Externally steered relaxation of tight polyethylene tangles with different initial knot topologies

Theoretical Chemistry Accounts

Volumn 118, Issue 3, 2007, Pages 549-556

  Arteca, Gustavo A ^a  

^a LAURENTIAN UNIVERSITY   (Canada)

Author keywords

Knot localization; Polymer knots; Polymer stretching; Steered molecular dynamics

Indexed keywords

EID: 34548439786     PISSN: 1432881X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00214-007-0344-0     Document Type: Article

References (37)

1. O'Hara J (2003). Energy of knots and conformal geometry. World Scientific, Singapore
2. Sumners DW and Whittington SG (1988). J Phys A 21: 1689
3. Wasserman SA and Cozzarelli NR (1986). Science 232: 951
4. Brûlet A, Cotton JP, Lapp A and Jannink G (1996). J Phys II Fr 6: 331
5. Arai Y, Yasuda R, Akashi K-I, Harada Y, Miyata H, Kinishita K and Itoh I (1999). Nature 399: 446
6. Bao XR, Lee HJ and Quake SR (2003). Phys Rev Lett 91: 265506
7. Ben-Naim E, Daya ZA, Vorobieff P and Ecke RE (2001). Phys Rev Lett 86: 1414
8. Belmonte A, Shelley MJ, Eldakar ST and Wiggins CH (2001). Phys Rev Lett 87: 114301
9. Arsuaga J, Vázquez M, Trigeros S, Sumners DW and Roca J (2002). Proc Natl Acad Sci USA 99: 5373
10. Arsuaga J, Vázquez M, McGuirk P, Trigeros S, Sumners DW and Roca J (2005). Proc Natl Acad Sci USA 102: 9165
11. Grosberg AY, Feigel A and Rabin Y (1996). Phys Rev 54: 6618
12. Lai P-Y (1996). Phys Rev E 53: 3819
13. Weber C, Stasiak A, DeLos Ríos P and Dietler G (2006). Biophys J 90: 3100
14. Orlandini E, Stella AL and Vanderzande C (2003). Phys Rev 68: 031804
15. Belmonte A (2005). Knot dynamics in a driven hanging chain: experimental results. In: Calvo, JA, Millett, KC, Rawdon, EJ and Stasiak, A (eds) Physical and numerical methods in knot theory, including applications to the life sciences, series knots and everything, vol 36, pp 65-74. World Scientific, River Edge
16. Lai P-Y (2002). Phys Rev E 66: 021805
17. Lai P-Y, Sheng Y-J and Tsao H-K (2001). Phys Rev Lett 87: 175503
18. Arteca GA (2003). Phys Chem Chem Phys 5: 407
19. Chtcheglova LA, Shubeita GT, Sekatskii SK and Dietler G (2004). Biophys J 86: 1177
20. Arteca GA (2004). Phys Chem Chem Phys 6: 3500
21. Arteca GA and Li Z (2004). Chem Phys Lett 399: 496
22. Arteca GA (2000). Chem Phys Lett 328: 45
23. Dhaliwal M and Weinberg N (2004). J Phys Org Chem 17: 793
24. Saitta AM, Soper PD, Wasserman E and Klein ML (1999). Nature 399: 46
25. Marcone B, Orlandini E, Stella AL and Zonta F (2005). J Phys A 38: L15
26. Shimamura MK, Kamata K and Yao S (2005). Phys Rev E 72: 041804
27. Lu H, Isralewitz B, Krammer A, Vogel V and Schulten K (1998). Biophys J 75: 662
28. Strick TR, Dessinges M-N, Charvin G, Dekker NH, Allemand J-F, Bensimon D and Croquette V (2003). Rep Prog Phys 66: 1
29. Bukert U and Allinger NL (1982). Molecular mechanics. ACS Monographs, Washington DC
30. Berendsen HJC, Postma JPM, DiNola A, Haak JR and Gunsteren WF (1984). J Chem Phys 81: 3684
31. Arteca GA (1993). Biopolymers 33: 1829
32. Stasiak A, Katritch V, Bednar J, Michoud D and Dubochet D (1996). Nature 384: 122
33. Arteca GA, Reimann CT and Tapia O (2001). Mass Spectrom Revs 20: 402
34. Shimamura MK and Deguchi T (2003). Phys Rev E 68: 061108
35. Arteca GA and Tapia O (2004). Chem Phys Lett 383: 462
36. Sheng Y-J, Lai P-Y and Tsao H-K (2000). Phys Rev E 61: 2895
37. Brown S, Lenczycki T and Szamel G (2001). Phys Rev E 63: 052801