Developmental steps in acquiring competence for shoot development in Arabidopsis tissue culture

Planta

Volumn 226, Issue 5, 2007, Pages 1183-1194

  Che, Ping ^a   Lall, Sonia ^a   Howell, Stephen H ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Competence acquisition; Dedifferentiation; Pericycle; Response regulator; Shoot regeneration

Indexed keywords

PRIMER DNA;

ARABIDOPSIS; ARTICLE; CELL CYCLE; DRUG EFFECT; GENE EXPRESSION PROFILING; GENETICS; GROWTH, DEVELOPMENT AND AGING; NUCLEOTIDE SEQUENCE; PLANT;

ARABIDOPSIS; BASE SEQUENCE; CELL CYCLE; DNA PRIMERS; GENE EXPRESSION PROFILING; PLANT SHOOTS;

ARABIDOPSIS;

EID: 34548540725     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-007-0565-4     Document Type: Article

References (47)

1. Aloni R, Aloni E, Langhans M, Ullrich CI (2006) Role of cytokinin and auxin in shaping root architecture: regulating vascular differentiation, lateral root initiation, root apical dominance and root gravitropism. Ann Bot (Lond) 97:883-893
2. Atta R, Guivarc H, Laurens L, Traas J, Giraudat-Pautot V, Chriqui D (2004) Totipotency of pericycle cells in Arabidopsis thaliana root and hypocotyl explants for both root and shoot regeneration. In: 15th international conference on Arabidopsis research. Berlin
3. Banno H, Ikeda Y, Niu QW, Chua NH (2001) Overexpression of Arabidopsis ESR1 induces initiation of shoot regeneration. Plant Cell 13:2609-2618
4. Baurle I, Laux T (2005) Regulation of WUSCHEL transcription in the stem cell niche of the Arabidopsis shoot meristem. Plant Cell 17:2271-2280
5. Beeckman T, Burssens S, Inze D (2001) The peri-cell-cycle in Arabidopsis. J Exp Bot 52:403-411
6. Bhalerao RP, Eklof J, Ljung K, Marchant A, Bennett M, Sandberg G (2002) Shoot-derived auxin is essential for early lateral root emergence in Arabidopsis seedlings. Plant J 29:325-332
7. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72:248-254
8. Brenner WG, Romanov GA, Kollmer I, Burkle L, Schmulling T (2005) Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades. Plant J 44:314-333
9. Breuil-Broyer S, Morel P, de Almeida-Engler J, Coustham V, Negrutiu I, Trehin C (2004) High-resolution boundary analysis during Arabidopsis thaliana flower development. Plant J 38:182-192
10. Casimiro I, Beeckman T, Graham N, Bhalerao R, Zhang H, Casero P, Sandberg G, Bennett MJ (2003) Dissecting Arabidopsis lateral root development. Trends Plant Sci 8:165-171
11. Casimiro I, Marchant A, Bhalerao RP, Beeckman T, Dhooge S, Swarup R, Graham N, Inze D, Sandberg G, Casero PJ, Bennett M (2001) Auxin transport promotes Arabidopsis lateral root initiation. Plant Cell 13:843-852
12. Celenza JL Jr, Grisafi PL, Fink GR (1995) A pathway for lateral root formation in Arabidopsis thaliana. Genes Dev 9:2131-2142
13. Che P, Gingerich DJ, Lall S, Howell SH (2002) Global and cytokinin-related gene expression changes during shoot development in Arabidopsis. Plant Cell 14:2771-2785
14. Che P, Lall S, Nettleton D, Howell SH (2006) Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol 141:620-637
15. Christianson ML, Warnick DA (1983) Competence and determination in the process of in vitro shoot organogenesis. Dev Biol 95:288-293
16. Czako M, Jang JC, Herr JM Jr, Marton L (1992) Differential manifestation of seed mortality induced by seed-specific expression of the gene for diphtheria toxin A chain in Arabidopsis and tobacco. Mol Gen Genet 235:33-40
17. Daimon Y, Takabe K, Tasaka M (2003) The CUP-SHAPED COTYLEDON genes promote adventitious shoot formation on calli. Plant Cell Physiol 44:113-21
18. Gallois J, Woodward C, Reddy G, Sablowski R (2002) Combined SHOOT MERISTEMLESS and WUSCHEL trigger ectopic organogenesis in Arabidopsis. Development 129:3207-3217
19. Gautheret RJ (1966) Factors Affecting differentiation of plant tissue grown in vitro. In: Beerman W, Nieuwkoop PD, Wolff E (eds) Cell differentiation and morphogenesis. North-Holland, Amsterdam, pp 55-95
20. Hicks GS (1980) Patterns of organ development in plant tissue culture and the problem of organ determination. Bot Rev 46:1-23
21. Hicks GS (1994) Shoot induction and organogenesis in vitro: a developmental perspective. In Vitro Cell Dev Biol 30P:10-15
22. Himanen K, Boucheron E, Vanneste S, de Almeida Engler J, Inze D, Beeckman T (2002) Auxin-mediated cell cycle activation during early lateral root initiation. Plant Cell 14:2339-2351
23. Hwang I, Sheen J (2001) Two-component circuitry in Arabidopsis cytokinin signal transduction. Nature 413:383-389
24. Jefferson RA (1987) Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 5:387-405
25. Kiba T, Yamada H, Mizuno T (2002) Characterization of the ARR15 and ARR16 response regulators with special reference to the cytokinin signaling pathway mediated by the AHK4 histidine kinase in roots of Arabidopsis thaliana. Plant Cell Physiol 43:1059-1066
26. Kiba T, Yamada H, Sato S, Kato T, Tabata S, Yamashino T, Mizuno T (2003) The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin-mediated signal transduction in Arabidopsis thaliana. Plant Cell Physiol 44:868-874
27. Kuroha T, Satoh S (2007) Involvement of cytokinins in adventitious and lateral root formation. Plant Root 1:27-33
28. Kurup S, Runions J, Kohler U, Laplaze L, Hodge S, Haseloff J (2005) Marking cell lineages in living tissues. Plant J 42:444-453
29. Laplaze L, Parizot B, Baker A, Ricaud L, Martiniere A, Auguy F, Franche C, Nussaume L, Bogusz D, Haseloff J (2005) GAL4-GFP enhancer trap lines for genetic manipulation of lateral root development in Arabidopsis thaliana. J Exp Bot 56:2433-2442
30. Laskowski MJ, Williams ME, Nusbaum HC, Sussex IM (1995) Formation of lateral root meristems is a two-stage process. Development 121:3303-3310
31. Laux T, Mayer KFX, Berger J, Jürgens G (1996) The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis. Development 122:87-96
32. Lee M, Phillips RL (1988) The chromosomal basis of somaclonal variation. Ann Rev Plant Physiol 39:413-437
33. Leibfried A, To JP, Busch W, Stehling S, Kehle A, Demar M, Kieber JJ, Lohmann JU (2005) WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature 438:1172-1175
34. Li X, Mo X, Shou H, Wu P (2006) Cytokinin-mediated cell cycling arrest of pericycle founder cells in lateral root initiation of Arabidopsis. Plant Cell Physiol 47:1112-1123
35. Malamy JE, Benfey PN (1997) Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 124:33-44
36. Mayer KF, Schoof H, Haecker A, Lenhard M, Jurgens G, Laux T (1998) Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell 95:805-815
37. Menges M, Hennig L, Gruissem W, Murray JA (2002) Cell cycle-regulated gene expression in Arabidopsis. J Biol Chem 277:41987-42002
38. Planchais S, Glab N, Inze D, Bergounioux C (2000) Chemical inhibitors: a tool for plant cell cycle studies. FEBS Lett 476:78-83
39. Sakai H, Honma T, Aoyama T, Sato S, Kato T, Tabata S, Oka A (2001) ARR1, a transcription factor for genes immediately responsive to cytokinins. Science 294:1519-1521
40. Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100:9440-9445
41. Thorpe TA (1993) In vitro organogenesis and somatic embryogenesis: physiological and biochemical aspects. In: Roubelakis-Angelakis KA, Tran Thanh Van K (eds) Morphogenesis in plants- molecular approaches. Plenum, NewYork, pp 19-38
42. To JP, Haberer G, Ferreira FJ, Deruere J, Mason MG, Schaller GE, Alonso JM, Ecker JR, Kieber JJ (2004) Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant Cell 16:658-671
43. Torrey JG (1950) The induction of lateral roots by indoleacetic acid and root decapitation. Am J Bot 37:257-264
44. Valvekens D, Van Montagu M, Lijsebettens M (1988) Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci USA 85:5536-5540
45. Weijers D, Van Hamburg JP, Van Rijn E, Hooykaas PJ, Offringa R (2003) Diphtheria toxin-mediated cell ablation reveals interregional communication during Arabidopsis seed development. Plant Physiol 133:1882-1892
46. Werner T, Motyka V, Laucou V, Smets R, Van Onckelen H, Schmulling T (2003) Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity. Plant Cell 15:2532-2350
47. Werner T, Motyka V, Strnad M, Schmulling T (2001) Regulation of plant growth by cytokinin. Proc Natl Acad Sci USA 98:10487-104