Toward real-time image guided neurosurgery using distributed and grid computing

Proceedings of the 2006 ACM/IEEE Conference on Supercomputing, SC'06

Volumn , Issue , 2006, Pages

  Chrisochoides, Nikos ^a   Fedorov, Andriy ^a   Kot, Andriy ^a   Archip, Neculai ^b   Black, Peter ^b   Clatz, Olivier ^b   Golby, Alexandra ^b   Kikinis, Ron ^b   Warfield, Simon K ^b  

^a The College of William and Mary   (United States)

^b BRIGHAM AND WOMEN S HOSPITAL   (United States)

Author keywords

Distributed computing; Grid computing; Image registration; Medical imaging

Indexed keywords

BRAIN VOLUME; IMAGE GUIDED NEUROSURGERY (IGNS); PRE-OPERATIVE DATA;

BRAIN; DECISION MAKING; GRID COMPUTING; IMAGE REGISTRATION; MAGNETIC RESONANCE IMAGING; MEDICAL IMAGING; NEUROSURGERY;

ONCOLOGY;

EID: 34548236467     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1188455.1188536     Document Type: Conference Paper

References (37)

1. ABOU-RJEILI, A., AND KARYPIS, G. 2006. Multilevel algorithms for partitioning power-law graphs. In IEEE International Parallel and Distributed Processing Symposiu.
2. AMERICAN CANCER SOCIETY, 2005. Cancer facts and figures: 2005. http://www.cancer.org/docroot/STT/stt_0_2005.asp?sitearea= STT\&level=1, accessed 16 Feb 2006.
3. APACHE SOFTWARE FOUNDATION, 2006. Apache axis project, http://ws.apache.org/axis/, accessed 23 April 2006.
4. ARCHIP, N., FEDOROV, A., LLOYD, B., CHRISO-CHOIDES, N., GOLBY, A., BLACK, P. M., AND WARFIELD, S. K. 2006. Integration of patient specific modeling and advanced image processing techniques for image guided neurosurgery. In Proceedings of SPIE 6141 Medical Imaging 2006: Visualization, Image-Guided Procedures, and Display, K. Cleary and R. G. Jr., Eds., vol. 61411E.
5. ARGONNE NATIONAL LABORATORY, 2005. PETSc: Portable, extensible toolkit for scientific computation. v.2.3.0, http://www-imix.mcs.anl.gov/petsc/petsc-2/, Accessed 16 Feb, 2006.
6. BARKER, K., CHERNIKOV, A., CHRISOCHOIDES, N., AND PINGALI, K. 2004. A load balancing framework for adaptive and asynchronous applications. IEEE Transactions on Parallel and Distributed Systems 15, 2 (Feb.), 183-192.
7. BASERMANN, A., CLINCKEMAILLIE, J., COUPEZ, T., FINGBERG, J., DIGONNET, H., DUCLOUX, R., GRATIEN, J., HARTMANN, U., LONSDALE, G., MAERTEN, B., ROOSE, D., AND WALSHAW, C. 2000. Dynamic load-balancing of finite element applications with the drama library. Applied Mathematical Modeling 25, 83-98.
8. BELGUELIN, A., DONGARRA, J., GEIST, A., MANCHEK, R., OTTO, S., AND WALPORE, J. 1993. Pvm: Experiences, current status, and future direction. In Supercomputing '93 Proceedings, 765-766.
9. BIERLING, M. 1988. Displacement estimation by hierarchical block matching. In Proceedings of SPIE Visual Communication and Image Processing, vol. 1001, 942-951.
10. BLACK, P. 1998. Management of malignant glioma: role of surgery in relation to multimodality therapy. Journal of Neurovirology 4, 2, 227-236.
11. BLUMOFE, R., JOERG, C., KUSZMAUL, B., LEISERSON, C., RANDALL, K., AND ZHOU, Y. 1995. Cilk: An efficient multithreaded runtime system. In Proceedings of the 5th Symposium on Principles and Practice of Parallel Programming, 55-69.
12. CHAKRAVORTY, S., AND KALÉ, L. 2004. A fault tolerant protocol for massively parallel systems. In Proceedings of the 18th International Parallel and Distributed Processing Symposium.
13. CHRISOCHOIDES, N. 2005. Numerical Solution of Partial Differential Equations on Parallel Computers. No. 51 in Lecture Notes in Computational Science and Enginering. Springer-Verlag, December, ch. Parallel Mesh Generation, 237-264.
14. CLATZ, O., DELINGETTE, H., TALOS, I. F., GOLBY, A. J., KIKINIS, R., JOLESZ, F. A., AYACHE, N., AND WARFIELD, S. K. 2005. Robust non-rigid registration to capture brain shift from intra-operative MRI. IEEE Transactions on Medical Imaging 24, 11, 1417-1427.
15. COLLEGE OF WILLIAM&MARY, 2006. SciClone Cluster Project. http://www.compsci.wm.edu/SciClone/, accessed 23 April 2006.
16. DECKER, T. 2000. Virtual data space - load balancing for irregular applications. Parallel Computing 26, 1825-1860.
17. DEVINE, K., HENDRICKSON, B., BOMAN, E., JOHN, M. S., AND VAUGHAN, C. 2000. Design of dynamic load-balancing tools for parallel applications. In Proc. of the Int. Conf. on Supercomputing.
18. ELNOZAHY, E. N. M., ALVISI, L., WANG, Y.-M., AND JOHNSON, D. B. 2002. A survey of rollback-recovery protocols in message-passing systems. ACM Computing Surveys 34, 3, 375-408.
19. FAGG, G. E., AND DONGARRA, J. 2000. FT-MPI: Fault tolerant MPI, supporting dynamic applications in a dynamic world. In Proceedings of the 7th European PVM/MPI Users' Group Meeting on Recent Advances in Parallel Virtual Machine and Message Passing Interface, Springer-Verlag, 346-353.
20. FAIK, J. 2005. A Model for Resource-Aware Load Balancing on Heterogeneous and Non-Dedicated Clusters. PhD thesis, Rensselaer Polytechnic Institute, Troy.
21. FEDOROV, A., CHRISOCHOIDES, N., KIKINIS, R., AND WARFIELD, S. K. 2006. An evaluation of three approaches to tetrahedral mesh generation for deformable registration of MR images. In Proceedings of IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2006), 658-661.
22. FERRANT, M. 2001. Physics-based Deformable Modeling of Volumes and Surfaces for Medical Image Registration, Segmentation and Visualization. PhD thesis, Universite Catholique de Louvain.
23. FRIEDMAN, R., GOLDIN, M., ITZKOVITZ, A., AND SCHUSTER., A. 1997. Millipede: Easy parallel programming in available distributed environments. Software-Practice and Experience 27, 8 (August), 929-965.
24. GOLBY, A. J., POLDRACK, R. A., ILLES, J., CHEN, D., DESMOND, J. E., AND GABRIELI, J. D. 2002. Memory lateralization in medial temporal lobe epilepsy assessed by functional MRL Epilepsia 43, 8, 855-863.
25. INTERNET2 CONSORTIUM, 2006. Internet2 home page. http://www.internet2.edu/, accessed 23 April 2006.
26. KALÉ, L., AND KRJSHNAN, S. 1993. CHARM++: A portable concurrent object oriented system based on C++. In Proceedings of OOPSLA '93, 91-108.
27. KOHN, S., AND BADEN, S. 2001. Parallel software abstractions for structured adaptive mesh methods. Journal of Par. and Dist. Comp. 61, 6, 713-736.
28. REXILIUS, J., 2001. Physics-based nonrigid registration for medical image analysis. MS Thesis.
29. SANKARAN, S., SQUYRES, J. M., BARRETT, B., LUMSDAINE, A., DUELL, J., HARGROVE, P., AND ROMAN, E. 2005. The LAM/MPI checkpoint/restart framework: System-initiated checkpointing. Internar tionat Journal of High Performance Computing Applications 19, 4, 479-493.
30. SNIR, M., AND GROPP, W. 1998. MPI: The Complete Reference. The MIT Press.
31. TALOS, I. F., WALKER, D., ZOU, K., KIKINIS, R., JOLESZ, F., AND BLACK, P. 2002. Factors affecting resectability of adult hemispheric low-grade gliomas under intraoperative MRI-guidance. European Radiology 12.
32. TERAGRID PROJECT, 2006. TeraGrid Home page. http://teragrid.org/, accessed 23 April 2006.
33. TERESCO, J. D., FAIK, J., AND FLAHERTY, J. E. 2005. Resource-aware scientific computation on a heterogeneous cluster. Computing in Science & Engineering 7, 2, 40-50.
34. WARFIELD, S. K., TALOS, F., TEI, A., BHARATHA, A., NABAVI, A., FERRANT, M., BLACK, P., JOLESZ, F. A., AND KIKINIS, R. 2002. Real-time registration of volumetric brain MRI by biomechanical simulation of deformation during image guided neurosurgery. Computing and Visualization in Science 5, 1, 3-11.
35. WARFIELD, S. K., HAKER, S. J., TALOS, I. F., KEMPER, C. A., WEISENFELD, N., MEWES, A. U. J., GOLDBERG-ZLMRING, D., ZOU, K. H., WESTIN, C. F., AND WELLS, W. M. 2005. Capturing intraoperative deformations: research experience at Brigham and Women's Hospital. Medical Image Analysis 9, 2, 145-162.
36. WU, I. 1993. Multilist Scheduling: A New Parallel Programming Model. PhD thesis, School of Comp. Sci., Carnegie Mellon University, Pittsburg, PA 15213.
37. YUAN, X., SALISBURY, C., BALSARA, D., AND MELHEM, R. 1997. Load balancing package on distributed memory systems and its application particle-particle and particle-mesh (P3M) methods. Parallel Computing 23, 10, 1525-1544.