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Volumn 40, Issue 1, 2007, Pages 55-85

Insight into the functional versatility of RNA through model-making with applications to data fitting

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMER; NUCLEIC ACID BASE; RIBOZYME; RNA;

EID: 34548304061     PISSN: 00335835     EISSN: 14698994     Source Type: Journal    
DOI: 10.1017/S0033583507004593     Document Type: Review
Times cited : (4)

References (112)
  • 1
    • 3042848954 scopus 로고    scopus 로고
    • Crystal structure of a self-splicing group I intron with both exons
    • ADAMS, P. L., STAHLEY, M. R., KOSEK, A. B., WANG, J. & STROBEL, S. A. (2004). Crystal structure of a self-splicing group I intron with both exons. Nature 430, 45-50.
    • (2004) Nature , vol.430 , pp. 45-50
    • ADAMS, P.L.1    STAHLEY, M.R.2    KOSEK, A.B.3    WANG, J.4    STROBEL, S.A.5
  • 2
    • 0030821725 scopus 로고    scopus 로고
    • Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel
    • BABITZKE, P. (1997). Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel. Molecular Microbiology 26, 1-9.
    • (1997) Molecular Microbiology , vol.26 , pp. 1-9
    • BABITZKE, P.1
  • 4
    • 9244225713 scopus 로고    scopus 로고
    • Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
    • BATEY, R. T., GILBERT, S. D. & MONTANGE, R. K. (2004). Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature 432, 411-415.
    • (2004) Nature , vol.432 , pp. 411-415
    • BATEY, R.T.1    GILBERT, S.D.2    MONTANGE, R.K.3
  • 5
    • 34548349524 scopus 로고    scopus 로고
    • Setting the stage: The history, chemistry, and geobiology behind RNA
    • 3rd edn eds R. F. Gesteland, T. R. Cech and J. F. Atkins, pp, Cold Spring Harbor, NY: Cold Spring Harbor Press
    • BENNER, S. A., CARRIGAN, M. A., RICARDO, A. & FRYE, F. (2006). Setting the stage: the history, chemistry, and geobiology behind RNA. In RNA World, 3rd edn (eds R. F. Gesteland, T. R. Cech and J. F. Atkins), pp. 1-21. Cold Spring Harbor, NY: Cold Spring Harbor Press.
    • (2006) RNA World , pp. 1-21
    • BENNER, S.A.1    CARRIGAN, M.A.2    RICARDO, A.3    FRYE, F.4
  • 6
    • 0037418547 scopus 로고    scopus 로고
    • Mechanistic considerations for general acid-base catalysis by RNA: Revisiting the mechanism of the hairpin ribozyme
    • BEVILACQUA, P. C. (2003). Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme. Biochemistry 42, 2259-2265.
    • (2003) Biochemistry , vol.42 , pp. 2259-2265
    • BEVILACQUA, P.C.1
  • 8
    • 0347763707 scopus 로고    scopus 로고
    • Catalytic roles for proton transfer and protonation in ribozymes
    • BEVILACQUA, P. C., BROWN, T. S., NAKANO, S. & YAJIMA, R. (2004). Catalytic roles for proton transfer and protonation in ribozymes. Biopolymers 73, 90-109.
    • (2004) Biopolymers , vol.73 , pp. 90-109
    • BEVILACQUA, P.C.1    BROWN, T.S.2    NAKANO, S.3    YAJIMA, R.4
  • 11
    • 34147138346 scopus 로고    scopus 로고
    • A simple molecular model for thermophilic adaptation in functional nucleic acids
    • in press
    • BLOSE, J. M., SILVERMAN, S. K. & BEVILACQUA, P. C. (in press). A simple molecular model for thermophilic adaptation in functional nucleic acids. Biochemistry.
    • Biochemistry
    • BLOSE, J.M.1    SILVERMAN, S.K.2    BEVILACQUA, P.C.3
  • 13
    • 0031828145 scopus 로고    scopus 로고
    • Destabilizing effect of an rRNA stem-loop on an attenuator hairpin in the 5′ exon of the Tetrahymena pre-rRNA
    • CAO, Y. & WOODSON, S. A. (1998). Destabilizing effect of an rRNA stem-loop on an attenuator hairpin in the 5′ exon of the Tetrahymena pre-rRNA. RNA 4, 901-914.
    • (1998) RNA , vol.4 , pp. 901-914
    • CAO, Y.1    WOODSON, S.A.2
  • 15
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    • CARTER, A. P., CLEMONS, W. M., BRODERSEN, D. E., MORGAN-WARREN, R. J., WIMBERLY, B. T. & RAMAKRISHNAN, V. (2000). Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 407, 340-348.
    • (2000) Nature , vol.407 , pp. 340-348
    • CARTER, A.P.1    CLEMONS, W.M.2    BRODERSEN, D.E.3    MORGAN-WARREN, R.J.4    WIMBERLY, B.T.5    RAMAKRISHNAN, V.6
  • 16
    • 0034101184 scopus 로고    scopus 로고
    • Solving large RNA structures by X-ray crystallography
    • CATE, J. H. & DOUDNA, J. A. (2000). Solving large RNA structures by X-ray crystallography. Methods in Enzymology 317, 169-180.
    • (2000) Methods in Enzymology , vol.317 , pp. 169-180
    • CATE, J.H.1    DOUDNA, J.A.2
  • 18
    • 0034636981 scopus 로고    scopus 로고
    • A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme
    • CHADALAVADA, D. M., KNUDSEN, S. M., NAKANO, S. & BEVILACQUA, P. C. (2000). A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme. Journal of Molecular Biology 301, 349-367.
    • (2000) Journal of Molecular Biology , vol.301 , pp. 349-367
    • CHADALAVADA, D.M.1    KNUDSEN, S.M.2    NAKANO, S.3    BEVILACQUA, P.C.4
  • 19
    • 0031591383 scopus 로고    scopus 로고
    • The structure of an RNA ' kissing' hairpin complex of the HIV TAR hairpin loop and its complement
    • CHANG, K. Y. & TINOCO JR., I. (1997). The structure of an RNA ' kissing' hairpin complex of the HIV TAR hairpin loop and its complement. Journal of Molecular Biology 269, 52-66.
    • (1997) Journal of Molecular Biology , vol.269 , pp. 52-66
    • CHANG, K.Y.1    TINOCO JR., I.2
  • 21
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • CRICK, F. H. (1968). The origin of the genetic code. Journal of Molecular Biology 38, 367-379.
    • (1968) Journal of Molecular Biology , vol.38 , pp. 367-379
    • CRICK, F.H.1
  • 23
    • 0038170015 scopus 로고    scopus 로고
    • Metal ion binding to catalytic RNA molecules
    • DEROSE, V. J. (2003). Metal ion binding to catalytic RNA molecules. Current Opinion in Structural Biology 13, 317-324.
    • (2003) Current Opinion in Structural Biology , vol.13 , pp. 317-324
    • DEROSE, V.J.1
  • 27
    • 0029147392 scopus 로고
    • Structurally complex and highly active RNA ligases derived from random RNA sequences
    • EKLAND, E. H., SZOSTAK, J. W. & BARTEL, D. P. (1995). Structurally complex and highly active RNA ligases derived from random RNA sequences. Science 269, 364-370.
    • (1995) Science , vol.269 , pp. 364-370
    • EKLAND, E.H.1    SZOSTAK, J.W.2    BARTEL, D.P.3
  • 28
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • ELLINGTON, A. D. & SZOSTAK, J. W. (1990). In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • ELLINGTON, A.D.1    SZOSTAK, J.W.2
  • 31
    • 0032497521 scopus 로고    scopus 로고
    • Crystal structure of a hepatitis delta virus ribozyme
    • FERRE-D'AMARE, A. R., ZHOU, K. & DOUDNA, J. A. (1998). Crystal structure of a hepatitis delta virus ribozyme. Nature 395, 567-574.
    • (1998) Nature , vol.395 , pp. 567-574
    • FERRE-D'AMARE, A.R.1    ZHOU, K.2    DOUDNA, J.A.3
  • 34
    • 33646768226 scopus 로고    scopus 로고
    • Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain
    • GILBERT, S. D., STODDARD, C. D., WISE, S. J. & BATEY, R. T. (2006). Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain. Journal of Molecular Biology 359, 754-768.
    • (2006) Journal of Molecular Biology , vol.359 , pp. 754-768
    • GILBERT, S.D.1    STODDARD, C.D.2    WISE, S.J.3    BATEY, R.T.4
  • 35
    • 11444263264 scopus 로고    scopus 로고
    • Crystal structure of a phage Twort group I ribozyme-product complex
    • GOLDEN, B. L., KIM, H. & CHASE, E. (2005). Crystal structure of a phage Twort group I ribozyme-product complex. Nature Structural & Molecular Biology 12, 82-89.
    • (2005) Nature Structural & Molecular Biology , vol.12 , pp. 82-89
    • GOLDEN, B.L.1    KIM, H.2    CHASE, E.3
  • 37
    • 0028025386 scopus 로고
    • Interaction between the acceptor end of tRNA and the T box stimulates antitermination in the Bacillus subtilis tyrS gene: A new role for the discriminator base
    • GRUNDY, F. J., ROLLINS, S. M. & HENKIN, T. M. (1994). Interaction between the acceptor end of tRNA and the T box stimulates antitermination in the Bacillus subtilis tyrS gene: a new role for the discriminator base. Journal of Bacteriology 176, 4518-4526.
    • (1994) Journal of Bacteriology , vol.176 , pp. 4518-4526
    • GRUNDY, F.J.1    ROLLINS, S.M.2    HENKIN, T.M.3
  • 38
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • GUERRIER-TAKADA, C., GARDINER, K., MARSH, T., PACE, N. & ALTMAN, S. (1983). The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35, 849-857.
    • (1983) Cell , vol.35 , pp. 849-857
    • GUERRIER-TAKADA, C.1    GARDINER, K.2    MARSH, T.3    PACE, N.4    ALTMAN, S.5
  • 39
    • 8644229237 scopus 로고    scopus 로고
    • Structure of the Tetrahymena ribozyme: Base triple sandwich and metal ion at the active site
    • GUO, F., GOODING, A. R. & CECH, T. R. (2004). Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site. Molecular Cell 16, 351-362.
    • (2004) Molecular Cell , vol.16 , pp. 351-362
    • GUO, F.1    GOODING, A.R.2    CECH, T.R.3
  • 40
    • 33344461011 scopus 로고    scopus 로고
    • Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme
    • GUO, F., GOODING, A. R. & CECH, T. R. (2006). Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme. RNA 12, 387-395.
    • (2006) RNA , vol.12 , pp. 387-395
    • GUO, F.1    GOODING, A.R.2    CECH, T.R.3
  • 43
  • 44
    • 0037154092 scopus 로고    scopus 로고
    • Acyl-CoAs from coenzyme ribozymes
    • JADHAV, V. R. & YARUS, M. (2002). Acyl-CoAs from coenzyme ribozymes. Biochemistry 41, 723-729.
    • (2002) Biochemistry , vol.41 , pp. 723-729
    • JADHAV, V.R.1    YARUS, M.2
  • 45
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • JENISON, R. D., GILL, S. C., PARDI, A. & POLISKY, B. (1994). High-resolution molecular discrimination by RNA. Science 263, 1425-1429.
    • (1994) Science , vol.263 , pp. 1425-1429
    • JENISON, R.D.1    GILL, S.C.2    PARDI, A.3    POLISKY, B.4
  • 46
    • 0024443885 scopus 로고
    • Amplification, mutation and selection of catalytic RNA
    • JOYCE, G. F. (1989). Amplification, mutation and selection of catalytic RNA. Gene 82, 83-87.
    • (1989) Gene , vol.82 , pp. 83-87
    • JOYCE, G.F.1
  • 47
    • 33646080332 scopus 로고    scopus 로고
    • Progress towards understanding the origin of The RNA world
    • 3rd edn eds R. F. Gesteland, T. R. Cech and J. F. Atkins, pp, Cold Spring Harbor, NY: Cold Spring Harbor Press
    • JOYCE, G. F. & ORGEL, L. E. (2006). Progress towards understanding the origin of The RNA world. In RNA World, 3rd edn (eds R. F. Gesteland, T. R. Cech and J. F. Atkins), pp. 23-56. Cold Spring Harbor, NY: Cold Spring Harbor Press.
    • (2006) RNA World , pp. 23-56
    • JOYCE, G.F.1    ORGEL, L.E.2
  • 50
    • 6044275739 scopus 로고    scopus 로고
    • Basis for structural diversity in homologous RNAs
    • KRASILNIKOV, A. S., XIAO, Y., PAN, T. & MONDRAGON, A. (2004). Basis for structural diversity in homologous RNAs. Science 306, 104-107.
    • (2004) Science , vol.306 , pp. 104-107
    • KRASILNIKOV, A.S.1    XIAO, Y.2    PAN, T.3    MONDRAGON, A.4
  • 51
    • 0037434709 scopus 로고    scopus 로고
    • Crystal structure of the specificity domain of ribonuclease P
    • KRASILNIKOV, A. S., YANG, X., PAN, T. & MONDRAGON, A. (2003). Crystal structure of the specificity domain of ribonuclease P. Nature 421, 760-764.
    • (2003) Nature , vol.421 , pp. 760-764
    • KRASILNIKOV, A.S.1    YANG, X.2    PAN, T.3    MONDRAGON, A.4
  • 52
    • 0020417286 scopus 로고
    • Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
    • KRUGER, K., GRABOWSKI, P. J., ZAUG, A. J., SANDS, J., GOTTSCHLING, D. E. & CECH, T. R. (1982). Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell 31, 147-157.
    • (1982) Cell , vol.31 , pp. 147-157
    • KRUGER, K.1    GRABOWSKI, P.J.2    ZAUG, A.J.3    SANDS, J.4    GOTTSCHLING, D.E.5    CECH, T.R.6
  • 54
    • 0024359787 scopus 로고
    • Defining the inside and outside of a catalytic RNA molecule
    • LATHAM, J. A. & CECH, T. R. (1989). Defining the inside and outside of a catalytic RNA molecule. Science 245, 276-282.
    • (1989) Science , vol.245 , pp. 276-282
    • LATHAM, J.A.1    CECH, T.R.2
  • 55
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • LAU, N. C., LIM, L. P., WEINSTEIN, E. G. & BARTEL, D. P. (2001). An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294, 858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • LAU, N.C.1    LIM, L.P.2    WEINSTEIN, E.G.3    BARTEL, D.P.4
  • 56
    • 31544432270 scopus 로고    scopus 로고
    • Deoxyribozyme-based three-input logic gates and construction of a molecular full adder
    • LEDERMAN, H., MACDONALD, J., STEFANOVIC, D. & STOJANOVIC, M. N. (2006). Deoxyribozyme-based three-input logic gates and construction of a molecular full adder. Biochemistry 45, 1194-1199.
    • (2006) Biochemistry , vol.45 , pp. 1194-1199
    • LEDERMAN, H.1    MACDONALD, J.2    STEFANOVIC, D.3    STOJANOVIC, M.N.4
  • 57
    • 33646845815 scopus 로고    scopus 로고
    • Automated extraction and classification of RNA tertiary structure cyclic motifs
    • LEMIEUX, S. & MAJOR, F. (2006). Automated extraction and classification of RNA tertiary structure cyclic motifs. Nucleic Acids Research 34, 2340-2346.
    • (2006) Nucleic Acids Research , vol.34 , pp. 2340-2346
    • LEMIEUX, S.1    MAJOR, F.2
  • 60
    • 0842334528 scopus 로고    scopus 로고
    • Adenine riboswitches and gene activation by disruption of a transcription terminator
    • MANDAL, M. & BREAKER, R. R. (2004a). Adenine riboswitches and gene activation by disruption of a transcription terminator. Nature Structural & Molecular Biology 11, 29-35.
    • (2004) Nature Structural & Molecular Biology , vol.11 , pp. 29-35
    • MANDAL, M.1    BREAKER, R.R.2
  • 62
    • 5044234799 scopus 로고    scopus 로고
    • A glycine-dependent riboswitch that uses cooperative binding to control gene expression
    • MANDAL, M., LEE, M., BARRICK, J. E., WEINBERG, Z., EMILSSON, G. M., RUZZO, W. L. & BREAKER, R. R. (2004). A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306, 275-279.
    • (2004) Science , vol.306 , pp. 275-279
    • MANDAL, M.1    LEE, M.2    BARRICK, J.E.3    WEINBERG, Z.4    EMILSSON, G.M.5    RUZZO, W.L.6    BREAKER, R.R.7
  • 63
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • MATHEWS, D. H., SABINA, J., ZUKER, M. & TURNER, D. H. (1999). Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. Journal of Molecular Biology 288, 911-940.
    • (1999) Journal of Molecular Biology , vol.288 , pp. 911-940
    • MATHEWS, D.H.1    SABINA, J.2    ZUKER, M.3    TURNER, D.H.4
  • 64
    • 33744790273 scopus 로고    scopus 로고
    • Prediction of RNA secondary structure by free energy minimization
    • MATHEWS, D. H. & TURNER, D. H. (2006). Prediction of RNA secondary structure by free energy minimization. Current Opinion in Structural Biology 16, 270-278.
    • (2006) Current Opinion in Structural Biology , vol.16 , pp. 270-278
    • MATHEWS, D.H.1    TURNER, D.H.2
  • 66
    • 0035857392 scopus 로고    scopus 로고
    • Beyond the hydrophobic effect: Attractions involving heteroaromatic rings in aqueous solution
    • MCKAY, S. L., HAPTONSTALL, B. & GELLMAN, S. H. (2001). Beyond the hydrophobic effect: attractions involving heteroaromatic rings in aqueous solution. Journal of the American Chemical Society 123, 1244-1245.
    • (2001) Journal of the American Chemical Society , vol.123 , pp. 1244-1245
    • MCKAY, S.L.1    HAPTONSTALL, B.2    GELLMAN, S.H.3
  • 68
    • 33745628336 scopus 로고    scopus 로고
    • Structure of the S-adenosylmethionine riboswitch regulatory mRNA element
    • MONTANGE, R. K. & BATEY, R. T. (2006). Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature 441, 1172-1175.
    • (2006) Nature , vol.441 , pp. 1172-1175
    • MONTANGE, R.K.1    BATEY, R.T.2
  • 71
    • 0030968710 scopus 로고    scopus 로고
    • Mechanistic aspects of enzymatic catalysis: Lessons from comparison of RNA and protein enzymes
    • NARLIKAR, G. J. & HERSCHLAG, D. (1997). Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes. Annual Review of Biochemistry 66, 19-59.
    • (1997) Annual Review of Biochemistry , vol.66 , pp. 19-59
    • NARLIKAR, G.J.1    HERSCHLAG, D.2
  • 72
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • NISSEN, P., HANSEN, J., BAN, N., MOORE, P. B. & STEITZ, T. A. (2000). The structural basis of ribosome activity in peptide bond synthesis. Science 289, 920-930.
    • (2000) Science , vol.289 , pp. 920-930
    • NISSEN, P.1    HANSEN, J.2    BAN, N.3    MOORE, P.B.4    STEITZ, T.A.5
  • 73
    • 0034628673 scopus 로고    scopus 로고
    • The 1.3 A crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition
    • NIX, J., SUSSMAN, D. & WILSON, C. (2000). The 1.3 A crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition. Journal of Molecular Biology 296, 1235-1244.
    • (2000) Journal of Molecular Biology , vol.296 , pp. 1235-1244
    • NIX, J.1    SUSSMAN, D.2    WILSON, C.3
  • 75
  • 76
    • 0014369024 scopus 로고
    • Evolution of the genetic apparatus
    • ORGEL, L. E. (1968). Evolution of the genetic apparatus. Journal of Molecular Biology 38, 381-393.
    • (1968) Journal of Molecular Biology , vol.38 , pp. 381-393
    • ORGEL, L.E.1
  • 77
    • 0032563297 scopus 로고    scopus 로고
    • Folding intermediates of a self-splicing RNA: Mispairing of the catalytic core
    • PAN, J. & WOODSON, S. A. (1998). Folding intermediates of a self-splicing RNA: mispairing of the catalytic core. Journal of Molecular Biology 280, 597-609.
    • (1998) Journal of Molecular Biology , vol.280 , pp. 597-609
    • PAN, J.1    WOODSON, S.A.2
  • 78
    • 27944493648 scopus 로고    scopus 로고
    • Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes
    • PENCHOVSKY, R. & BREAKER, R. R. (2005). Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. Nature Biotechnology 23, 1424-1433.
    • (2005) Nature Biotechnology , vol.23 , pp. 1424-1433
    • PENCHOVSKY, R.1    BREAKER, R.R.2
  • 80
  • 81
    • 0035848837 scopus 로고    scopus 로고
    • Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
    • RUPERT, P. B. & FERRE-D'AMARE, A. R. (2001). Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature 410, 780-786.
    • (2001) Nature , vol.410 , pp. 780-786
    • RUPERT, P.B.1    FERRE-D'AMARE, A.R.2
  • 82
    • 2942729627 scopus 로고    scopus 로고
    • Crystallization of the hairpin ribozyme: Illustrative protocols
    • RUPERT, P. B. & FERRE-D'AMARE, A. R. (2004). Crystallization of the hairpin ribozyme: illustrative protocols. Methods in Molecular Biology 252, 303-311.
    • (2004) Methods in Molecular Biology , vol.252 , pp. 303-311
    • RUPERT, P.B.1    FERRE-D'AMARE, A.R.2
  • 84
    • 0035950132 scopus 로고    scopus 로고
    • Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria
    • SCHLUNZEN, F., ZARIVACH, R., HARMS, J., BASHAN, A., TOCILJ, A., ALBRECHT, R., YONATH, A. & FRANCESCHI, F. (2001). Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria. Nature 413, 814-821.
    • (2001) Nature , vol.413 , pp. 814-821
    • SCHLUNZEN, F.1    ZARIVACH, R.2    HARMS, J.3    BASHAN, A.4    TOCILJ, A.5    ALBRECHT, R.6    YONATH, A.7    FRANCESCHI, F.8
  • 85
    • 0034698298 scopus 로고    scopus 로고
    • One sequence, two ribozymes: Implications for the emergence of new ribozyme folds
    • SCHULTES, E. A. & BARTEL, D. P. (2000). One sequence, two ribozymes: implications for the emergence of new ribozyme folds. Science 289, 448-452.
    • (2000) Science , vol.289 , pp. 448-452
    • SCHULTES, E.A.1    BARTEL, D.P.2
  • 86
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • SCOTT, W. G., FINCH, J. T. & KLUG, A. (1995). The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell 81, 991-1002.
    • (1995) Cell , vol.81 , pp. 991-1002
    • SCOTT, W.G.1    FINCH, J.T.2    KLUG, A.3
  • 88
    • 33745635350 scopus 로고    scopus 로고
    • Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
    • SERGANOV, A., POLONSKAIA, A., PHAN, A. T., BREAKER, R. R. & PATEL, D. J. (2006). Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature 441, 1167-1171.
    • (2006) Nature , vol.441 , pp. 1167-1171
    • SERGANOV, A.1    POLONSKAIA, A.2    PHAN, A.T.3    BREAKER, R.R.4    PATEL, D.J.5
  • 90
    • 0028910590 scopus 로고
    • The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus
    • SHEN, L. X. & TINOCO JR., I. (1995). The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus. Journal of Molecular Biology 247, 963-978.
    • (1995) Journal of Molecular Biology , vol.247 , pp. 963-978
    • SHEN, L.X.1    TINOCO JR., I.2
  • 91
    • 0033862354 scopus 로고    scopus 로고
    • The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: A classic structure revisited
    • SHI, H. & MOORE, P. B. (2000). The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited. RNA 6, 1091-1105.
    • (2000) RNA , vol.6 , pp. 1091-1105
    • SHI, H.1    MOORE, P.B.2
  • 93
    • 0038136962 scopus 로고    scopus 로고
    • Metabolite-binding RNA domains are present in the genes of eukaryotes
    • SUDARSAN, N., BARRICK, J. E. & BREAKER, R. R. (2003). Metabolite-binding RNA domains are present in the genes of eukaryotes. RNA 9, 644-647.
    • (2003) RNA , vol.9 , pp. 644-647
    • SUDARSAN, N.1    BARRICK, J.E.2    BREAKER, R.R.3
  • 94
    • 0033988166 scopus 로고    scopus 로고
    • The structural basis for molecular recognition by the vitamin B 12 RNA aptamer
    • SUSSMAN, D., NIX, J. C. & WILSON, C. (2000). The structural basis for molecular recognition by the vitamin B 12 RNA aptamer. Nature Structural Biology 7, 53-57.
    • (2000) Nature Structural Biology , vol.7 , pp. 53-57
    • SUSSMAN, D.1    NIX, J.C.2    WILSON, C.3
  • 95
    • 0030963855 scopus 로고    scopus 로고
    • RNA-catalysed carbon-carbon bond formation
    • TARASOW, T. M., TARASOW, S. L. & EATON, B. E. (1997). RNA-catalysed carbon-carbon bond formation. Nature 389, 54-57.
    • (1997) Nature , vol.389 , pp. 54-57
    • TARASOW, T.M.1    TARASOW, S.L.2    EATON, B.E.3
  • 96
    • 14644435818 scopus 로고    scopus 로고
    • Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function
    • THEIMER, C. A., BLOIS, C. A. & FEIGON, J. (2005). Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function. Molecular Cell 17, 671-682.
    • (2005) Molecular Cell , vol.17 , pp. 671-682
    • THEIMER, C.A.1    BLOIS, C.A.2    FEIGON, J.3
  • 97
    • 33744469562 scopus 로고    scopus 로고
    • Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand
    • THORE, S., LEIBUNDGUT, M. & BAN, N. (2006). Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand. Science 312, 1208-1211.
    • (2006) Science , vol.312 , pp. 1208-1211
    • THORE, S.1    LEIBUNDGUT, M.2    BAN, N.3
  • 101
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • TUERK, C. & GOLD, L. (1990). Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • TUERK, C.1    GOLD, L.2
  • 102
    • 0002635816 scopus 로고    scopus 로고
    • Conformational changes
    • eds V. A. Bloomfield, D. M. Crothers and I. Tinoco, Jr, pp, Sausalito, CA: University Science Books
    • TURNER, D. H. (2000). Conformational changes. In Nucleic Acids: Structure, Properties, and Functions (eds V. A. Bloomfield, D. M. Crothers and I. Tinoco, Jr), pp. 259-334. Sausalito, CA: University Science Books.
    • (2000) Nucleic Acids: Structure, Properties, and Functions , pp. 259-334
    • TURNER, D.H.1
  • 103
    • 0001409790 scopus 로고
    • Thermodynamic considerations for evolution by RNA
    • eds R. F. Gesteland and J. F. Atkins, pp, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • TURNER, D. H. & BEVILACQUA, P. C. (1993). Thermodynamic considerations for evolution by RNA. In The RNA World (eds R. F. Gesteland and J. F. Atkins), pp. 447-464. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • (1993) The RNA World , pp. 447-464
    • TURNER, D.H.1    BEVILACQUA, P.C.2
  • 105
    • 26444620938 scopus 로고    scopus 로고
    • The kinetics of ligand binding by an adenine-sensing riboswitch
    • WICKISER, J. K., CHEAH, M. T., BREAKER, R. R. & CROTHERS, D. M. (2005a). The kinetics of ligand binding by an adenine-sensing riboswitch. Biochemistry 44, 13404-13414.
    • (2005) Biochemistry , vol.44 , pp. 13404-13414
    • WICKISER, J.K.1    CHEAH, M.T.2    BREAKER, R.R.3    CROTHERS, D.M.4
  • 106
    • 15944382675 scopus 로고    scopus 로고
    • The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
    • WICKISER, J. K., WINKLER, W. C., BREAKER, R. R. & CROTHERS, D. M. (2005b). The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Molecular Cell 18, 49-60.
    • (2005) Molecular Cell , vol.18 , pp. 49-60
    • WICKISER, J.K.1    WINKLER, W.C.2    BREAKER, R.R.3    CROTHERS, D.M.4
  • 107
    • 0037206833 scopus 로고    scopus 로고
    • Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
    • WINKLER, W., NAHVI, A. & BREAKER, R. R. (2002). Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419, 952-956.
    • (2002) Nature , vol.419 , pp. 952-956
    • WINKLER, W.1    NAHVI, A.2    BREAKER, R.R.3
  • 108
    • 27744519876 scopus 로고    scopus 로고
    • Riboswitches and the role of noncoding RNAs in bacterial metabolic control
    • WINKLER, W. C. (2005). Riboswitches and the role of noncoding RNAs in bacterial metabolic control. Current Opinion in Chemical Biology 9, 594-602.
    • (2005) Current Opinion in Chemical Biology , vol.9 , pp. 594-602
    • WINKLER, W.C.1
  • 109
    • 0041597294 scopus 로고
    • The evolution of the genetic code
    • New York: Harper & Row
    • WOESE, C. (1967). The evolution of the genetic code. In The Genetic Code, pp. 179-195. New York: Harper & Row.
    • (1967) The Genetic Code , pp. 179-195
    • WOESE, C.1
  • 111
    • 0030752211 scopus 로고    scopus 로고
    • Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA
    • ZIMMERMANN, G. R., JENISON, R. D., WICK, C. L., SIMORRE, J. P. & PARDI, A. (1997). Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA. Nature Structural Biology 4, 644-649.
    • (1997) Nature Structural Biology , vol.4 , pp. 644-649
    • ZIMMERMANN, G.R.1    JENISON, R.D.2    WICK, C.L.3    SIMORRE, J.P.4    PARDI, A.5
  • 112
    • 0034032599 scopus 로고    scopus 로고
    • Molecular interactions and metal binding in the theophylline-binding core of an RNA aptamer
    • ZIMMERMANN, G. R., WICK, C. L., SHIELDS, T. P., JENISON, R. D. & PARDI, A. (2000). Molecular interactions and metal binding in the theophylline-binding core of an RNA aptamer. RNA 6, 659-667.
    • (2000) RNA , vol.6 , pp. 659-667
    • ZIMMERMANN, G.R.1    WICK, C.L.2    SHIELDS, T.P.3    JENISON, R.D.4    PARDI, A.5


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