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Volumn 44, Issue 10, 2007, Pages 1002-1010

Comparison of loline alkaloid gene clusters across fungal endophytes: Predicting the co-regulatory sequence motifs and the evolutionary history

Author keywords

Insecticidal alkaloids; Interspecific hybrids; Mutualism; PhyloCon; Secondary metabolism

Indexed keywords

ALKALOID; LOLINE; TRANSCRIPTION FACTOR;

EID: 34548267218     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2007.04.003     Document Type: Article
Times cited : (26)

References (33)
  • 1
    • 85032069466 scopus 로고    scopus 로고
    • A simple method for extraction of fungal genomic DNA
    • Al-Samarrai T.H., and Schmid J. A simple method for extraction of fungal genomic DNA. Lett. Appl. Microbiol. 30 (2000) 53-56
    • (2000) Lett. Appl. Microbiol. , vol.30 , pp. 53-56
    • Al-Samarrai, T.H.1    Schmid, J.2
  • 3
    • 0034636485 scopus 로고    scopus 로고
    • The rise of the hybrid fungi
    • Brasier C. The rise of the hybrid fungi. Nature 405 (2000) 134-135
    • (2000) Nature , vol.405 , pp. 134-135
    • Brasier, C.1
  • 4
    • 0031417176 scopus 로고    scopus 로고
    • Bioprotective alkaloids of grass-fungal endophyte symbioses
    • Bush L.P., Wilkinson H.H., and Schardl C.L. Bioprotective alkaloids of grass-fungal endophyte symbioses. Plant Physiol. 114 (1997) 1-7
    • (1997) Plant Physiol. , vol.114 , pp. 1-7
    • Bush, L.P.1    Wilkinson, H.H.2    Schardl, C.L.3
  • 5
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17 (2000) 540-552
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 6
    • 0028271865 scopus 로고
    • Identification of potential target genes for Adr1p through characterization of essential nucleotides in UAS1
    • Cheng C., Kacherovsky N., Dombek K.M., Camier S., Thukral S.K., Rhim E., and Young E.T. Identification of potential target genes for Adr1p through characterization of essential nucleotides in UAS1. Mol. Cell. Biol. 14 (1994) 3842-3852
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 3842-3852
    • Cheng, C.1    Kacherovsky, N.2    Dombek, K.M.3    Camier, S.4    Thukral, S.K.5    Rhim, E.6    Young, E.T.7
  • 7
    • 0036792868 scopus 로고    scopus 로고
    • Evolutionary origins and ecological consequences of endophyte symbiosis with grasses
    • Clay K., and Schardl C.L. Evolutionary origins and ecological consequences of endophyte symbiosis with grasses. Am. Nat. 160 (2002) S99-S127
    • (2002) Am. Nat. , vol.160
    • Clay, K.1    Schardl, C.L.2
  • 8
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16 (1988) 10881-10890
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 10
    • 0026670518 scopus 로고
    • Single amino acid substitutions alter helix-loop-helix protein specificity for bases flanking the core CANNTG motif
    • Fisher F., and Goding C.R. Single amino acid substitutions alter helix-loop-helix protein specificity for bases flanking the core CANNTG motif. EMBO J. 11 (1992) 4103-4109
    • (1992) EMBO J. , vol.11 , pp. 4103-4109
    • Fisher, F.1    Goding, C.R.2
  • 11
    • 0025082117 scopus 로고
    • nit-2, the major positive-acting nitrogen regulatory gene of Neurospora crassa, encodes a sequence-specific DNA-binding protein
    • Fu Y.H., and Marzluf G.A. nit-2, the major positive-acting nitrogen regulatory gene of Neurospora crassa, encodes a sequence-specific DNA-binding protein. Proc. Natl. Acad. Sci. USA 87 (1990) 5331-5335
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 5331-5335
    • Fu, Y.H.1    Marzluf, G.A.2
  • 12
    • 0036890388 scopus 로고    scopus 로고
    • Natural selection promotes the conservation of linkage of co-expressed genes
    • Hurst L.D., Williams E.J.B., and Pál C. Natural selection promotes the conservation of linkage of co-expressed genes. Trends Genet. 18 (2002) 604-606
    • (2002) Trends Genet. , vol.18 , pp. 604-606
    • Hurst, L.D.1    Williams, E.J.B.2    Pál, C.3
  • 13
    • 34548281673 scopus 로고    scopus 로고
    • Kutil, B.L., 2006. The evolution of LOL, the secondary metabolite gene cluster for insecticidal loline alkaloids in fungal endophytes of grasses. Ph.D. Dissertation. Texas A&M University, College Station, Texas.
  • 14
    • 0344873609 scopus 로고    scopus 로고
    • Contig assembly and microsynteny analysis using a bacterial artificial chromosome library for Epichloë festucae, a mutualistic fungal endophyte of grasses
    • Kutil B.L., Liu G., Vrebalov J., and Wilkinson H.H. Contig assembly and microsynteny analysis using a bacterial artificial chromosome library for Epichloë festucae, a mutualistic fungal endophyte of grasses. Fungal Genet. Biol. 41 (2004) 23-32
    • (2004) Fungal Genet. Biol. , vol.41 , pp. 23-32
    • Kutil, B.L.1    Liu, G.2    Vrebalov, J.3    Wilkinson, H.H.4
  • 15
    • 0032049544 scopus 로고    scopus 로고
    • Analysis of two transcription activation elements in the promoter of the developmentally regulated con-10 gene of Neurospora crassa
    • Lee K., and Ebbole D.J. Analysis of two transcription activation elements in the promoter of the developmentally regulated con-10 gene of Neurospora crassa. Fungal Genet. Biol. 23 (1998) 259-268
    • (1998) Fungal Genet. Biol. , vol.23 , pp. 259-268
    • Lee, K.1    Ebbole, D.J.2
  • 16
    • 0034097319 scopus 로고    scopus 로고
    • Different levels of protective alkaloids in grasses with stroma-forming and seed-transmitted Epichloë/Neotyphodium endophytes
    • Leuchtmann A., Schmidt D., and Bush L.P. Different levels of protective alkaloids in grasses with stroma-forming and seed-transmitted Epichloë/Neotyphodium endophytes. J. Chem. Ecol. 26 (2000) 1025-1036
    • (2000) J. Chem. Ecol. , vol.26 , pp. 1025-1036
    • Leuchtmann, A.1    Schmidt, D.2    Bush, L.P.3
  • 17
    • 2542498112 scopus 로고    scopus 로고
    • Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses
    • Moon C.D., Craven K.D., Leuchtmann A., Clement S.L., and Schardl C.L. Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses. Mol. Ecol. 13 (2004) 1455-1467
    • (2004) Mol. Ecol. , vol.13 , pp. 1455-1467
    • Moon, C.D.1    Craven, K.D.2    Leuchtmann, A.3    Clement, S.L.4    Schardl, C.L.5
  • 18
    • 0035570583 scopus 로고    scopus 로고
    • Epichloë festucae and related mutualistic symbionts of grasses
    • Schardl C.L. Epichloë festucae and related mutualistic symbionts of grasses. Fung. Genet. Biol. 33 (2001) 59-82
    • (2001) Fung. Genet. Biol. , vol.33 , pp. 59-82
    • Schardl, C.L.1
  • 19
    • 0242540589 scopus 로고    scopus 로고
    • Interspecific hybridization in plant-associated fungi and oomycetes: a review
    • Schardl C.L., and Craven K.D. Interspecific hybridization in plant-associated fungi and oomycetes: a review. Mol. Ecol. 12 (2003) 2861-2873
    • (2003) Mol. Ecol. , vol.12 , pp. 2861-2873
    • Schardl, C.L.1    Craven, K.D.2
  • 20
    • 0028106363 scopus 로고
    • The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae CTT1 gene
    • Schüller C., Brewster J.L., Alexander M.R., Gustin M.C., and Ruis H. The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae CTT1 gene. EMBO J. 13 (1994) 4382-4389
    • (1994) EMBO J. , vol.13 , pp. 4382-4389
    • Schüller, C.1    Brewster, J.L.2    Alexander, M.R.3    Gustin, M.C.4    Ruis, H.5
  • 22
    • 34548252436 scopus 로고    scopus 로고
    • Smit, A., Hubley, R., Green, P., 1996. RepeatMasker Open-3.0. .
  • 23
    • 17444394406 scopus 로고    scopus 로고
    • Gene clusters for insecticidal loline alkaloids in the grass-endophytic fungus Neotyphodium uncinatum
    • Spiering M.J., Moon C.D., Wilkinson H.H., and Schardl C.L. Gene clusters for insecticidal loline alkaloids in the grass-endophytic fungus Neotyphodium uncinatum. Genetics 169 (2005) 1403-1414
    • (2005) Genetics , vol.169 , pp. 1403-1414
    • Spiering, M.J.1    Moon, C.D.2    Wilkinson, H.H.3    Schardl, C.L.4
  • 24
    • 0036346292 scopus 로고    scopus 로고
    • Expressed sequence tags and genes associated with loline alkaloid expression by the fungal endophyte Neotyphodium uncinatum
    • Spiering M.J., Wilkinson H.H., Blankenship J.D., and Schardl C.L. Expressed sequence tags and genes associated with loline alkaloid expression by the fungal endophyte Neotyphodium uncinatum. Fung. Genet. Biol. 36 (2002) 242-254
    • (2002) Fung. Genet. Biol. , vol.36 , pp. 242-254
    • Spiering, M.J.1    Wilkinson, H.H.2    Blankenship, J.D.3    Schardl, C.L.4
  • 26
    • 34548278450 scopus 로고    scopus 로고
    • *: Phylogenetic Analysis Using Parsimony (*and other Methods). Sinauer Associates, Sunderland, MA, 2002.
  • 27
    • 0027968068 scopus 로고
    • Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 29
    • 0344906814 scopus 로고    scopus 로고
    • Combining phylogenetic data with co-regulated genes to identify regulatory motifs
    • Wang T.A., and Stormo G.D. Combining phylogenetic data with co-regulated genes to identify regulatory motifs. Bioinformatics 19 (2003) 2369-2380
    • (2003) Bioinformatics , vol.19 , pp. 2369-2380
    • Wang, T.A.1    Stormo, G.D.2
  • 31
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: a database on transcription factors and their DNA binding sites
    • Wingender E., Dietze P., Karas H., and Knuppel R. TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Res. 24 (1996) 238-241
    • (1996) Nucleic Acids Res. , vol.24 , pp. 238-241
    • Wingender, E.1    Dietze, P.2    Karas, H.3    Knuppel, R.4
  • 32
    • 22844450779 scopus 로고    scopus 로고
    • Birth of metabolic gene cluster in yeast by adaptive gene relocation
    • Wong S., and Wolfe K.H. Birth of metabolic gene cluster in yeast by adaptive gene relocation. Nat. Genet. 37 (2005) 777-782
    • (2005) Nat. Genet. , vol.37 , pp. 777-782
    • Wong, S.1    Wolfe, K.H.2
  • 33
    • 23744502426 scopus 로고    scopus 로고
    • Molecular cloning and genetic analysis of a symbiosis-expressed gene cluster for lolitrem biosynthesis from a mutualistic endophyte of perennial ryegrass
    • Young C., Bryant M.K., Christensen M.J., Tapper B.A., Bryan G.T., and Scott B. Molecular cloning and genetic analysis of a symbiosis-expressed gene cluster for lolitrem biosynthesis from a mutualistic endophyte of perennial ryegrass. Mol. Genet. Genomics 274 (2005) 13-29
    • (2005) Mol. Genet. Genomics , vol.274 , pp. 13-29
    • Young, C.1    Bryant, M.K.2    Christensen, M.J.3    Tapper, B.A.4    Bryan, G.T.5    Scott, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.