-
-
Isin, B.1
Doruker, P.2
Bahar, I.3
-
17
-
-
0001266102
-
A three-dimensional model of the myoglobin molecule obtained by x-ray analysis
-
Kendrew J C, Bodo G, Dintzis H M, Parrish R G, Wyckoff H and Phillips D C 1958 A three-dimensional model of the myoglobin molecule obtained by x-ray analysis; Nature (London) 181 662-666
-
(1958)
Nature (London)
, vol.181
, pp. 662-666
-
-
Kendrew, J.C.1
Bodo, G.2
Dintzis, H.M.3
Parrish, R.G.4
Wyckoff, H.5
Phillips, D.C.6
-
20
-
-
0030992537
-
Local DNA stretching mimics the distortion caused by the TATA box-binding protein
-
Lebrun A, Shakked Z and Lavery R 1997 Local DNA stretching mimics the distortion caused by the TATA box-binding protein; Proc. Natl. Acad. Sci. USA 94 2993-2998
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2993-2998
-
-
Lebrun, A.1
Shakked, Z.2
Lavery, R.3
-
21
-
-
4444251032
-
Probing protein mechanics: Residue-level properties and their use in defining domains
-
Navizet I, Cailliez F and Lavery R 2004 Probing protein mechanics: residue-level properties and their use in defining domains; Biophys. J. 87 1426-1435
-
(2004)
Biophys. J
, vol.87
, pp. 1426-1435
-
-
Navizet, I.1
Cailliez, F.2
Lavery, R.3
-
22
-
-
1442328108
-
Advances in biomolecular simulations: Methodology and recent applications
-
Norberg J and Nilsson L 2003 Advances in biomolecular simulations: methodology and recent applications; Q. Rev. Biophys. 36 257-306
-
(2003)
Q. Rev. Biophys
, vol.36
, pp. 257-306
-
-
Norberg, J.1
Nilsson, L.2
-
23
-
-
1642452665
-
Analyzing protein-DNA recognition mechanisms
-
Paillard G and Lavery R 2004 Analyzing protein-DNA recognition mechanisms; Structure (Camb.) 12 113-122
-
(2004)
Structure (Camb.)
, vol.12
, pp. 113-122
-
-
Paillard, G.1
Lavery, R.2
-
24
-
-
70449309280
-
Structure of hemoglobin
-
Perutz M F 1960 Structure of hemoglobin; Brookhaven Symp. Biol. 13 165-183
-
(1960)
Brookhaven Symp. Biol
, vol.13
, pp. 165-183
-
-
Perutz, M.F.1
-
25
-
-
0345864027
-
The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
-
Porter C T, Bartlett G J and Thornton J M 2004 The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data; Nucleic Acids Res. 32 D129-D133
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Porter, C.T.1
Bartlett, G.J.2
Thornton, J.M.3
-
26
-
-
0032496419
-
Protein folding and protein evolution: Common folding nucleus in different subfamilies of c-type cytochromes?
-
Ptitsyn, O. B. (1998) Protein folding and protein evolution: common folding nucleus in different subfamilies of c-type cytochromes?; J Mol Biol 278 655-666
-
(1998)
J Mol Biol
, vol.278
, pp. 655-666
-
-
Ptitsyn, O.B.1
-
27
-
-
33846512402
-
-
Rueda M, Ferrer-Costa C, Meyer T, Perez A, Camps J, Hospital A, Gelpi J L and Orozco M 2007 A consensus view of protein dynamics; Proc. Natl. Acad. Sci. USA 104 796-801
-
Rueda M, Ferrer-Costa C, Meyer T, Perez A, Camps J, Hospital A, Gelpi J L and Orozco M 2007 A consensus view of protein dynamics; Proc. Natl. Acad. Sci. USA 104 796-801
-
-
-
-
28
-
-
33947393946
-
Locating the active sites of enzymes using mechanical properties
-
Sacquin-Mora S, Laforet E and Lavery R 2007 Locating the active sites of enzymes using mechanical properties; Proteins 67 350-359
-
(2007)
Proteins
, vol.67
, pp. 350-359
-
-
Sacquin-Mora, S.1
Laforet, E.2
Lavery, R.3
-
29
-
-
33646200456
-
Investigating the local flexibility of functional residues in hemoproteins
-
Sacquin-Mora S and Lavery R 2006 Investigating the local flexibility of functional residues in hemoproteins; Biophys. J. 90 2706-2717
-
(2006)
Biophys. J
, vol.90
, pp. 2706-2717
-
-
Sacquin-Mora, S.1
Lavery, R.2
-
30
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion M M 1996 Large amplitude elastic motions in proteins from a single-parameter, atomic analysis; Phys. Rev. Lett. 77 1905-1908
-
(1996)
Phys. Rev. Lett
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
31
-
-
17044393884
-
Coarse-grained models for proteins
-
Tozzini V 2005 Coarse-grained models for proteins; Curr. Opin. Struct. Biol. 15 144-150
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 144-150
-
-
Tozzini, V.1
-
32
-
-
0034701222
-
Molecular dynamics simulations of nucleic acids with a generalized born solvation model
-
Tsui V and Case D A 2000 Molecular dynamics simulations of nucleic acids with a generalized born solvation model; J. Am. Chem. Soc. 122 2489-2498
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 2489-2498
-
-
Tsui, V.1
Case, D.A.2
-
33
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang J M, Cieplak P and Kollman P A 2000 How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?; J. Comput. Chem. 21 1049-1074
-
(2000)
J. Comput. Chem
, vol.21
, pp. 1049-1074
-
-
Wang, J.M.1
Cieplak, P.2
Kollman, P.A.3
-
34
-
-
20444409186
-
Coupling between catalytic site and collective dynamics: A requirement for mechanochemical activity of enzymes
-
Yang L W and Bahar I 2005 Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes; Structure 13 893-904
-
(2005)
Structure
, vol.13
, pp. 893-904
-
-
Yang, L.W.1
Bahar, I.2
-
35
-
-
0037316987
-
Flexibility analysis of enzyme active sites by crystallographic temperature factors
-
Yuan Z, Zhao J and Wang Z X 2003 Flexibility analysis of enzyme active sites by crystallographic temperature factors; Protein Engg. 16 109-114
-
(2003)
Protein Engg
, vol.16
, pp. 109-114
-
-
Yuan, Z.1
Zhao, J.2
Wang, Z.X.3
-
36
-
-
0038583687
-
Protein-protein docking with a reduced protein model accounting for side-chain flexibility
-
Zacharias M 2003 Protein-protein docking with a reduced protein model accounting for side-chain flexibility; Protein Sci. 12 1271-128
-
(2003)
Protein Sci
, vol.12
, pp. 1271-1128
-
-
Zacharias, M.1
|