Scanning the genome of Mycobacterium tuberculosis to identify potential lectins

Protein and Peptide Letters

Volumn 14, Issue 7, 2007, Pages 683-691

  Desh, Deepak Singh ^a,b   Chandran, Divya ^a   Jeyakani, Justin ^a   Chandra, Nagasuma ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

^b Indian Institute of Advanced Research   (India)

Author keywords

Adhesion; Bacterial lectins; Haemagglutinin; Sequence analysis; Tuberculosis

Indexed keywords

LECTIN;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; CHEMISTRY; GENETICS; MOLECULAR GENETICS; MYCOBACTERIUM TUBERCULOSIS; PROTEIN SECONDARY STRUCTURE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; GENOME, BACTERIAL; LECTINS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM TUBERCULOSIS; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS); MYCOBACTERIUM TUBERCULOSIS;

EID: 34548685614     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/092986607781483813     Document Type: Article

References (48)

1. rd, C. E., Tekaia, F., Badcock, K., Basham, D., Brown, D., Chillingworth, T., Connor, R., Davies, R., Devlin, K., Feltwell, T., Gentles, S., Hamlin, N., Holroyd, S., Hornsby, T., Jagels, K., Krogh, A., McLean, J., Moule, S., Murphy, L., Oliver, K., Osborne, J., Quail, M.A., Rajandream, M.A., Rogers, J., Rutter, S., Seeger, K., Skelton, J., Squares, R., Squares, S., Sulston, J.E., Taylor, K., Whitehead, S. and Barrell, B.G. (1998) Nature, 393, 537-544.
2. Cole, S.T. (1999) FEBS Lett., 452, 7-10.
3. Domenech, P., Barry, C.E. and Cole, S.T. (2001) Curr. Opin. Microbiol., 4, 28-34.
4. Terwilliger, T.C., Park, M.S., Waldo, G.S., Berendzen, J., Hung, L.W., Kim, C.Y., Smith, C.V., Sacchettini, J.C., Bellinzoni, M., Bossi, R., Rossi, E.De., Mattevi, A., Milano, A., Riccardi, G., Rizzi, M., Roberts, M.M., Coker, A.R., Fossati, G., Mascagni, P., Coates, A.R., Wood, S.P., Goulding, C.W., Apostol, M.I, Anderson, D.H., Gill, H.S., Eisenberg, D.S., Taneja, B., Mande, S., Pohl, E., Lamzin, V., Tucker, P., Wilmanns, M., Colovos, C., Meyer-Klaucke, W., Munro, A.W., McLean, K.J., Marshall, K.R., Leys, D., Yang, J.K., Yoon, H.J., Lee, B.I., Lee, M.G., Kwak, J.E., Han, B.W., Lee, J.Y., Baek, S.H., Suh, S.W., Komen, M.M., Arcus, V.L., Baker, E.N., Lott, J.S., Jacobs, W. Jr., Alber, T. and Rupp, B. (2003) Tuberculosis (Edinb.), 83, 223-49.
5. Haataja, S.K., Tikkanen, U., Nilsson, Magnusson, U., Karlsson, K.A. and Finne, J. (1994) J. Biol. Chem., 269, 27466-27472.
6. Sharon, N. and Lis, H. (1989) Science, 246, 227-246.
7. Lis, H. and Sharon, N. (1998) Chem. Rev., 98, 637-674.
8. Drickamer, K. (1988) J. Biol. Chem., 263, 9557-9560.
9. Vijayan, M. and Chandra, N. (1999) Curr. Opin. Struct. Biol., 9, 707-714.
10. Sharon N. (2006) Biochim. Biophys. Acta., 1760, 527-537.
11. van Liempt, E., Bank, C.M., Mehta, P., Garci A-Vallejo, J.J., Kawar, Z.S., Geyer, R., Alvarez, R.A., Cummings, R.D., Kooyk, Y.V. and van Die, I. (2006) FEBS Lett., 580, 6123-6131.
12. Arnold, J.N., Dwek, R.A., Rudd, P.M and Sim, R.B. (2006) Immunol. Lett., 106, 103-10.
13. Boyden, S. V. (1950) Nature, 165, 765.
14. Kundu, M., Basu, J. and Chakrabarti, P. (1989) FEBS Lett., 256, 207-210.
15. Goswami, S., Sarkar, S. Basu, J., Kundu, M. and Chakrabarti, P. (1994) FEBS Lett., 355, 183-186.
16. Menozzi, F.D., Bischoff, R., Fort, E., Brennan, M.J. and Lochi, C. (1998) Proc. Natl. Acad. Sci. USA, 95, 12625-12630.
17. Chandra, N.R., Kumar, N., Jeyakani, J., Singh, D.D., Gowda, S.B. and Prathima, M.N. (2006) Glycobiology, 16, 938-46.
18. Peumans, W.J., Van Damme, E.J., Barre, A. and Rouge, P. (2001) Adv. Exp. Med. Biol., 491, 27-54.
19. Sassetti, C.M., Boyd, D.H. and Rubin, E. J. (2003) Mol. Microbiol., 48, 77-84.
20. Sato, Y., Cowell, J.L., Sato, H., Burstyn, D.G. and Manclark, C.R. (1983) Infect. Immun., 41, 313-320.
21. Knight, J.B., Huang, Y.Y, Halperin, S.A., Anderson, R., Morris, A., Macmillan, A., Jones, T., Burt, D.S., Van Nest G. and Lee, S.F. (2006) Clin. Exp. Immunol. 144, 543-51.
22. Strong, M., Sawaya, M.R., Wang, S., Phillips, M., Cascio, D. and Eisenberg, D.(2006) Proc. Natl. Acad. Sci. USA, 103, 8060-8065.
23. Hauser, K. and Tanner, W. (1989) FEBS Lett., 225, 290-294.
24. Lipke, P.N. and Wojciechowicz, D. and Kurjan, J. (1989) Mol. Cell. Biol., 9, 3155-3165.
25. Gaur, N.K. and Klotz, S.A. (1997) Infect. Immun., 65, 5289-5294.
26. Sheppard, D.C., Yeaman, M.R., Welch, W.H., Phan,Q.T., Fu, Y., Ibrahim, A.S., Filler, S.G., Zhang, M., Waring, A.J. and Edwards, J.E. Jr. (2004) J. Biol. Chem., 279, 30480-30489.
27. Hase, C.C., Bauer, M.E. and Finkelstein, R. A. (1994) Gene, 150, 17-25.
28. Chiavelli, D.A., Marsh, J.W. and Taylor, R.K. (2001) Appl. Environ. Microbiol., 67, 3220-3225.
29. Pethe, K., Alonso, S., Biet, F., Delogu, G., Brennan, M.J., Locht, C. and Menozzi, F.D. (2001) Nature, 412, 190-194.
30. Reddy, V.M. and Hayworth, D. A. (2002) Tuberculosis, 82, 31-36.
31. Menozzi, F.D., Reddy, V.M., Cayet, D., Raze, D., Debrie, A.S., Dehouck, M.P., Cecchelli, R. and Locht, C. (2006) Microbes Infect., 8, 1-9.
32. Pethe, K., Aumercier, M., Fort, E., Gatot, C., Locht, C. and Menozzi, F. D., (2000) J. Biol. Chem., 275, 14273-14280.
33. Mueller-Ortiz, S.L., Wanger, A.R. and Norris, S.J. (2001) Infect. Immun., 69, 7501-7511.
34. Tahirov, T.H., Lu, T.H., Liaw, Y.C., Chen, Y.L. and Lin, J.Y. (1995) J. Mol. Biol., 250, 354-367.
35. Weis, W.I. and Drickamer, K. (1994) Structure 2, 1227-1240.
36. Ofek, I. and Sharon, N. (1988) Infect. Immun., 56, 539-547.
37. Karlsson, K.A. (1989) Annu. Rev. Biochem., 58, 309-350.
38. Bermudez, L.E. and Goodman, J. (1996) Infect. Immun., 64, 1400-1406.
39. Lin, Y., Zhang, M. and Barnes, P. S. (1998) Infect. Immun., 66, 1121-1126.
40. Wickremasinghe, M.I., Thomas, L.H. and Friedland, J.S. (1999) J. Immunol., 163, 3936-3947.
41. McDonough, K. A. and Kress, Y., (1995) Infect. Immun., 63, 4802-4811.
42. Altschul, S.F., Gish, W., Miller, W., Meyers, E.W. and Lipman, D.J. (1990) J. Mol. Biol., 215, 403-410.
43. Bateman, A., Coin, L., Durbin, R., Finn, R.D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E.L.L., Studholme, D.J., Yeats, C. and Eddy, S.R. (2004) Nucleic Acids Res., 32, D138-141.
44. Nicola, J., Mulder., Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Binns, D., Bork, P., Buillard, V., Cerutti, L., Copley, R., Courcelle, E., Das, U., Daugherty, L., Dibley, M., Finn, R., Fleischmann, W., Gough, J., Haft, D., Hulo, N., Hunter, S., Kahn, D., Kanapin, A., Kejariwal, A., Labarga, A., Petra, S., Langendijk-Genevaux, Lonsdale, D., Lopez, R., Letunic, I., Madera, M., Maslen, J., McAnulla, C., McDowall, J., Mistry, J., Mitchell, A., Nikolskaya, A.N., Orchard, S., Orengo, C., Petryszak, R., Selengut, J.D., Sigrist, C.J.A., Thomas, P.D., Valentin, F., Wilson, D., Wu, C.H. and Yeats, C. (2007) Nucleic Acids Res., 35, D224-228.
45. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. (1997) Nucleic Acids Res., 25, 3389-3402.
46. Smith and Waterman (1981) J. Mol. Biol., 147, 195-197.
47. Marchler-Bauer, A. and Bryant, S. H. (2004) Nucleic Acids Res., 32, W327-331.
48. Jonassen I. (1997) Comput. Appl. Biosci., 13, 509-522.