Deploying PHYLIP phylogenetic package on a Large Scale Distributed System

Proceedings - Seventh IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2007

Volumn , Issue , 2007, Pages 673-678

  Abdennadher, Nabil ^a   Boesch, Regis ^a  

^a University of Applied Sciences   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

DECISION TREES; GENETIC ALGORITHMS; LARGE SCALE SYSTEMS; PARALLEL ALGORITHMS; TELECOMMUNICATION SYSTEMS;

EVOLUTIONARY TREES; PHYLOGENETIC PACKAGE; PUBLIC-RESOURCE COMPUTING;

DISTRIBUTED COMPUTER SYSTEMS;

EID: 34548316417     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CCGRID.2007.36     Document Type: Conference Paper

References (26)

1. http://biowulf.nih.gov/apps/tree-puzzle-doc.html
2. http://www.tree-puzzle.de/
3. http://www.dkfz.de/tbi/tree-puzzle/
4. Heiko A. Schmidt, Phylogenese Trees from Large Datasets, 'Ph.D.' in Computer Science, Düsseldorf, Germany, 2003.
5. Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17, 368-376.
6. Strimmer, K. and von Haeseler, A. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol., 13, 964-969, 1996.
7. Adachi, J. and Hasegawa, M. MOLPHY Version 2.3 - Programs for Molecular Phylogenetics Based on Maximum Likelihood, vol. 28 of Computer Science Monographs. Institute of Statistical Mathematics, Minato-ku, Tokyo, 1996.
8. Huelsenbeck, J. P. and Ronquist, F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755, 2001.
9. P. O. A genetic algorithm for maximum-likelihood phytogeny inference using nucleotide sequence data. Mol. Biol. Evol., 15, 277-283. 1998.
10. Salter, L. A. and Pearl, D. K. Stochastic search strategy for estimation of maximum likelihood phylogenetic trees. Syst. Biol, 50, 7-17, 2001.
11. http://www.phylip.com/12. http://paup.csit.fsu.edu/
12. http://paup.csit.fsu.edu/
13. Gilles Fedak et al. XtremWeb: A Generic Global Computing System. CCGRID2001, workshop on Global Computing on Personal Devices. Brisbane, Australia, May 2001. http://xtremweb.net
14. http://boinc.berkeley.edu/
15. http://www.entropia.com/
16. http://www.ud.com/home.htm
17. Parabon Computation, Inc: The Frontier Application. Programming Interface, Version 1.5.2. 2004.
18. http://www.bittorrent.com/
19. http://www.edonkey2000.com/
20. http://www.kazaa.com/us/index.htm
21. KAN G., Peer-to-Peer: harnessing the power of disruptive technologies, Chapter Gnutella, O'Reilly, Mars 2001.
22. Ian Clarke. A Distributed Decentralised Information Storage and Retrieval System. Division of Informatics. Univ. of Edinburgh. 1999. http://freenet. sourceforge.net/
23. http://feedtree.net/
24. http://www.globus.org/
25. N. Abdennadher, R. Boesch, A Large Scale Distributed System for High Performance needs. HP-ASIA 2005, Biejing, China, December 2005.
26. N. Abdennadher, R. Boesch, A Scheduling algorithm for High Performance Peer-To-Peer Platform. CoreGrid workshop, EuroPar 06, Dresden, Germany, 2006