MIOR: An individual-based model for simulating the spatial patterns of soil organic matter microbial decomposition

European Journal of Soil Science

Volumn 58, Issue 5, 2007, Pages 1127-1135

  Masse, D ^a,e   Cambier, C ^b   Brauman, A ^c   Sall, S ^c   Assigbetse, K ^c   Chotte, J L ^d  

^a Institut de recherche pour le developpement Ouagadougou   (Burkina Faso)

^b UNIVERSITÉ PIERRE ET MARIE CURIE   (France)

^c INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (Senegal)

^d INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^e Institut de Recherche pour le Developpement Antananarivo   (Madagascar)

Author keywords

[No Author keywords available]

Indexed keywords

DECOMPOSITION; INDIVIDUAL-BASED MODEL; MICROBIAL ACTIVITY; NITROGEN CYCLE; SOIL CARBON; SOIL ORGANIC MATTER; SPATIAL DISTRIBUTION;

EID: 34548590405     PISSN: 13510754     EISSN: 13652389     Source Type: Journal    
DOI: 10.1111/j.1365-2389.2007.00900.x     Document Type: Article

References (32)

1. Ågren, G.I. Bosatta, E. 1996. Quality: a bridge between theory and experiment in soil organic matter studies. OIKOS, 76, 522 528.
2. Angers, D.A. Recous, S. 1997. Decomposition of wheat straw and rye residues as affected by particle size. Plant and Soil, 189, 197 203.
3. Bending, G.D. Turner, M.K. 1999. Interaction of biochemical quality and particle size of crop residues and its effect on the microbial biomass and nitrogen dynamics following incorporation into soil. Biology and Fertility of Soils, 29, 319 327.
4. Blagodatsky, S.A. Richter, O. 1998. Microbial growth in soil and nitrogen turnover: a theoretical model considering the activity state of microorganisms. Soil Biology and Biochemistry, 30, 1743 1755.
5. Bousquet, F. Le Page, C. 2004. Multi-agent simulations and ecosystem management: a review. Ecological Modelling, 176, 313 332.
6. Chenu, C. Stotzky, G. 2002. Interactions between microorganisms and soil particles: an overview. In : Interactions Between Soil Particles and Microorganisms (eds P.M. Huang, J.-M. Bollag N. Senesi pp. 3 40. Wiley, New York.
7. Chotte, J.L., Ladd, J.N. Amato, M. 1997. Sites of microbial assimilation, and turnover of soluble and particulate 14C-labelled substrates decomposing in a clay soil. Soil Biology and Biochemistry, 30, 205 218.
8. Christensen, B.T. 1996. Matching measurable soil organic matter fractions with coneptual pools in simulation models of carbon turnover: revision of model structure. In : Evaluation of Soil Organic Matter Models (eds D.S. Powlson, P. Smith J.U. Smith pp. 143 160. Springer Verlag, Berlin.
9. Ettema, C.H. Wardle, D.A. 2002. Spatial soil ecology. Trends in Ecology and Evolution, 17, 177 183.
10. Feller, C. Beare, M.H. 1997. Physical control of soil organic matter dynamics in the tropics. Geoderma, 79, 69 116.
11. Gaillard, V., Chenu, C. Recous, S. 2003. Carbon mineralisation in soil adjacent to plant residues of contrasting biochemical quality. Soil Biology and Biochemistry, 35, 93 99.
12. Garnier, P., Néel, C., Aitac, C., Recous, S., Lafolie, F. Mary, B. 2003. Modelling carbon and nitrogen dynamics in a bare soil with and without straw incorporation. European Journal of Soil Science, 54, 555 568.
13. Gignoux, J., House, J., Hall, D., Masse, D., Nacro, H.B. Abbadie, L. 2001. Design and test of a generic cohort model of soil organic matter decomposition: the SOMKO model. Global Ecology and Biogeography, 10, 639 660.
14. Ginot, V., Le Page, C. Souissi, S. 2002. A multi-agents architecture to enhance end-user individual-based modelling. Ecological Modelling, 157, 23 41.
15. - oxidizing bacteria and serotypes at the millimeter scale along a soil transect. FEMS Microbiology Ecology, 34, 57 62.
16. Grundmann, G.L., Dechesne, A., Bartoli, F., Flandrois, J.P., Chasse, J.L. Kizungu, R. 2001. Spatial modeling of nitrifier microhabitats in soil. Soil Science Society of America Journal, 65, 1709 1716.
17. Kreft, J.-U., Booth, G. Wimpenny, J.W.T. 1998. BacSim, a simulator for individual-based modelling of bacterial colony growth. Microbiology-UK, 144, 3275 3287.
18. McGill, W.B. 1996. Review and classification of ten soil organic matter (SOM) models. In : Evaluation of Soil Organic Matter Models (eds D.S. Powlson, P. Smith J.U. Smith pp. 111 132. Springer-Verlag, Berlin.
19. Minderman, G. 1968. Addition, decomposition and accumulation of organic matter in forests. Journal of Ecology, 56, 355 362.
20. Nunan, N., Ritz, K., Crabb, D., Harris, K., Wu, K., Crawford, J.W. Young, I.M. 2001. Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil. FEMS Microbiology Ecology, 37, 67 77.
21. Nunan, N., Wu, K., Young, I.M., Crawford, J.W. Ritz, K. 2002. In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil. Microbial Ecology, 44, 296 305.
22. Paul, E.A. Clark, F.E. 1996. Soil Microbiology and Biochemistry. Academic Press, San Diego.
23. Peck, S.L. 2004. Simulation as experiment: a philosophical reassessment for biological modeling. Trends in Ecology and Evolution, 19, 530 534.
24. Ranjard, L., Brothier, E. Nazaret, S. 2000. Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking. Applied and Environmental Microbiology, 66, 5334 5339.
25. Six, J., Bossuyt, H., Degryze, S. Denef, K. 2004. A history of research on the link between (micro) aggregates, soil biota, and soil organic matter dynamics. Soil and Tillage Research, 79, 7 31.
26. Six, J., Elliott, E.T. Paustian, K. 2000. Soil macroaggregate turnover and microaggregate formation: a mechanism for C sequestration under no-tillage agriculture. Soil Biology and Biochemistry, 32, 2099 2103.
27. Tisdall, J.M. Oades, J.M. 1982. Organic matter and water-stable aggregates in soils. Journal of Soil Science, 33, 141 163.
28. Trinsoutrot, I., Recous, S., Bentz, B., Lineres, M., Cheneby, D. Nicolardot, B. 2000. Biochemical quality of crop residues and carbon and nitrogen mineralization kinetics under nonlimiting nitrogen conditions. Soil Science Society of America Journal, 64, 918 926.
29. Vargas, R. Hattori, T. 1986. Protozoan predation of bacterial cells in soil aggregates. FEMS Microbial Ecology, 38, 233 242.
30. Vieublé-Gonod, L., Chenu, C. Soulas, G. 2003. Spatial variability of 2,4-dichlorophenoxyacetic acid (2,4-D) mineralisation potential at a millimetre scale in soil. Soil Biology and Biochemistry, 35, 373 382.
31. Wachinger, G., Fiedler, S., Zepp, K., Gattinger, A., Sommer, M. Roth, K. 2000. Variability of soil methane production on the micro-scale: spatial association with hot spots of organic material and Archaeal populations. Soil Biology and Biochemistry, 32, 1121 1130.
32. Young, I.M. Crawford, J.W. 2004. Interactions and self-organization in the soil-microbe complex. Science, 304, 1634 1637.