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Volumn 24, Issue 3, 2007, Pages 337-342

Peak alignment using restricted edit distances

Author keywords

Edit distance; Gel electrophoresis; Mass spectrometry; Peak alignment; Sparse dynamic programming

Indexed keywords

DYNAMIC PROGRAMMING; MASS SPECTROMETRY; PROBLEM SOLVING;

EID: 34548527349     PISSN: 13890344     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioeng.2007.02.007     Document Type: Article
Times cited : (3)

References (16)
  • 1
    • 0034743281 scopus 로고    scopus 로고
    • Automated detection of differentially expressed fragments in mRNA differential display
    • Aittokallio T., Ojala P., Nevalainen T.J., and Nevalainen O. Automated detection of differentially expressed fragments in mRNA differential display. Electrophoresis 22 10 (2001) 1935-1945
    • (2001) Electrophoresis , vol.22 , Issue.10 , pp. 1935-1945
    • Aittokallio, T.1    Ojala, P.2    Nevalainen, T.J.3    Nevalainen, O.4
  • 2
    • 0002451984 scopus 로고    scopus 로고
    • SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database
    • Bafna V., and Edwards N. SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database. Bioinformatics 17 (2001) S13-S21
    • (2001) Bioinformatics , vol.17
    • Bafna, V.1    Edwards, N.2
  • 3
    • 26444535706 scopus 로고    scopus 로고
    • Böcker, S., Kaltenbach, M., 2005. Mass spectra alignments and their significance. In: Proceedings of the 16th Annual Symposium on Combinatorial Pattern Matching (CPM 2005). Springer-Verlag, LNCS 3537, pp. 429-441.
  • 4
    • 34548523822 scopus 로고    scopus 로고
    • Böcker, S., Mäkinen, V., 2005. Maximum line-pair stabbing problem and its variations. In: Proceedings of the 21st European Workshop on Computational Geometry (EWCG'05). Eindhoven, Netherlands, March 9-11, pp. 183-186.
  • 5
    • 27744581507 scopus 로고    scopus 로고
    • Colinge, J., Maselot, A., Magnin, J., 2003. A systematic statistical analysis of ion trap tandem mass spectra in view of peptide scoring. In: Proceedings of the Workshop on Algorithms in Bioinformatics (WABI 2003). Springer-Verlag, LNCS 2812, pp. 25-38.
  • 8
    • 0026888975 scopus 로고
    • Sparse dynamic programming. I. Linear cost functions
    • Eppstein D., Galil Z., Giancarlo R., and Italiano G.F. Sparse dynamic programming. I. Linear cost functions. J. ACM 39 3 (1992) 519-545
    • (1992) J. ACM , vol.39 , Issue.3 , pp. 519-545
    • Eppstein, D.1    Galil, Z.2    Giancarlo, R.3    Italiano, G.F.4
  • 9
    • 85020601782 scopus 로고    scopus 로고
    • Gabow, H.N., Bentley, J.L., Tarjan, R.E., 1984. Scaling and related techniques for geometry problems. In: Proceedings of the 16th ACM Symposium on Theory of Computing (STOC'84), pp. 135-143.
  • 10
    • 0017492836 scopus 로고
    • A fast algorithm for computing longest common subsequences
    • Hunt J.W., and Szymanski T.G. A fast algorithm for computing longest common subsequences. Commun. ACM 20 5 (1977) 350-353
    • (1977) Commun. ACM , vol.20 , Issue.5 , pp. 350-353
    • Hunt, J.W.1    Szymanski, T.G.2
  • 11
    • 34548541122 scopus 로고    scopus 로고
    • Mäkinen, V., August 2003. Parameterized Approximate String Matching and Local-Similarity-Based Point-Pattern Matching. PhD Thesis, Report A-2003-6. Department of Computer Science, Univ. of Helsinki.
  • 12
    • 23144433003 scopus 로고    scopus 로고
    • Transposition Invariant String Matching
    • earlier in Proc. STACS
    • Mäkinen V., Navarro G., and Ukkonen E. Transposition Invariant String Matching. J. Algorithms 56 2 (2003) 124-153 earlier in Proc. STACS
    • (2003) J. Algorithms , vol.56 , Issue.2 , pp. 124-153
    • Mäkinen, V.1    Navarro, G.2    Ukkonen, E.3
  • 14
    • 0001116877 scopus 로고
    • Binary codes capable of correcting deletions, insertions and reversals
    • Levenshtein V. Binary codes capable of correcting deletions, insertions and reversals. Soviet Phys. Doklady 6 (1966) 707-710
    • (1966) Soviet Phys. Doklady , vol.6 , pp. 707-710
    • Levenshtein, V.1
  • 15
    • 0002484064 scopus 로고
    • Preserving order in a forest in less than logarithmic time and linear space
    • van Emde P., and Boas. Preserving order in a forest in less than logarithmic time and linear space. Inf. Process. Lett. 6 3 (1977) 80-82
    • (1977) Inf. Process. Lett. , vol.6 , Issue.3 , pp. 80-82
    • van Emde, P.1    Boas2
  • 16
    • 34250391491 scopus 로고
    • Design and implementation of an efficient priority queue
    • van Emde Boas P., Kaas R., and Zijlstra E. Design and implementation of an efficient priority queue. Math. Syst. Theory 10 (1977) 99-127
    • (1977) Math. Syst. Theory , vol.10 , pp. 99-127
    • van Emde Boas, P.1    Kaas, R.2    Zijlstra, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.