Detection of Paracoccidioides brasiliensis by PCR in biopsies from patients with paracoccidioidomycosis: Correlation with the histopathological pattern

Pathologica

Volumn 99, Issue 2, 2007, Pages 41-45

  Ricci, G ^a   Guerreiro Da Silva, I D C ^a   Sano, A ^b   Borra, R C ^c   Franco, Marcelo ^a,d  

^a FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^b CHIBA UNIVERSITY   (Japan)

^c IBIRAPUERA UNIVERSITY   (Brazil)

^d Edifício Lemos Torres ^*  (Brazil)

Author keywords

Granuloma; Mycosis; Paracoccidioides brasiliensis; Paracoccidioidomycosis; PCR

Indexed keywords

FUNGAL DNA; PARAFFIN; BACTERIAL DNA;

AMPLICON; ARTICLE; BIOPSY; CELL VIABILITY; CORRELATION ANALYSIS; DIAGNOSTIC ACCURACY; DIAGNOSTIC VALUE; DNA DETERMINATION; FUNGAL CELL; FUNGAL DETECTION; FUNGUS IDENTIFICATION; GENE AMPLIFICATION; GRANULOMA; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; INTEGUMENT; INTERMETHOD COMPARISON; LUNG BIOPSY; LYMPH NODE BIOPSY; NONHUMAN; PARACOCCIDIOIDES BRASILIENSIS; POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; SOUTH AMERICAN BLASTOMYCOSIS; SYSTEMIC MYCOSIS; TISSUE PRESERVATION; TONGUE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PARACOCCIDIOIDES; PATHOLOGY;

BIOPSY; DNA, BACTERIAL; HUMANS; PARACOCCIDIOIDES; PARACOCCIDIOIDOMYCOSIS; POLYMERASE CHAIN REACTION;

EID: 34548381257     PISSN: 00312983     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Brito T, Franco MF. Granulomatous inflammation. Rev Inst Med Trop São Paulo 1994;36:185-92.
2. Sano A, Yokoyama K, Tamura M, Mikami Y, Takahashi I, Fukushima K, et al. Detection of gp43 and ITS1-5.8S-ITS2 ribosomal RNA genes of Paraeoccidioides brasiliensis in paraffin-embedded tissue. Med Mycol 2001;42:23-7.
3. Salina MA, Shikanai-Yasuda MA, Poncio-Mendes R, Vieira BB, Mendes-Giannini MJS. Detection of circulating Paracoccidioides brasiliensis antigen in urine of paracoccidioidomycosis patients before and during treatment. J Clin Microbiol 1998;36:1723-8.
4. Mendes-Giannini MJS, Bueno JP, Shikanai-Yasuda MA, Ferreira WA, Masuda A. Detection of a 43,000-molecular weight glycoprotein in sera of patients with paracoccidioidomycosis. J Clin Microbiol 1989; 27:2842-5.
5. Gomes GM, Cisalpino OS, Taborda CP, Camargo ZP. PCR for diagnosis of paracoccidioidomycosis. J Clin Microbiol 2000;38:3478-80.
6. San-Blas G, Niño-Vega G, Iturriaga T. Paracoccidioides brasiliensis and paracoccidioidomycosis: molecular approaches to morphogenesis, diagnosis, epidemiology, taxonomy and genetics. Med Mycol 2002;40:225-42.
7. Bialek R, Ibricevic A, Aepinus C, Najvar LK, Fothergill AW, Knobloch J, et al. Detection of Paracoccidioides brasiliensis in tissue samples by nested PCR assay. J Clin Microbiol 2000;38:2940-2.
8. Lacaz CS, Porto E, Martins JEC. Paracoccidioidomicose. In: Lacaz CS, Porto E, Martins JEC, eds. São Paulo: Micologia Médica, Sarvier 1991, p. 248-292.
9. Díez S, Garcia EA, Pino PA, Botero S, Corredor GG, Peralta LA, et al. PCR with Paracoccidioides brasiliensis specific primers: potential use in ecological studies. Rev Inst Med Trop São Paulo 1999;41:351-7.
10. Goldani LZ, Maia AL, Sugar AM. Cloning and nucleotide sequence of a specific DNA fragment from Paracoccidioides brasiliensis. J Clin Microbiol 1995;33:1652-4.
11. Goldani LZ, Sugar AM. Use of the polymerase chain reaction to detect Paracoccidioides brasiliensis in murine paracoccidioidomycosis. Am J Trop Med Hyg 1998;58:152-3.
12. Imai T, Sano A, Mikami Y, Watanabe K, Aoki FH, Branchini MLM, et al. A new PCR primer for identification of Paracoccidioides brasiliensis based on rRNA sequences coding the internal transcribed spacers (1TS) and 5.8S regions. Med Mycol 2000;38:323-6.
13. Zhang L, Cui X, Schmitt K, Hubert R, Navidi W, Arnheim N. Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci 1992;89:5847-51.
14. Schaaff F, Wedemann H, Schwinger E. Analysis of sex and Δ F508 in single amniocytes using primer extension preamplification. Hum Genet 1996;98:158-61.
15. Greer CE, Wheeler CM, Manos MM. PCR amplification from paraffin-embedded tissues: sample preparation and the effects of fixation. In: Dieffenbach CW, Dveksler GS, eds. PCR primer: a laboratory manual. New York: Cold Swing Harbor Laboratory Press 1995, p. 99-112.
16. Yamakawa DB. Detecção de Mycobacterium tuberculosis pela reagão em cadeia de polimerase em amostras fixadas em formalina e incluídas em parafina. [master dissertation]. São Paulo: Universidade Federal de São Paulo/Escola Paulista de Medicina 2003.
17. Montenegro MR, Franco MF. Pathology. In: Franco MF, Lacaz CS, Restrepo-Moreno A, Del Negro G, eds. Paracoccidioidomycosis. Boca Raton: CRC Press 1994, p. 131-147.
18. Restrepo A. Morphological aspects of Paracoccidioides brasiliensis in lymph nodes: implications for the prolonged latency of paracoccidioidomycosis? Med Mycol 2000;38:317-22.
19. Gillespie KM, Valovin SJ, Saunby J, Hunter KM, Savage DA, Middleton D, et al. HLA class II typing of whole genome amplified mouth swab DNA. Tissue Antigens 2000;56:530-8.
20. Bialek R, Feucht A, Aepinus C, Just-Nübling G, Robertson VJ, Knobloch J, et al. Evaluation of two nested-PCR assays for detection of Histoplasma capsulatum DNA in human tissue. J Clin Microbiol 2002;40:1644-7.
21. Morais FV, Barros TF, Fukada MK, Cisalpino PS, Puccia R. Polymorphism in the gene coding for immunodominant antigen gp43 from the pathogenic fungus Paracoccidioides brasiliensis. J Clin Microbiol 2000; 38:3960-6.
22. Puccia R, Schenkman S, Gorin PAJ, Travassos LR. Exocellular components of Paracoccidioides brasiliensis: identification of a specific antigen. Infect Immun 1986;53:199-206.
23. Ben-Ezra J, Johnson DA, Rossi J, Cook N, Wu A. Effect of fixation of the amplification of nucleic acids from paraffin-embedded material by the polymerase chain reaction. J Histochem Cytochem 1991;39:351-4.
24. Díaz-Cano SJ, Brady SP. DNA extraction from formalin-fixed, paraffin-embedded tissues: protein digestion as a limiting step for retrieval of high-quality DNA. Diagn Mol Pathol 1997;6:342-6.
25. Salian NV, Rish JA, Eisenach KD, Cave MD, Bates JH. Polymerase chain reaction to detect Mycobacterium tuberculosis in histologic specimens. Am J Resp Crit Care Med 1998;158:1150-5.
26. Wickham CL, Boyce M, Joyner MV, Sarsfield P, Wilkins BS, Jones DB, et al. Amplification of PCR products in excess of 600 base pairs using DNA extracted from decalcified, paraffin wax embedded bone marrow trephine biopsies. Mol Pathol 2000;53:19-23.
27. Bielawski K, Zaczek A, Lisowska U, Dybikowska A, Kowalska A, Falkiewicz B. The suitability of DNA extracted from formalin-fixed, paraffin-embedded tissues for double differential polymerase chain reaction analysis. Int J Mol Med 2001;8:573-8.
28. Sato Y, Sugie R, Tsuchiya B, Kameya T, Natori M, Mukai K. Comparison of the DNA extraction methods for polymerase chain reaction amplification from formalin-fixed and paraffin-embedded tissues. Diagn Mol Pathol 2001;10:265-71.
29. Bialek R, Cirera AC, Herrmann T, Aepinus C, Sheam-Bochsler V, Legendre AM. Nested-PCR assays for detection of Blastomyces dermatitidis DNA in paraffin-embedded canine tissue. J Clin Microbiol 2003;41:205-8.
30. Innis MA, Gelfand DH. Optimization of PCRs. In: Innins MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols. A guide to methods and applications. New York: Academic Press 1990, p. 3-12.