The antirepressor needed for induction of linear plasmid-prophage N15 belongs to the SOS regulon

Journal of Bacteriology

Volumn 189, Issue 17, 2007, Pages 6333-6338

  Mardanov, Andrey V ^a   Ravin, Nikolai V ^a  

^a INSTITUTE OF BIOENGINEERING   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

LEXA PROTEIN; MITOMYCIN C; PROTEIN CB; RECA PROTEIN; REPRESSOR PROTEIN; SOS PROTEIN; UNCLASSIFIED DRUG;

ANTC GENE; ARTICLE; BACTERIAL GENE; CHROMOSOME; COLIPHAGE; CONTROLLED STUDY; COVALENT BOND; DNA DAMAGE; GENE IDENTIFICATION; MOLECULAR INTERACTION; NONHUMAN; PLASMID; PRIORITY JOURNAL; PROMOTER REGION; PROPHAGE; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; REGULATORY MECHANISM; REGULON;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; COLIPHAGES; DNA, VIRAL; MITOMYCIN; MOLECULAR SEQUENCE DATA; PLASMIDS; PROMOTER REGIONS (GENETICS); PROPHAGES; PROTEIN BINDING; REC A RECOMBINASES; REPRESSOR PROTEINS; SERINE ENDOPEPTIDASES; VIRAL PROTEINS; VIRUS ACTIVATION;

EID: 34548489638     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00599-07     Document Type: Article

References (38)

1. Brumby, A. M., I. Lamont, I. B. Dodd, and J. B. Egan. 1996. Defining the SOS operon of coliphage 186. Virology 219:105-114.
2. Bunny, K., J. Liu, and J. Roth. 2002. Phenotypes of lexA mutations in Salmonella enterica: evidence for a lethal lexA null phenotype due to the Fels-2 prophage. J. Bacteriol. 184:6235-6249.
3. Campbell, A., and D. Botstein. 1983. Evolution of the lambdoid phages, p. 365-380. In R. W. Hendrix, J. W. Roberts, F. W. Stahl, and R. A. Weisberg (ed.), Lambda II. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
4. Casadaban, M. J., and S. N. Cohen. 1980. Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J. Mol. Biol. 138:179-207.
5. Casjens, S. R., E. B. Gilcrease, W. M. Huang, K. L. Bunny, M. L. Pedulla, M. E. Ford, J. M. Hourtz, G. F. Hatfull, and R. W. Hendrix. 2004. The pKO2 linear plasmid prophage of Klebsiella oxytoca. J. Bacteriol. 186:1818-1832.
6. Citron, M., and H. Schuster. 1990. The c4 repressors of bacteriophages P1 and P7 are antisense RNAs. Cell 62:591-598.
7. Daniels, D. L., J. L. Schroeder, W. Szybalski, F. Sanger, A. R. Coulson, G. F. Hong, D. F. Hill, G. F. Petersen, and F. R. Blattner. 1983. Complete annotated lambda sequence, p. 519-676. In R. W. Hendrix, J. W. Roberts, F. W. Stahl, and R. A. Weisberg (ed.), Lambda II. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
8. Dehb, G., S. Zangrossi, P. Sabbattini, G. Sironi, and D. Ghisotti. 1992. Bacteriophage P4 immunity controlled by small RNAs via transcription termination. Mol. Microbiol. 6:3415-3425.
9. Dmitrova, M., G. Younes-Cauet, P. Oertel-Buchheit, D. Porte, M. Schnarr, and M. Granger-Schnarr. 1998. A new LexA-based genetic system for monitoring and analyzing protein heterodimerization in Escherichia coli. Mol. Gen. Genet. 257:205-212.
10. Fernandez De Henestrosa, A. R., T. Ogi, S. Aoyagi, D. Charm, J. J. Hayes, H. Ohmori, and R. Woodgate. 2000. Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol. Microbiol. 35:1560-1572.
11. Friedman, D., and M. Gottesman. 1983. Lytic mode of lambda development, p. 21-51. In R. W. Hendrix, J. W. Roberts, F. W. Stahl, and R. A. Weisberg (ed.), Lambda II. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
12. Grant, S. G., J. Jessee, F. R. Bloom, and D. Hanahan. 1990. Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proc. Natl. Acad. Sci. USA 87:4645-4649.
13. Guzman, L. M., D. Belin, M. J. Carson, and J. Beckwith. 1995. Tight regulation, modulation, and high-level expression by vectors containing arabinose PBAD promoter. J. Bacteriol. 177:4121-4130.
14. Hertwig, S., I. Klein, V. Schmidt, S. Beck, J. A. Hammerl, and B. Appel. 2003. Sequence analysis of the genome of the temperate Yersinia enterocolitica phage PY54. J. Mol. Biol. 331:605-622.
15. Kim, B., and J. W. Little. 1993. LexA and λ Cl repressors as enzymes: specific cleavage in an intermolecular reaction. Cell 73:1165-1173.
16. Lamont, I., A. M. Brumby, and J. B. Egan. 1989. UV induction of coliphage 186: prophage induction as an SOS function. Proc. Natl. Acad. Sci. USA 86:5492-5496.
17. Lewis, L. K., G. R. Harlow, L. A. Gregg-Jolly, and D. W. Mount. 1994. Identification of high affinity binding sites for LexA which define new DNA damage-inducible genes in Escherichia coli. J. Mol. Biol. 241:507-523.
18. Lin, L. L., and J. W. Little. 1989. Autodigestion and RecA-dependent cleavage of Ind- mutant LexA proteins. J. Mol. Biol. 210:439-452.
19. Little, J. W. 1984. Autodigestion of lexA and phage lambda repressors. Proc. Natl. Acad. Sci. USA 81:1375-1379.
20. Little, J. W., and D. W. Mount. 1982. The SOS regulatory system of Escherichia coli. Cell 29:11-22.
21. Lobocka, M. B., A. N. Svarchevsky, V. N. Rybchin, and M. B. Yarmolinsky. 1996. Characterization of the primary immunity region of the Escherichia coli linear prophage N15. J. Bacteriol. 178:2902-2910.
22. Mardanov, A. V., and N. V. Ravin. 2006. Functional characterization of the repA replication gene of linear plasmid prophage N15. Res. Microbiol. 157: 176-183.
23. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
24. Quinones, M., H. H. Kimsey, and M. K. Waldor. 2005. LexA cleavage is required for CTX prophage induction. Mol. Cell 17:291-300.
25. Ravin, N., A. Svarchevsky, and G. Deho. 1999. The anti-immunity system of phage-plasmid N15: identification of the antirepressor gene and its control by a small processed RNA. Mol. Microbiol. 34:980-984.
26. Ravin, N. V. 2003. Mechanisms of replication and telomere resolution of the linear plasmid prophage N15. FEMS Microbiol. Lett. 22:1-6.
27. Ravin, N. V., and V. K. Ravin. 1994. An ultrahigh-copy plasmid based on the replicon of the temperate bacteriophage N15. Mol. Gen. Mikrobiol. Virusol. 1:37-39.
28. Ravin, N. V., J. Rech, and D. Lane. 2003. Mapping of functional domains in F plasmid partition proteins reveals a bipartite SopB-recognition domain in SopA. J. Mol. Biol. 329:875-889.
29. Ravin, V., and M. G. Shulga. 1970. The evidence of extrachromosomal location of prophage N15. Virology 40:800-805.
30. Ravin, V., N. Ravin, S. Casjens, M. E. Ford, G. F. Hatfull, and R. W. Hendrix. 2000. Genomic sequence and analysis of the atypical temperate bacteriophage N15. J. Mol. Biol. 299:53-73.
31. Reece, K. S., and G. J. Phillips. 1995. New plasmids carrying antibiotic resistance cassettes. Gene 165:141-142.
32. Sauer, R. T., M. J. Ross, and M. Ptashne. 1982. Cleavage of the lambda and P22 repressors by RecA protein. J. Biol. Chem. 257:4458-4462.
33. Shearwin, K. E., A. M. Brumby, and J. B. Egan. 1998. The Turn protein of coliphage 186 is an antirepressor. J. Biol. Chem. 273:5708-5715.
34. Simons, R. W., F. Houman, and N. Kleckner. 1987. Improved single and multicopy lac-based cloning vector for protein and operon fusions. Gene 53:85-96.
35. Slilaty, S. N., and J. W. Little. 1987. Lysine-156 and serine-119 are required for LexA repressor cleavage: a possible mechanism. Proc. Natl. Acad. Sci. USA 84:3987-3991.
36. Susskind, M. M., and D. Botstein. 1975. Mechanism of action of Salmonella phage P22 antirepressor. J. Mol. Biol. 98:413-424.
37. Tang, M., X. Shen, E. G. Frank, M. O'Donnell, R. Woodgate, and M. F. Goodman. 1999. UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V. Proc. Natl. Acad. Sci. USA 96:8919-8924.
38. Walker, G. C. 1987. The SOS response of Escherichia coli, p. 1346-1357. In J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Urnbarger (ed.), Escherichia coli and Salmonella typhimurium. American Society for Microbiology, Washington, DC.