Development of a Time-Resolved Method for Photodissociation Mechanistic Study of Protonated Peptides: Use of a Voltage-Floated Cell in a Tandem Time-of-Flight Mass Spectrometer

Journal of the American Society for Mass Spectrometry

Volumn 18, Issue 10, 2007, Pages 1729-1739

  Yoon, So Hee ^a   Kim, Myung Soo ^a  

^a Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRIC POTENTIAL; IRRADIATION; MASS SPECTROMETERS; PHOTODISSOCIATION;

TIME RESOLVED METHOD;

PEPTIDES;

ARTICLE; CALCULATION; CELL; DEVICE; DISSOCIATION; ELECTRIC POTENTIAL; EQUIPMENT; LASER; MASS SPECTROMETER; PHOTODISSOCIATION; PROTON TRANSPORT; TANDEM MASS SPECTROMETRY; TANDEM TIME OF FLIGHT MASS SPECTROMETER; TIME; VOLTAGE FLOATED CELL;

EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; IONS; LIGHT; PEPTIDE MAPPING; PEPTIDES; PHOTOCHEMISTRY; PROTONS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 34548693180     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2007.07.010     Document Type: Article

References (39)

1. Busch K.L., Glish G.L., and McLuckey S.A. Mass Spectrometry/Mass Spectrometry (1988), VCH, New York
2. Hillenkamp F., Karas M., Beavis R.C., and Chait B.T. Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry of Biopolymers. Anal. Chem. 63 (1991) 1193A-1203A
3. Kebarle P., and Ho Y. On the Mechanism of Electrospray Mass Spectrometry. In: Cole R.B. (Ed). Electrospray Ionization Mass Spectrometry (1997), Wiley-Interscience, New York 3-64
4. In: McLafferty F.W. (Ed). Tandem Mass Spectrometry (1983), Wiley-Interscience, New York 125-174
5. Cooks R.G. Collision-Induced Dissociation of Polyatomic Ions. In: Cooks R.G. (Ed). Collision Spectroscopy (1978), Plenum, New York 357-450
6. Mabud M.D.A., Dekrey M.J., and Cooks R.G. Surface-Induced Dissociation of Molecular Ions. Int. J. Mass Spectrom. Ion Phys. 67 (1985) 285-294
7. Laskin J., and Furtrell J.H. Collisional Activation of Peptide Ions in FT-ICR Mass Spectrometry. Mass Spectrom. Rev. 22 (2003) 158-181
8. Laskin J., and Furtrell J.H. Activation of Large Ions in FT-ICR Mass Spectrometry. Mass Spectrom. Rev. 24 (2005) 135-167
9. Cooper H.J., Håkansson K., and Marshall A.G. The Role of Electron Capture Dissociation in Biomolecular Analysis. Mass Spectrom. Rev. 24 (2005) 201-222
10. Zubarev R.A., Horn D.M., Fridriksson E.K., Keller N.L., Kruger N.A., Lewis M.A., Carpenter B.K., and McLafferty F.W. Electron Capture Dissociation for Structural Characterization of Multiply Charged Protein Cations. Anal. Chem. 72 (2000) 563-573
11. Kaufmann R., Kirsch D., and Spengler B. Sequencing of Peptides in a Time-of-Flight Mass Spectrometer: Evaluation of Postsource Decay Following Matrix-Assisted Laser Desorption Ionization (MALDI). Int. J. Mass Spectrom. Ion Processes 131 (1994) 355-385
12. In: Bowers M.T. (Ed). Gas Phase Ion Chemistry, vol. 3, Ions and Light (1984), Academic Press, Orlando, FL
13. In: Miller T.A., and Bondybey V.E. (Eds). Molecular Ions: Spectroscopy, Structure and Chemistry (1983), North-Holland, Amsterdam
14. Bowers W.D., Delbert S.S., Hunter R.L., and McIver Jr. R.T. Fragmentation of Oligopeptide Ions Using Ultraviolet Laser Radiation and Fourier Transform Mass Spectrometry. J. Am. Chem. Soc. 106 (1984) 7288-7289
15. Williams E.R., Furlong J.J., and McLafferty F.W. Efficiency of Collisionally-Activated Dissociation and 193-nm Photodissociation of Peptide Ions in Fourier Transform Mass Spectrometry. J. Am. Soc. Mass Spectrom. 1 (1990) 288-294
16. Tecklenburg R.E., Miller Jr. M.N., and Russell D.H. Laser Ion Beam Photodissociation Studies of Model Amino Acids and Peptides. J. Am. Chem. Soc. 111 (1989) 1161-1171
17. Barbacci D.C., and Russell D.H. Sequence and Side-Chain Specific Photofragment (193 nm) Ions from Protonated Substance P by Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry. J. Am. Soc. Mass Spectrom. 10 (1999) 1038-1040
18. Thompson M.S., Cui W., and Reilly J.P. Fragmentation of Singly Charged Peptide Ions by Photodissociation at λ = 157 nm. Angew. Chem. Int. Ed. 43 (2004) 4791-4794
19. Cui W., Thomson M.S., and Reilly J.P. Pathways of Peptide Ion Fragmentation Induced by Vacuum Ultraviolet Light. J. Am. Soc. Mass Spectrom. 16 (2005) 1384-1398
20. Oh J.Y., Moon J.H., and Kim M.S. Tandem Time-of-Flight Mass Spectrometer for Photodissociation of Biopolymer Ions Generated by Matrix-Assisted Laser Desorption Ionization (MALDI-TOF-PD-TOF) Using a Linear-Plus-Quadratic Potential Reflectron. J. Am. Soc. Mass Spectrom. 15 (2004) 1248-1259
21. Moon J.H., Yoon S.H., and Kim M.S. Photodissociation of Singly Protonated Peptides at 193 nm Investigated with Tandem Time-of-Flight Mass Spectrometry. Rapid Commun. Mass Spectrom. 19 (2005) 3248-3252
22. Choi K.M., Yoon S.H., Sun M., Oh J.Y., Moon J.H., and Kim M.S. Characteristics of Photodissociation at 193 nm of Singly Protonated Peptides Generated by Matrix-Assisted Laser Desorption Ionization (MALDI). J. Am. Soc. Mass Spectrom. 17 (2006) 1643-1653
23. Moon J.H., Shin Y.S., Cha H.J., and Kim M.S. Photodissociation at 193 nm of Some Singly Protonated Peptides and Proteins with 2000-9000 Using a Tandem Time-of-Flight Mass Spectrometer Equipped with a Second Source for Delayed Extraction/Post-Acceleration of Product Ions. Rapid Commun. Mass Spectrom. 21 (2007) 359-368
24. Yoon T.O., Choi C.M., Kim H.J., and Kim N.J. Photo-Induced Dissociation of Protonated Peptide Ions in a Quardrupole Ion Trap Time-of-Flight Mass Spectrometer. Bull. Korean Chem. Soc. 28 (2007) 619-623
25. Moon J.H., Yoon S.H., and Kim M.S. Construction of an Improved Tandem Time-of-Flight Mass Spectrometer for Photodissociation of Ions Generated by Matrix-Assisted Laser Desorption Ionization (MALDI). Bull. Korean Chem. Soc. 26 (2005) 763-768
26. Biemann K. Sequencing of Peptides by Tandem Mass Spectrometry on High-Energy Collison-Induced Dissociation. In: McCloskey J.A. (Ed). Methods in Enzymology, vol. 193, Mass Spectrometry (1990), Academic Press, New York 455-479
27. + Ions of Peptides. Side Chain Specific Sequence Ions. Int. J. Mass Spectrom. Ion Processes 86 (1988) 137-154
28. Gu S., and Chen X. Precise Proteomic Identification Using Mass Spectrometry Coupled with Stable Isotope Labeling. Analyst 130 (2005) 1225-1231
29. 2 Ions. Rapid Commun. Mass Spectrom. 16 (2002) 375-389
30. Zewail A.H. Femtochemistry: Ultrafast Dynamics of the Chemical Bond vol. I (1994), World Scientific, Singapore
31. Choi J.C., and Kim M.S. Photodissociation Kinetics of the p-Nitrotoluene Molecular Ion on a Nanosecond Time Scale. J. Phys. Chem. 95 (1991) 50-56
32. Choi J.C., and Kim M.S. Photodissociation of n-Heptane Molecular Ion: Real-Time Investigation of Consecutive Reactions. J. Phys. Chem. 96 (1992) 726-732
33. Morgan J.W., and Russell D.H. Comparative Studies of 193-nm Photodissociation and TOF-TOFMS Analysis of Bradykinin Analogues: The Effects of Charge Site(s) and Fragmentation Timescales. J. Am. Soc. Mass Spectrom. 17 (2006) 721-729
34. Yoon S.H., Moon J.H., and Kim M.S. A Deflection System to Reduce the Interference from Post-Source Decay Product Ions in Photodissociation Tandem Time-of-Flight Mass Spectrometry. Rapid Commun. Mass Spectrom. 20 (2006) 2201-2208
35. Dahl D.A. SIMION 3D version 7.0 (2000), Idaho National Engineering and Environmental Laboratory, Idaho Falls, ID
36. Wysocki V.H., Tsaprailis G., Smith L.L., and Breci L.A. Mobile and Localized Protons: A Framework for Understanding Peptide Dissociation. J. Mass Spectrom. 35 (2000) 1399-1406
37. Robinson P.J., and Holbrook K.A. Unimolecular Reactions (1972), Wiley-Interscience, New York 64-108
38. Moon J.H., Sun M., and Kim M.S. Efficient and Reliable Calculation of Rice-Ramsperger-Kassel-Marcus Unimolecular Reaction Rate Constants for Biopolymers: Modification of Beyer-Swinehart Algorithm for Degenerate Vibrations. J. Am. Soc. Mass Spectrom. 18 (2007) 1063-1069
39. Kim M.S. Fragmentation Probability in Collisional-Activation Mass Spectrometry (CA/MS). I. Effects of Sequential Collisional Excitation. Int. J. Mass Spectrom. Ion Phys. 50 (1983) 189-203