메뉴 건너뛰기




Volumn 24, Issue 3, 2007, Pages 351-359

Data mining of imperfect double-stranded RNA in 3′ untranslated regions of eukaryotic mRNAs

Author keywords

3 UTR; Double stranded RNA; RNA based regulation; Well ordered stem loop

Indexed keywords

CYTOTOXICITY; DATA MINING; DATABASE SYSTEMS; GENE EXPRESSION; STATISTICAL METHODS;

EID: 34548509686     PISSN: 13890344     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioeng.2007.02.006     Document Type: Article
Times cited : (4)

References (26)
  • 1
    • 0035800504 scopus 로고    scopus 로고
    • Development. Dicing up RNAs
    • Ambros V. Development. Dicing up RNAs. Science 293 (2001) 811-813
    • (2001) Science , vol.293 , pp. 811-813
    • Ambros, V.1
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116 (2004) 281-297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 0003686779 scopus 로고
    • Belasco J.G., and Braverman G. (Eds), Academic Press Inc., San Diego, USA
    • In: Belasco J.G., and Braverman G. (Eds). Control of Messenger RNA Stability (1993), Academic Press Inc., San Diego, USA
    • (1993) Control of Messenger RNA Stability
  • 5
    • 19344370167 scopus 로고    scopus 로고
    • Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing
    • Bennasser Y., Le S.Y., Benkirane M., and Jeang K.T. Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing. Immunity 22 (2005) 607-619
    • (2005) Immunity , vol.22 , pp. 607-619
    • Bennasser, Y.1    Le, S.Y.2    Benkirane, M.3    Jeang, K.T.4
  • 6
    • 33749048265 scopus 로고    scopus 로고
    • MicroRNAs in human immunodeficiency virus-1 infection
    • Bennasser Y., Le S.-Y., Yeung M.L., and Jeang K.T. MicroRNAs in human immunodeficiency virus-1 infection. Meth. Mol. Biol. 342 (2006) 241-252
    • (2006) Meth. Mol. Biol. , vol.342 , pp. 241-252
    • Bennasser, Y.1    Le, S.-Y.2    Yeung, M.L.3    Jeang, K.T.4
  • 7
    • 0033046510 scopus 로고    scopus 로고
    • Role for mRNA localization in translational activation but not spatial restriction of nanos RNA
    • Bergsten S.E., and Gavis E.R. Role for mRNA localization in translational activation but not spatial restriction of nanos RNA. Development 126 (1999) 659-699
    • (1999) Development , vol.126 , pp. 659-699
    • Bergsten, S.E.1    Gavis, E.R.2
  • 8
    • 0020794173 scopus 로고
    • Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences
    • Cech T.R., Tanner N.K., Tinoco I., Weir B.R., Zuker M., and Perlman P.S. Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences. Proc. Natl. Acad. Sci. U.S.A. 80 (1983) 3903-3908
    • (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , pp. 3903-3908
    • Cech, T.R.1    Tanner, N.K.2    Tinoco, I.3    Weir, B.R.4    Zuker, M.5    Perlman, P.S.6
  • 10
    • 0030059840 scopus 로고    scopus 로고
    • RNA recognition and translational regulation by a homeodomain protein
    • Dubnau J., and Struhl G. RNA recognition and translational regulation by a homeodomain protein. Nature 379 (1996) 694-699
    • (1996) Nature , vol.379 , pp. 694-699
    • Dubnau, J.1    Struhl, G.2
  • 12
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A., Xu S., Montgomery M.K., Kostas S.A., Driver S.E., and Mello C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391 (1998) 806-811
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 13
    • 0032515011 scopus 로고    scopus 로고
    • The destinies and destinations of RNAs
    • Hazelrigg T. The destinies and destinations of RNAs. Cell 95 (1998) 451-460
    • (1998) Cell , vol.95 , pp. 451-460
    • Hazelrigg, T.1
  • 15
    • 0028258377 scopus 로고
    • An RNA pattern matching program with enhanced performance and portability
    • Laferriere A., Gautheret D., and Cedergren R. An RNA pattern matching program with enhanced performance and portability. CABIOS 10 (1994) 211-212
    • (1994) CABIOS , vol.10 , pp. 211-212
    • Laferriere, A.1    Gautheret, D.2    Cedergren, R.3
  • 16
    • 0344375092 scopus 로고    scopus 로고
    • Discovering well-ordered folding patterns in nucleotide sequences
    • Le S.Y., Chen J.H., Konings D., and Maizel Jr. J.V. Discovering well-ordered folding patterns in nucleotide sequences. Bioinformatics 19 (2003) 354-361
    • (2003) Bioinformatics , vol.19 , pp. 354-361
    • Le, S.Y.1    Chen, J.H.2    Konings, D.3    Maizel Jr., J.V.4
  • 17
    • 0000688594 scopus 로고
    • Efficient searches for unusual folding regions in RNA Sequences
    • Sarma R.H., and Sarma M.H. (Eds), Adenine Press, Schenectady, New York
    • Le S.Y., Chen J.H., and Maizel Jr. J.V. Efficient searches for unusual folding regions in RNA Sequences. In: Sarma R.H., and Sarma M.H. (Eds). Structure & Methods: Human Genome Initiative and DNA Recombination Vol. 1 (1990), Adenine Press, Schenectady, New York 127-136
    • (1990) Structure & Methods: Human Genome Initiative and DNA Recombination , vol.1 , pp. 127-136
    • Le, S.Y.1    Chen, J.H.2    Maizel Jr., J.V.3
  • 18
    • 0027159984 scopus 로고
    • Prediction of alternative RNA secondary structures based on fluctuating thermodynamic parameters
    • Le S.Y., Chen J.H., and Maizel Jr. J.V. Prediction of alternative RNA secondary structures based on fluctuating thermodynamic parameters. Nucl. Acids Res. 21 (1993) 2173-2178
    • (1993) Nucl. Acids Res. , vol.21 , pp. 2173-2178
    • Le, S.Y.1    Chen, J.H.2    Maizel Jr., J.V.3
  • 19
    • 34548101654 scopus 로고    scopus 로고
    • Finding conserved well-ordered RNA structures in genomic sequences
    • Le S.Y., Maizel J.V., and Zhang Jr. K. Finding conserved well-ordered RNA structures in genomic sequences. Inter. J. Comput. Intell. Appl. 4 (2004) 417-430
    • (2004) Inter. J. Comput. Intell. Appl. , vol.4 , pp. 417-430
    • Le, S.Y.1    Maizel, J.V.2    Zhang Jr., K.3
  • 20
    • 34548494683 scopus 로고    scopus 로고
    • Computational discovery of distinct RNA elements with functional structures in genomic sequences
    • Le S.Y., and Maizel Jr. J.V. Computational discovery of distinct RNA elements with functional structures in genomic sequences. Recent Res. Devel. Mol. Cell. Biol. 5 (2004) 63-77
    • (2004) Recent Res. Devel. Mol. Cell. Biol. , vol.5 , pp. 63-77
    • Le, S.Y.1    Maizel Jr., J.V.2
  • 22
    • 0031308802 scopus 로고    scopus 로고
    • mRNA stability and the control of gene expression
    • Liebhaber S.A. mRNA stability and the control of gene expression. Nucl. Acids Sympos. Ser. 36 (1997) 29-32
    • (1997) Nucl. Acids Sympos. Ser. , vol.36 , pp. 29-32
    • Liebhaber, S.A.1
  • 23
    • 0031806104 scopus 로고    scopus 로고
    • Mutational analysis of an RNA recognition element that mediates localization of bicoid mRNA
    • Macdonald P.M., and Kerr K. Mutational analysis of an RNA recognition element that mediates localization of bicoid mRNA. Mol. Cell Biol. 18 (1998) 3788-3795
    • (1998) Mol. Cell Biol. , vol.18 , pp. 3788-3795
    • Macdonald, P.M.1    Kerr, K.2
  • 25
    • 0004194908 scopus 로고    scopus 로고
    • Simons R.W., and Grunberg-Manago M. (Eds), Cold Spring Harbor Lab. Press, New York
    • In: Simons R.W., and Grunberg-Manago M. (Eds). RNA Structure and Function (1998), Cold Spring Harbor Lab. Press, New York
    • (1998) RNA Structure and Function
  • 26
    • 0037123601 scopus 로고    scopus 로고
    • Ancient pathways programmed by small RNAs
    • Zamore P.D. Ancient pathways programmed by small RNAs. Science 296 (2002) 1265-1269
    • (2002) Science , vol.296 , pp. 1265-1269
    • Zamore, P.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.