C-terminal processing of yeast Spt7 occurs in the absence of functional SAGA complex

BMC Biochemistry

Volumn 8, Issue , 2007, Pages

  Hoke, Stephen M T ^a   Liang, Gaoyang ^a,b   Mutiu, A Irina ^a   Genereaux, Julie ^a   Brandl, Christopher J ^a  

^a WESTERN UNIVERSITY   (Canada)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GALACTOSE; HISTONE; SPT7 PROTEIN; TRANSCRIPTION FACTOR SAGA; UNCLASSIFIED DRUG; AMINO ACID; EPITOPE; RECOMBINANT PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SAGA COMPLEX, S CEREVISIAE; SPT7 PROTEIN, S CEREVISIAE; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN EXPRESSION; YEAST; CHEMISTRY; GENE DELETION; GENETICS; IMMUNOLOGY; METABOLISM; MOLECULAR WEIGHT; PROTEIN BINDING; PROTEIN PROCESSING; SACCHAROMYCES CEREVISIAE;

AMINO ACIDS; EPITOPES; GENE DELETION; MOLECULAR WEIGHT; PROTEIN BINDING; PROTEIN PROCESSING, POST-TRANSLATIONAL; RECOMBINANT PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

EID: 34548626852     PISSN: None     EISSN: 14712091     Source Type: Journal    
DOI: 10.1186/1471-2091-8-16     Document Type: Article

References (48)

1. Acetylation of histones and transcription-related factors. DE Sterner SL Berger, Microbiol Mol Biol Rev 2000 64 435 459 10839822 10.1128/MMBR.64.2.435- 459.2000
2. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex. PA Grant L Duggan J Côté SM Roberts JE Brownell R Candau R Ohba T Owen-Hughes CD Allis F Winston SL Berger JL Workman, Genes Dev 1997 11 1640 1650 10.1101/gad.11.13.1640 9224714
3. Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters. R Belotserkovskaya DE Sterner M Deng MH Sayre PM Lieberman SL Berger, Mol Cell Biol 2000 20 634 647 10611242 10.1128/MCB.20.2.634-647.2000
4. SALSA, a variant of yeast SAGA, contains truncated Spt7, which correlates with activated transcription. DE Sterner R Belotesrkovskaya SL Berger, Proc Natl Acad Sci USA 2002 99 18 11622 11627 12186975 10.1073/pnas.182021199
5. The novel SLIK histone acetylatransferase complex functions in the yeast retrograde response pathway. MG Pray-Grant D Schieltz SJ McMahon JM Wood EL Kennedy RG Cook JL Workman JR Yates 3rd PA Grant, Mol Cell Biol 2002 22 8774 8786 12446794 10.1128/MCB.22.24.8774-8786.2002
6. Analysis of Spt7 function in the Saccharomyces cerevisiae SAGA coactivator complex. PY Wu F Winston, Mol Cell Biol 2002 22 5367 5379 12101232 10.1128/MCB.22.15.5367-5379.2002
7. Genetic isolation of ADA2: a potential transcriptional adaptor required for function of certain acidic activation domains. SL Berger B Pina N Silverman GA Marcus J Agapite JL Regier SJ Triezenberg L Guarente, Cell 1992 70 251 265 10.1016/0092-8674(92)90100-Q 1638630
8. Two distinct yeast transcriptional activators require the function of the GCN5 protein to promote normal levels of transcription. T Georgakopoulos G Thireos, EMBO J 1992 11 4145 4152 1396595
9. Characterization of NGG1, a novel yeast gene required for glucose repression of GAL4p-regulated transcription. CJ Brandl AM Furlanetto JA Martens KS Hamilton, EMBO J 1993 12 5255 5265 8262068
10. ADA3: a gene, identified by resistance to GAL4-VP16, with properties similar to and different from those of ADA2. B Pina S Berger GA Marcus N Silverman J Agapite L Guarente, Mol Cell Biol 1993 13 5981 5989 8413201
11. Functional similarity of physical association between GCN5 and ADA2: putative transcriptional adaptors. GA Marcus N Silverman SL Berger J Horiuchi L Guarente, EMBO J 1994 13 4807 4815 7957049
12. Tetrahymena histone acetyltransferase A: a transcriptional co-activator linking gene expression to histone acetylation. JE Brownell J Zhou T Ranalli R Kobayashi DG Edmondson SY Roth CD Allis, Cell 1996 84 843 851 10.1016/S0092-8674(00)81063-6 8601308
13. Histone acetyltransferase activity of yeast Gcn5p is required for the activation of target genes in vivo. MH Kuo J Zhou P Jambeck ME Churchill CD Allis, Genes Dev 1998 12 627 639 9499399
14. Transcriptional activators direct histone acetyltransferase complexes to nucleosomes. RT Utley K Ikeda PA Grant J Côté DJ Steger A Eberharter S John JL Workman, Nature 1998 394 498 502 10.1038/28886 9697775
15. Critical residues for histone acetylation by GCN5, functioning in Ada and SAGA complexes, are also required for transcriptional function in vivo. L Wang L Liu SL Berger, Genes Dev 1998 12 5 640 653 9499400
16. Components of the SAGA histone acetylatransferase complex are required for repressed transcription of ARG1 in rich medium. AR Ricci J Genereaux CJ Brandl, Mol Cell Biol 2002 22 4033 4042 12024017 10.1128/MCB.22.12.4033-4042. 2002
17. Increasing the rate of chromatin remodeling and gene activation - a novel role for the histone. S Barbaric J Walker A Schmid JQ Svejstrup W Horz, EMBO J 2001 20 4944 4951 11532958 10.1093/emboj/20.17.4944
18. A subset of TAFIIs are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation. PA Grant D Schieltz MG Pray-Grant DJ Steger JC Reese JR Yates 3rd JL Workman, Cell 1998 94 45 53 10.1016/S0092-8674(00)81220-9 9674426
19. Molecular architecture of the S. cerevisiae SAGA complex. PY Wu C Ruhlmann F Winston P Schultz, Mol Cell 2004 15 199 208 10.1016/j.molcel.2004.06. 005 15260971
20. ADA1, a novel component of the ADA/GCN5 complex has broader effects than GCN5, ADA2, or ADA3. J Horiuchi N Silverman B Pina GA Marcus L Guarente, Mol Cell Biol 1997 17 3220 3228 9154821
21. Essential functional interactions of SAGA, a Saccharomyces cerevisiae complex of Spt, Ada, and Gcn5 proteins, with the Snf/Swi and Srb/mediator complexes. SM Roberts F Winston, Genetics 1997 147 451 465 9335585
22. Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-Binding protein interaction. DE Sterner PA Grant SM Roberts LJ Duggan R Belotesrkovskaya LA Pacella F Winston JL Workman SL Berger, Mol Cell Biol 1999 19 86 98 9858534
23. SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae. DM Eisenmann KM Arndt SL Ricupero JW Rodney F Winston, Genes Dev 1992 6 1319 1331 10.1101/gad.6.7.1319 1628834
24. The Saccharomyces cerevisiae SPT8 gene encodes a very acidic protein that is functionally related to SPT3 and TATA-binding protein. DM Eisenmann C Chapon SM Roberts C Dollard F Winston, Genetics 1994 137 647 657 8088510
25. The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo. AM Dudley C Rougeulle F Winston, Genes Dev 1999 13 2940 2945 10580001 10.1101/gad.13.22.2940
26. The ATM-related cofactor Tra1 is a component of the purified SAGA complex. PA Grant D Schieltz MG Pray-Grant JR Yates 3rd JL Workman, Mol Cell 1998 2 863 867 10.1016/S1097-2765(00)80300-7 9885573
27. Tra1 is a component of the yeast Ada-Spt transcriptional regulatory complexes. A Saleh D Schieltz N Ting SB McMahon DW Litchfield JR Yates 3rd SP Lees-Miller MD Cole CJ Brandl, J Biol Chem 1998 273 26559 26565 10.1074/jbc.273.41.26559 9756893
28. Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit. CE Brown L Howe K Sousa SC Alley MJ Carrozza S Tan JL Workman, Science 2001 292 2333 2337 10.1126/science.1060214 11423663
29. Adenovirus E1A requires the yeast SAGA histone acetyltransferase complex and associates with SAGA components Gcn5 and Tra1. CA Kulesza HA van Buskirk MD Cole JC Reese MM Smith DA Engel, Oncogene 2002 21 1411 1422 10.1038/sj.onc. 1205201 11857084
30. In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer. SR Bhaumik T Raha DP Aiello MR Green, Genes Dev 2004 18 333 343 14871930 10.1101/gad.1148404
31. Function of a eukaryotic transcription activator during the transcription cycle. J Fishburn N Mohibullah S Hahn, Mol Cell 2005 18 369 378 10.1016/j.molcel.2005.03.029 15866178
32. Targets of the Gal4 Transcription Activator in Functional Transcription Complexes. WM Reeves S Hahn, Mol Cell Biol 2005 25 9092 9102 16199885 10.1128/MCB.25.20.9092-9102.2005
33. Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. SL Sanders J Jennings A Canutescu AJ Link PA Weil, Mol Cell Biol 2002 22 4723 4738 12052880 10.1128/MCB.22.13.4723-4738.2002
34. Cluster analysis of mass spectrometry data reveals a novel component of SAGA. DA Powell CM Weaver JL Jennings KJ McAfee Y He PA Weil AJ Link, Mol Cell Biol 2004 24 7249 7259 15282323 10.1128/MCB.24.16.7249-7259.2004
35. Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery. S Rodirguez-Navarro T Fischer MJ Luo O Antunez S Brettschneider J Lechner JE Perez-Ortin R Reed E Hurt, Cell 2004 116 75 86 10.1016/S0092-8674(03)01025-0 14718168
36. Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation. MG Pray-Grant JA Daniel D Schieltz JR Yates 3rd PA Grant, Nature 2005 433 434 438 10.1038/nature03242 15647753
37. A transcriptional switch in the expression of yeast tricarboxylic acid cycle genes in response to a reduction or loss of respiratory function. Z Liu RA Butow, Mol Cell Biol 1999 19 6720 6728 10490611
38. A basic helix-loop-helix-leucine zipper transcription complex in yeast functions in a signaling pathway from mitochondria to the nucleus. Y Jia B Rothermel J Thornton RA Butow, Mol Cell Biol 1997 17 1110 1117 9032238
39. Mitochondria-to-nuclear signaling is regulated by the subcellular localization of the transcription factors Rtg1p and Rtg3p. T Sekito J Thornton RA Butow, Mol Biol Cell 2000 11 2103 2115 10848632
40. H2B Ubiquitin Protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex. K Ingvarsdottir NJ Krogan NC Emre A Wyce NJ Thompson A Emili TR Hughes JF Greenblatt SL Berger, Mol Cell Biol 2005 25 1162 1172 15657441 10.1128/MCB.25.3.1162-1172.2005
41. The deubiquitylation activity of Ubp8 is dependent upon Sgf11 and its association with the SAGA complex. KK Lee L Florens SK Swanson MP Washburn JL Workman, Mol Cell Biol 2005 25 1173 1182 15657442 10.1128/MCB.25.3.1173-1182. 2005
42. Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo. A Shukla N Stanojevic Z Duan PT Sen SR Bhaumik, Mol Cell Biol 2006 26 3339 3352 16611979 10.1128/MCB.26.9.3339-3352.2006
43. Histone folds mediate selective heterodimerization of yeast TAF(II)25 with TFIID components yTAF(II)47 and yTAF(II)65 and with SAGA component ySPT7. YG Gangloff SL Sanders C Romier D Kirschner PA Weil L Tora I Davidson, Mol Cell Biol 2001 21 1841 1853 11238921 10.1128/MCB.21.5.1841-1853.2001
44. Tom1p, a yeast hect-domain protein which mediates transcriptional regulation through the yeast ADA/SAGA coactivator complexes. A Saleh M Collart JA Martens J Genereaux S Allard J Côté CJ Brandl, J Mol Biol 1998 282 933 946 10.1006/jmbi.1998.2036 9753545
45. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. EA Winzeler DD Shoemaker A Astromoff H Liang K Anderson B Andre R Bangham R Benito JD Boeke H Bussey AM Chu C Connelly K Davis F Dietrich SW Dow M El Bakkoury F Foury SH Friend E Gentalen G Giaever JH Hegemann T Jones M Laub H Liao RW Davis, Science 1999 285 901 906 10.1126/science.285.5429.901 10436161
46. New yeast E. coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. RD Gietz A Sugino, Gene 1988 74 2 527 534 10.1016/0378-1119(88)90185-0 3073106
47. A generic protein purification method for protein complex characterization and proteome exploration. G Rigaut A Shevchenko B Rutz M Wilm M Mann B Séraphin, Nat Biotechnol 1999 17 1030 1032 10.1038/13732 10504710
48. Identification of native complexes containing the yeast coactivator/repressor proteins NGG1/ADA3 and ADA2. A Saleh V Lang R Cook CJ Brandl, J Biol Chem 1997 272 5571 5578 10.1074/jbc.272.9.5571 9038164