The first genetic and comparative map of white lupin (Lupinus albus L.): Identification of QTLs for anthracnose resistance and flowering time, and a locus for alkaloid content

DNA Research

Volumn 14, Issue 2, 2007, Pages 59-70

  Phan, Huyen T T ^a   Ellwood, Simon R ^a   Adhikari, Kedar ^b,c   Nelson, Matthew N ^c   Oliver, Richard P ^a  

^a MURDOCH UNIVERSITY   (Australia)

^b DEPARTMENT OF AGRICULTURE AND FOOD WESTERN AUSTRALIA   (Australia)

^c UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

Anthracnose; Lupinus albus; Medicago truncatula; Synteny

Indexed keywords

ALKALOID;

ARTICLE; BARREL MEDIC; CHROMOSOME MAP; COMPARATIVE STUDY; EVOLUTION; FLOWER; GENETICS; GROWTH, DEVELOPMENT AND AGING; LUPIN; METABOLISM; MICROBIOLOGY; PLANT DISEASE; QUANTITATIVE TRAIT LOCUS; SPECIES DIFFERENCE;

ALKALOIDS; CHROMOSOME MAPPING; EVOLUTION; FLOWERS; LUPINUS; MEDICAGO TRUNCATULA; PLANT DISEASES; QUANTITATIVE TRAIT LOCI; SPECIES SPECIFICITY;

EID: 34548453690     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsm009     Document Type: Article

References (56)

1. Langridge, D. F., and Goodman, R. D. 1985, Honeybee pollination of lupins (Lupinus albus cv. Hamburg), Aust. J. Expt. Agric., 25, 220-223.
2. Payne, W. A., Chen, C., and Ball, D. A. 2004, Agronomic potential of narrow-leafed and white lupins in the inland Pacific northwest, Agron J, 96, 1501-1508.
3. Pazy, B., Heyn, C., Herrnstadt, I., and Plitmann, U. 1977, Studies in populations of the Old World Lupinus species. I. Chromosomes of the East-Mediterranean lupines, Israel J. Bot., 26, 115-127.
4. Naganowska, B., Wolko, B., Sliwinska, E., and Kaczmarek, Z. 2003, Nuclear DNA content variation and species relationships in the genus Lupinus (Fabaceae), Ann. Bot., 92, 349-355.
5. Lindbeck, K. D., Murray, G. M., Priest, M., Dominiak, B. C., and Nikandrow, A. 2001, Survey for anthracnose caused by Colletotrichum gloeosporioides in crop lupins (Lupinus angustifolius, L. albus) and ornamental lupins (L. polyphyllus) in New South Wales, Australasian Plant Pathology, 27, 259-262.
6. Noffsinger, S.L., and van Santen, E. 2005, Evaluation of Lupinus albus L. Germplasm for the Southeastern USA, Crop Sci, 45, 1941-1950.
7. Uauy, R., Gattas, V., and Yanez, E. 1995, In Simopoulos, A. M. (Ed.). World Review of Nutrition and Dietetics. Karger, Basel, Vol. 77, 75-88.
8. Hall, R. S., Johnson, S. K., Baxter, A. L., and Ball, M. J. 2004, Lupin kernel fibre-enriched foods beneficially modify serum lipids in men, Eur. J. Clin. Nutr., 59, 325-333.
9. Edwards, A. C. and van Barneveld, R. J. 1998, In Gladstones, J. S., Atkins, C. and Hamblin, J. (Eds.), Lupins as Crop Plants: Biology, Production and Utilization. CAB International, Wallingford, pp. 385-410.
10. Hamama, A. A. and Bhardwaj, H. L. 2004, Phytosterols, triterpene alcohols, and phospholipids in seed oil from white lupin, J. Am. Oil Chem. Soc., 81, 1039-1044.
11. Dinkelaker, B., Romheld, V., and Marschner, H. 1989, Citric acid excretion and precipitation of calcium citrate in the rhizosphere of white lupin (Lupinus albus L.), Plant Cell Environ., 12, 285-292.
12. Gardner, W. K., Parbery, D. G., and Barber, D. A. 1982, The acquisition of phosphorus by Lupinus albus L. I. Some characteristics of the soil/root interface, Plant Soil, 68, 19-32.
13. Johnson, J. F., Vance, C. P., and Allan, D. L. 1996, Phosphorus deficiency in Lupinus albus (altered lateral root development and enhanced expression of phosphoenol-pyruvate carboxylase), Plant Physiol., 112, 31-41.
14. Massonneau, A., Langlade, N., Léon, S., et al. 2001, Metabolic changes associated with cluster root development in white lupin (Lupinus albus L.): relationship between organic acid excretion, sucrose metabolism and energy status, Planta, 213, 534-542.
15. Neumann, G. and Martinoia, E. 2002, Cluster roots - an underground adaptation for survival in extreme environments, Trends Plant Sci., 7, 162-167.
16. Devos, K. M., and Gale, M. D. 2000, Genome relationships: the grass model in current research, Plant Cell, 12, 637-646.
17. Lagercrantz, U., and Lydiate, D. J. 1996, Comparative genome mapping in Brassica, Genetics, 144, 1903-1910.
18. Moore, G., Devos, K. M., Wang, Z., and Gale, M. D. 1995, Cereal genome evolution - grasses, line up and form a circle, Curr. Biol., 5, 737-739.
19. Ventelon, M., Deu, M., Garsmeur, O., et al. 2001, A direct comparison between the genetic maps of sorghum and rice, Theor. Appl. Genet., 102, 379-386.
20. Choi, H.-K., Mun, J.-H., Kim, D.-J., et al. 2004, Estimating genome conservation between crop and model legume species, PNAS, 101, 15289-15294.
21. Kalo, P., Seres, A., Taylor, S., et al. 2004, Comparative mapping between Medicago sativa and Pisum sativum, Mol. Genet. Genomics, 272, 235-246.
22. Zhu, H., Choi, H.-K., Cook, D. R., and Shoemaker, R. C. 2005, Bridging model and crop legumes through comparative genomics, Plant Physiol., 137, 1189-1196.
23. Nelson, M., Phan, H., Ellwood, S., et al. 2006, The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula, Theor. Appl. Genet., 113, 225-238.
24. Phan, H. T. T., Ellwood, S. R., Ford, R., Thomas, S., and Oliver, R. 2006, Differences in syntenic complexity between Medicago truncatula with Lens culinaris and Lupinus albus, Funct. Plant Biol., 33, 775-782.
25. Lukens, L., Zou, F., Lydiate, D., Parkin, I., and Osborn, T. 2003, Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana, Genetics, 164, 359-372.
26. Weeden, N. F., Muehlbauer, F. J., and Ladizinsky, G. 1992, Extensive conservation of linkage relationships between pea and lentil genetic maps, J. Hered., 83, 123-129.
27. Phan, H. T. T., Ellwood, S. R., Hane, J. K., Ford, R., Materne, M., and Oliver, R. P. 2007, Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris, Theor. Appl. Genet., 114, 549-558.
28. Aubert, G., Morin, J., Jacquin, F., et al. 2006, Functional mapping in pea, as an aid to the candidate gene selection and for investigating synteny with the model legume Medicago truncatula, Theor. Appl. Genet., 112, 1024-1041.
29. Choi, H. K., Luckow, M. A., Doyle, J., and Cook, D. R. 2006, Development of nuclear gene-derived molecular markers linked to legume genetic maps, Mol. Genet. Genomics, 276, 56-70.
30. Choi, H.-K., Kim, D., Uhm, T., et al. 2004, A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa, Genetics, 166, 1463-1502.
31. Eujayl, I., Sledge, M., Wang, L., et al. 2004, Medicago truncatula EST-SSRs reveal cross-species genetic markers for Medicago spp., Theor. Appl. Genet., 108, 414-422.
32. Gutierrez, M. V., Vaz Patto, M. C., Huguet, T., Cubero, J. I., Moreno, M. T., and Torres, A. M. 2005, Cross-species amplification of Medicago truncatula microsatellites across three major pulse crops, Theor. Appl. Genet., 110, 1210-1217.
33. Vos, P., Hogers, R., Bleeker, M., et al. 1995, AFLP: a new technique for DNA fingerprinting, Nucl. Acids Res., 23, 4407-4414.
34. Ellwood, S. R., D'Souza, N. K., Kamphuis, L. G., Burgess, T. I., Nair, R. M., and Oliver, R. P. 2006, SSR analysis of the Medicago truncatula SARDI core collection reveals substantial diversity and unusual genotype dispersal throughout the Mediterranean basin, Theor. Appl. Genet., 112, 977-983.
35. Manly, K. F., Cudmore, R. H., and Meer, J. M. 2001, Map Manager QTX, cross-platform software for genetic mapping, Mamm. Genome, 12, 930-932.
36. King, G. J. 2002, Through a genome, darkly: comparative analysis of plant chromosomal DNA, Plant Mol. Biol., 48, 5-20.
37. Boersma, J. G., Pallotta, M., Li, C., Buirchell, B. J., Sivasithamparam, K., and Yang, H. 2005, Construction of a genetic linkage map using MFLP and identification of molecular markers linked to domestication genes in narrow-leafed lupin (Lupinus angustifolius L.), Cell. Mol. Biol. Lett., 10, 331-344.
38. Flandez-Galvez, H., Ford, R., Pang, E. C. K., and Taylor, P. W. J. 2003, An intraspecific linkage map of the chickpea (Cicer arietinum L.) genome based on sequence tagged microsatellite site and resistance gene analog markers, Theor. Appl. Genet., 106, 1447-1456.
39. Muehlbauer, F. J., Cho, S., Sarker, A., et al. 2006, Application of biotechnology in breeding lentil for resistance to biotic and abiotic stress, Euphytica, 147, 149-165.
40. Paran, I., Goldman, I., Tanksley, S. D., and Zamir, D. 1995, Recombinant inbred lines for genetic mapping in tomato, Theor. Appl. Genet., 90, 542-548.
41. Quillet, M. C., Madjidian, N., Griveau, Y., et al. 1995, Mapping genetic factors controlling pollen viability in an interspecific cross in Helianthus sect. Helianthus, Theor. Appl. Genet., 91, 1195-1202.
42. Tadmor, Y., Zamir, D., and Ladizinsky, G. 1987, Genetic mapping of an ancient translocation in the genus Lens, Theor. Appl. Genet., 73, 883-892.
43. 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.), Mol. Genet. Genomics, 253, 535-545.
44. Zhu, H., Cannon, S. B., Young, N. D., and Cook, D. R. 2002, Phylogeny and genomic organization of the TIR and non-TIR NBS-LRR resistance gene family in Medicago truncatula, Mol. Plant Microbe Interact., 15, 529-359.
45. Kuittinen, H., Sillanpaa, M. J., and Savolainen, O. 1997, Genetic basis of adaptation: flowering time in Arabidopsis thaliana, Theor. Appl. Genet., 95, 573-583.
46. Lichtenzveig, J., Bonfil, D. J., Zhang, H.-B., Shtienberg, D., and Abbo, S. 2006, Mapping quantitative trait loci in chickpea associated with time to flowering and resistance to Didymella rabiei the causal agent of Ascochyta blight, Theor. Appl. Genet., 113, 1357-1369.
47. Yamanaka, N., Ninomiya, S., Hoshi, M., et al. 2001, An informative linkage map of soybean reveals QTLs for flowering time, leaflet morphology and regions of segregation distortion, DNA Res, 8, 61-72.
48. Liu, B. H. 1985, Statistical Genomics: Linkage, Mapping and QTL Analysis. CRC Press, Boca Raton.
49. Tanksley, S. D. 1993, Mapping polygenes, Annual Review of Genetics, 27, 205-233.
50. Harrison, J. E. M., and Williams, W. 1982, Genetical control of alkaloids in Lupinus albus, Euphytica, 31, 357-364.
51. Yan, H., Mudge, J., Kim, D., Shoemaker, R., Cook, D., and Young, N. 2004, Comparative physical mapping reveals features of microsynteny between Glycine max, Medicago truncatula, and Arabidopsis thaliana, Genome, 47, 141-155.
52. Huang, S., van der Vossen, E. A., Kuang, H., et al. 2005, Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato, Plant J., 42, 251-261.
53. Armstead, I. P., Skot, L., Turner, L. B., et al. 2005, Identification of perennial ryegrass (Lolium perenne (L.)) and meadow fescue (Festuca pratensis (Huds.)) candidate orthologous sequences to the rice Hd1(Se1) and barley HvCO1 CONSTANS-like genes through comparative mapping and microsynteny, New Phytol., 167, 239-247.
54. Börner, A., Korzun, V., and Worland, A. J. 1998, Comparative genetic mapping of loci effecting plant height and development in cereals, Euphytica, 100, 245-248.
55. Mammadov, J., Steffenson, B., and Maroof, M. 2005, High-resolution mapping of the barley leaf rust resistance gene Rph5 using barley expressed sequence tags (ESTs) and synteny with rice, Theor. Appl. Genet., 111, 1651-1660.
56. Dirlewanger, E., Graziano, E., Joobeur, T., et al. 2004, Comparative mapping and marker-assisted selection in Rosaceae fruit crops, PNAS, 101, 9891-9896.