Molecular characterization of the largest and smallest genome segments, S1 and S12, of Rice gall dwarf virus

Virus Genes

Volumn 35, Issue 3, 2007, Pages 815-823

  Zhang, Heng Mu ^a   Yang, Jian ^a   Xin, Xing ^a   Chen, Jian Ping ^a   Adams, Michael J ^b  

^a INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

^b ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

Phylogeny; Phytoreovirus; RdRp; Reoviridae; Rice gall dwarf virus; Sequence analysis

Indexed keywords

AMINO ACID; CORE PROTEIN; RNA DIRECTED RNA POLYMERASE;

AMINO TERMINAL SEQUENCE; ARTICLE; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT VIRUS; PRIORITY JOURNAL; REOVIRUS; RICE; RICE GALL DWARF VIRUS; RNA BINDING; ROTAVIRUS; TUMOR VIRUS; VIRUS; VIRUS CHARACTERIZATION; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION;

BASE SEQUENCE; CHINA; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; ORYZA SATIVA; PHYLOGENY; PLANT DISEASES; REOVIRIDAE; RNA REPLICASE; RNA-BINDING PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL PROTEINS;

ORTHOREOVIRUS; PHYTOREOVIRUS; REOVIRIDAE; RICE DWARF VIRUS; RICE GALL DWARF VIRUS; ROTAVIRUS; WOUND TUMOR VIRUS;

EID: 34548241789     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-007-0142-8     Document Type: Article

References (45)

1. M. Putta, D. Chettanachit, T. Morinaka, D. Parejarearn, Int. Rice. Res. Newsl. 5(3), 10 (1980)
2. T. Omura, H. Inoue, T. Morinaka, Y. Saito, D. Chettanachit, M. Putta, A. Parejarearn, S. Disthaporn, Plant. Dis. 64, 795 (1980)
3. C.A. Ong, T. Omura, Int. Rice Res. Newsl. 7(2), 7 (1982)
4. H.Z. Fan, S.G. Zhang, X.Z. He, S.D. Xie, C.Z. Liu, L.G. Zhou, D. Zhu, X.R. Liu, Acta Phytopath. Sin. 13, 1 (1983)
5. H. Inoue, T. Omura, Plant. Dis. 66, 57 (1982)
6. T. Morinaka, H. Inoue, T. Omura, Y. Saito, M. Putta, D. Chettanachit, A. Parejarearn, S. Disthaporn, Plant. Dis. 66, 703 (1982)
7. T. Hibi, T. Omura, Y. Saito, J. Gen. Virol. 65, 1585 (1984)
8. G. Boccardo, R.G. Milne, S. Disthaporn, D. Chettanachit, M. Putta, Intervirology 23, 167 (1985)
9. T. Omura, Y. Minove, M. Matsuoka, Y. Nozu, T. Tsuchizaki, Y. Saito, J. Gen. Virol. 66, 811 (1985)
10. W. Maruyama, K. Ichimi, Y. Fukui, J. Yan, Y. Zhu, H. Kamiunten, T. Omura, Arch. Virol. 142, 1 (1997)
11. Y. Takahashi, M. Tomiyama, H. Hibino, T. Omura, J. Gen. Virol. 75, 269 (1994)
12. N. Miyazaki, K. Hagiwara, H. Naitow, T. Higashi, R.H. Cheng, T. Tsukihara, A. Nakagawa, T. Omura, J. Mol. Biol. 345, 229 (2005)
13. T. Omura, H. Hibino, H. Inoue, T. Tsuchizaki, J. Gen. Virol. 66, 2581 (1985)
14. J. Yan, M. Tomaru, A. Takahashi, I. Kimura, H. Hibino, T. Omura, Virology 224, 539 (1996)
15. T. Omura, J. Yan, Adv. Virus Res. 54, 15 (1999)
16. M. Yokoyama, Y. Nozu, J. Hashimoto, T. Omura, J. Gen. Virol. 65, 533 (1984)
17. T. Omura, Sem. Virol. 6, 97 (1995)
18. S. Zhu, F. Gao, X. Cao, M. Chen, G Ye, C. Wei, Y. Li, Plant Physiol. 139, 1935 (2005)
19. T. Wei, T. Shimizu, K. Hagiwara, A. Kikuchi, Y. Moriyasu, N. Suzuki, H. Chen, T. Omura, J. Gen. Virol. 87, 429 (2006)
20. T. Wei, A. Kikuchi, N. Suzuki, T. Shimizu, K. Hagiwara, H. Chen, T. Omura, Arch. Virol. 151, 1701 (2006)
21. H. Koganezawa, H. Hibino, F. Motoyoshi, H. Kato, H. Noda, K. Ishikawa, T. Omura, J. Gen. Virol. 71, 1861 (1990)
22. H. Noda, K. Ishikawa, H. Hibino, H. Kato, T. Omura, J. Gen. Virol. 72, 2837 (1991)
23. Y. Moriyasu, K. Ishikawa, A. Kikuchi, S. Imanishi, S. Tomita, K. Akutsu, T. Omura, Virus. Genes. 20, 237 (2000)
24. K. Ichimi, A. Kikuchi, Y. Moriyasu, X.B. Zhong, K. Hagiwara, H. Kamiunten, T. Omura, JARQ. 36, 83 (2002)
25. I. Uyeda, L. Bong-Choon, Y. Ando, in Methods in molecular biology, vol 81. Plant virology protocols: from virus isolation to transgenic resistance, ed. by G.D. Foster, S.C. Taylor (Humana Press, Totowa, 1998), p. 65
26. J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular cloning: a laboratory manual. (Cold Spring Harbor Laboratory Press, NewYork, 1989)
27. H.M. Zhang, J.P. Chen, J.L. Lei, M.J. Adams, Eur. J. Plant. Pathol. 107, 563 (2001)
28. H.M. Zhang, J.P. Chen, M.J. Adams, Arch. Virol. 146, 2331 (2001)
29. S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, D.J. Lipman, Nucleic Acids Res. 25, 3389 (1997)
30. J.D. Thompson, D.G. Higgins, T.J. Gibson, Nucleic Acids Res. 22, 4673 (1994)
31. F. Corpet, Nucleic Acids. Res. 16, 10881 (1988)
32. N. Saitou, M. Nei, Mol. Biol. Evol. 4, 406 (1987)
33. S. Kumar, K. Tamura, M. Nei, Briefings Bioinf. 5, 150 (2004)
34. J.V. Anzola, Z. Xu, T. Asamizu, D.L. Nuss, Proc. Natl. Acad. Sci. USA 84, 8301 (1987)
35. N. Suzuki, Sem. Virol. 6, 89 (1995)
36. N. Nakashima, M. Koizumi, H. Watanabe, H. Noda, J. Gen. Virol. 77, 139 (1996)
37. Y.Z. Tao, D.L. Farsetta, M.L. Nibert, S.C. Harrison, Cell 111, 733 (2002)
38. J.L. Hansen, A.M. Long, S.C. Schultz, Structure 5, 1109 (1997)
39. E.K. O'Reilly, C.C. Kao, Virology. 252, 287 (1998)
40. D.R. Black, C.A. Knight, J. Virol. 6, 194 (1970)
41. T. Kodama, N. Suzuki, Ann. Phytopath. Soc. Japan 39, 251 (1973)
42. D.L. Nuss, A.J. Peterson, J. Virol. 34, 532 (1980)
43. N. Suzuki, M. Sugawara, T. Kusano, H. Mori, Y. Matsuura, Virology 202, 41 (1994)
44. H. Xu, Y. Li, Z.J. Mao, Y.Y. Li, Z.J Wu, L. Qu, C.C. An, X.T. Ming, J. Schiemann, R. Casper, Z.L. Chen, Virology 240, 267 (1998)
45. P.P.C. Mertens, M. Arella, H. Attoui, S. Bellonik, M. Bergoin, G. Boccardo, T.F. Booth, W. Chiu, J.M. Diprose, R. Duncan, in Virus taxonomy: Seventh Report of the International Committee for the taxonomy of viruses, ed. by M.H.V. Van Regenmortel, C.M. Fauquet, D.H.L. Bishop, C.H. Calisher, E.B. Carsten, M.K. Estes, S.M. Lemon, J. Maniloff, M.A. Mayo, D.J. McGeoch, C.R. Pringle, R.B. Wickner (Academic Press, New York, 2000), p. 395