Nonuniformly communicating noncontiguous data: A case study with PETSc and MPI

Proceedings - 21st International Parallel and Distributed Processing Symposium, IPDPS 2007; Abstracts and CD-ROM

Volumn , Issue , 2007, Pages

  Balaji, P ^a   Buntinas, D ^a   Balay, S ^a   Smith, B ^a   Thakur, R ^a   Gropp, W ^a  

^a ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABSTRACTING; COMPUTER SOFTWARE; DIGITAL LIBRARIES; ENGINEERS; LAPLACE EQUATION; THREE DIMENSIONAL;

COMMUNICATION LIBRARY; MATHEMATICAL OPERATIONS; SOFTWARE LIBRARIES;

PARALLEL PROCESSING SYSTEMS;

EID: 34548784885     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IPDPS.2007.370223     Document Type: Conference Paper

References (24)

1. S. Balay, K. Buschelman, W. Gropp, D. Kaushik, M. G. Knepley, L. C. McInnes, B. F. Smith, and H. Zhang. PETSc Web page, 2001. http://www.mcs.anl. gov/petsc.
2. S. Balay, W. D. Gropp, L. C. McInnes, and B. F. Smith. Efficient management of parallelism in object oriented numerical software libraries. In E. Arge, A. M. Bruaset, and H. P. Langtangen, editors, Modern Software Tools in Scientific Computing, pages 163-202. Birkhäuser Press, 1997.
3. L. S. Blackford, J. Choi, A. Cleary, E. D'Azevedo, J. Demmel, I. Dhillon, J. Dongarra, S. Hammarling, G. Henry, A. Petitet, K. Stanley, D. Walker, and R. C. Whaley. ScaLAPACK Users' Guide. Society for Industrial and Applied Mathematics, 1997.
4. S. Byna, W. Gropp, X.-H. Sun, and R. Thakur. Improving the Performance of MPI Derived Datatypes by Optimizing Memory Access Costs. In SC, 2003.
5. A. Faraj and X. Yuan. Automatic Generation and Tuning of MPI Collective Communication Routines. In ICS, 2005.
6. MPI Forum. MPI: A Message Passing Interface. In SC, 1993.
7. W. Gropp, E. Lusk, and D. Swider. Improving the Performance of MPI Derived Datatypes. In MPIDC, 1999.
8. Han and Finkel. An optimal scheme for disseminating information. In ICPP, 1988.
9. C. T. Ho and S. L. Johnsson. Distributed Routing Algorithms for Broadcasting and Personalized Communication in Hypercubes. In ICPP, 1986.
10. W. Huang, G. Santhanaraman, H. W. Jin, Q. Gao, and D. K. Panda. Design of High Performance MVAPICH2: MPI2 over InfiniBand. In CCGRID, 2006.
11. M. Jacunski, P. Sadayappan, and D. K. Panda. All-to-All Broadcast on Switch-Based Clusters of Workstations. In IPDPS, 1999.
12. S. L. Johnsson and C.-T. Ho. Optimum Broadcasting and Personalized Communication in Hypercubes. IEEE TC, 1989.
13. Manoj Kumar. Supporting Broadcast Connections in Benes Networks. Technical Report RC 14063, IBM Research, May 1988.
14. S. Lee and K. G. Shin. Interleaved All-to-all Reliable Broadcast On Meshes and Hypercubes. In ICPP, 1990.
15. A. Mamidala, J. Liu, and D. K. Panda. Efficient Barrier and Allreduce on IBA clusters using Hardware Multicast and Adaptive Algorithms. In Cluster, 2004.
16. A. Moody, F. Petrini, and D. K. Panda. Efficient Reduce Algorithms on the Quadrics Network. In IPDPS, 2002.
17. MPICH2. http://www.mcs.anl.gov/mpi/
18. R. Ross, N. Miller, and W. Gropp. Implementing Fast and Reusable Datatype Processing. In EuroPVM/MPI, 2003.
19. G. Santhanaraman, J. Wu, and D. K. Panda. Zero-Copy MPI Derived Datatype Communication over InfiniBand. In EuroPVM/MPI, Sep 2004.
20. V. S. Sunderam. PVM: A Framework for Parallel and Distributed Computing. Concurrency: Practice and Experience, 2(4):315-339, December 1990.
21. S. Sur, U. Bondhugula, A. Mamidala, H.-W. Jin, and D. K. Panda. High Performance RDMA Based All-to-all Broadcast for InfiniBand Clusters. In HiPC, 2005.
22. S. Sur, H. W. Jin, and D. K. Panda. Efficient and Scalable All-to-All Exchange for InfiniBand-based Clusters. In ICPP, 2004.
23. V. Tipparaju, G. Santhanaraman, J. Nieplocha, and D. K. Panda. Hostassisted Zero-copy Remote Memory Access Communication on Infini-Band. In IPDPS, 2004.
24. J. Wu, P. Wyckoff, and D. K. Panda. High Performance Implementation of MPI Datatype Communication over InfiniBand. In IPDPS, 2004.