-
1
-
-
0037301349
-
Impact of highly active anti-retroviral therapy and immunologic status on hepatitis C virus quasispecies diversity in human immunodeficiency virus/hepatitis C virus-coinfected patients
-
Babik J. M. & Holodniy, M. (2003). Impact of highly active anti-retroviral therapy and immunologic status on hepatitis C virus quasispecies diversity in human immunodeficiency virus/hepatitis C virus-coinfected patients. J Virol 77, 1940-1950.
-
(2003)
J Virol
, vol.77
, pp. 1940-1950
-
-
Babik, J.M.1
Holodniy, M.2
-
2
-
-
0032837102
-
Liver fibrosis progression in human immunodeficiency virus and hepatitis C virus coinfected patients. The Multivirc Group
-
Benhamou, Y., Bochet M., Di Martino, V., Charlotte, F., Azria, F., Coutellier, A., Vidaud, M., Bricaire, F., Opolon, P. & other authors (1999). Liver fibrosis progression in human immunodeficiency virus and hepatitis C virus coinfected patients. The Multivirc Group. Hepatology 30, 1054-1058.
-
(1999)
Hepatology
, vol.30
, pp. 1054-1058
-
-
Benhamou, Y.1
Bochet, M.2
Di Martino, V.3
Charlotte, F.4
Azria, F.5
Coutellier, A.6
Vidaud, M.7
Bricaire, F.8
Opolon, P.9
-
3
-
-
0035112776
-
Increasing mortality due to end-stage liver disease in patients with human immunodeficiency virus infection
-
Bice, I., McGovern, B., Dhar, R., Stone, D., McGowan, K., Scheib, R. & Snydman, D. R. (2001). Increasing mortality due to end-stage liver disease in patients with human immunodeficiency virus infection. Clin Infect Dis 32, 492-497.
-
(2001)
Clin Infect Dis
, vol.32
, pp. 492-497
-
-
Bice, I.1
McGovern, B.2
Dhar, R.3
Stone, D.4
McGowan, K.5
Scheib, R.6
Snydman, D.R.7
-
4
-
-
2142768221
-
Hepatitis C virus (HCV) diversity in HIV-HCV-coinfected subjects initiating highly active antiretroviral therapy
-
& AIDS Clinical Trials Group 383 Study Team
-
Blackard, J. T., Yang, Y., Bordoni, P., Sherman, K. E., Chung, R. T. & AIDS Clinical Trials Group 383 Study Team (2004). Hepatitis C virus (HCV) diversity in HIV-HCV-coinfected subjects initiating highly active antiretroviral therapy. J Infect Dis 189, 1472-1481.
-
(2004)
J Infect Dis
, vol.189
, pp. 1472-1481
-
-
Blackard, J.T.1
Yang, Y.2
Bordoni, P.3
Sherman, K.E.4
Chung, R.T.5
-
5
-
-
10244236456
-
Special considerations in the initiation and management of antiretroviral therapy in individuals coinfected with HIV and hepatitis C
-
Braitstein, P., Palepu, A., Dieterich, D., Benhamou, Y. & Montaner, J. S. (2004). Special considerations in the initiation and management of antiretroviral therapy in individuals coinfected with HIV and hepatitis C. AIDS 18, 2221-2234.
-
(2004)
AIDS
, vol.18
, pp. 2221-2234
-
-
Braitstein, P.1
Palepu, A.2
Dieterich, D.3
Benhamou, Y.4
Montaner, J.S.5
-
6
-
-
0031059197
-
Long-term evolution of the 5′UTR and a region of NS4 containing a CTL epitope of hepatitis C virus in two haemophilic patients
-
Devereux, H. L., Brown, D., Dusheiko, G. M., Emery, V. C. & Lee, C. A. (1997). Long-term evolution of the 5′UTR and a region of NS4 containing a CTL epitope of hepatitis C virus in two haemophilic patients. J Gen Virol 78, 583-590.
-
(1997)
J Gen Virol
, vol.78
, pp. 583-590
-
-
Devereux, H.L.1
Brown, D.2
Dusheiko, G.M.3
Emery, V.C.4
Lee, C.A.5
-
7
-
-
0028129404
-
Increasing hepatitis C virus RNA levels in hemophiliacs: Relationship to human immunodeficiency virus infection and liver disease. Multicenter Hemophilia Cohort Study
-
Eyster, M. E., Fried, M. W., Di Bisceglie, A. M. & Goedert, J. J. (1994). Increasing hepatitis C virus RNA levels in hemophiliacs: relationship to human immunodeficiency virus infection and liver disease. Multicenter Hemophilia Cohort Study. Blood 84, 1020-1023.
-
(1994)
Blood
, vol.84
, pp. 1020-1023
-
-
Eyster, M.E.1
Fried, M.W.2
Di Bisceglie, A.M.3
Goedert, J.J.4
-
8
-
-
0034646996
-
-
Farci, P., Shimoda, A., Coiana, A., Diaz, G., Peddis, G., Melpolder, J. C., Strazzera, A., Chien, D. Y., Munoz, S. J. & other authors (2000). The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies. Science 288, 339-344.
-
Farci, P., Shimoda, A., Coiana, A., Diaz, G., Peddis, G., Melpolder, J. C., Strazzera, A., Chien, D. Y., Munoz, S. J. & other authors (2000). The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies. Science 288, 339-344.
-
-
-
-
9
-
-
0037022678
-
Early changes in hepatitis C viral quasispecies during interferon therapy predict the therapeutic outcome
-
Farci, P., Strazzera, R., Alter, H. J., Fard, S., Degioannis, D., Coiana, A., Peddis, G., Usai, F., Serra, G. & other authors (2002). Early changes in hepatitis C viral quasispecies during interferon therapy predict the therapeutic outcome. Proc Natl Acad Sci U S A 99, 3081-3086.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 3081-3086
-
-
Farci, P.1
Strazzera, R.2
Alter, H.J.3
Fard, S.4
Degioannis, D.5
Coiana, A.6
Peddis, G.7
Usai, F.8
Serra, G.9
-
10
-
-
0036721470
-
-
Goedert J. J., Eyster, M. E., Lederman, M. M., Mandalaki, T., De Moerloose, P., White, G. C., II, Angiolillo, A. L., Luban, N. L., Sherman, K. E. & other authors (2002). End-stage liver disease in persons with hemophilia and transfusion-associated infections. Blood 100, 1584-1589.
-
Goedert J. J., Eyster, M. E., Lederman, M. M., Mandalaki, T., De Moerloose, P., White, G. C., II, Angiolillo, A. L., Luban, N. L., Sherman, K. E. & other authors (2002). End-stage liver disease in persons with hemophilia and transfusion-associated infections. Blood 100, 1584-1589.
-
-
-
-
11
-
-
0035882187
-
Influence of human immunodeficiency virus infection on the course of hepatitis C virus infection: A meta-analysis
-
Graham, C. S., Baden, L. R., Yu, E., Mrus, J. M., Carnie, J., Heeren, T. & Koziel, M. J. (2001). Influence of human immunodeficiency virus infection on the course of hepatitis C virus infection: a meta-analysis. Clin Infect Dis 33, 562-569.
-
(2001)
Clin Infect Dis
, vol.33
, pp. 562-569
-
-
Graham, C.S.1
Baden, L.R.2
Yu, E.3
Mrus, J.M.4
Carnie, J.5
Heeren, T.6
Koziel, M.J.7
-
12
-
-
34548203941
-
Radical amino acid change versus positive selection in the evolution of viral envelope proteins
-
Hanada, K., Gojobori, T. & Li, W. H. (2006). Radical amino acid change versus positive selection in the evolution of viral envelope proteins. Gene 385, 83-88.
-
(2006)
Gene
, vol.385
, pp. 83-88
-
-
Hanada, K.1
Gojobori, T.2
Li, W.H.3
-
13
-
-
34047271100
-
A reduction in selective immune pressure during the course of chronic hepatitis C correlates with diminished biochemical evidence of hepatic inflammation
-
Hanada, K., Tanaka, Y., Mizokami, M., Gojobori, T. & Alter, H. J. (2006). A reduction in selective immune pressure during the course of chronic hepatitis C correlates with diminished biochemical evidence of hepatic inflammation. Virology 361, 27-33.
-
(2006)
Virology
, vol.361
, pp. 27-33
-
-
Hanada, K.1
Tanaka, Y.2
Mizokami, M.3
Gojobori, T.4
Alter, H.J.5
-
14
-
-
0027223705
-
Humoral immune response to hypervariable region 1 of the putative envelope glycoprotein (gp70) of hepatitis C virus
-
Kato, N., Sekiya, H., Ootsuyama, Y., Nakazawa, T., Hijikata, M., Ohkoshi, S. & Shimotohno, K. (1993). Humoral immune response to hypervariable region 1 of the putative envelope glycoprotein (gp70) of hepatitis C virus. J Virol 67, 3923-3930.
-
(1993)
J Virol
, vol.67
, pp. 3923-3930
-
-
Kato, N.1
Sekiya, H.2
Ootsuyama, Y.3
Nakazawa, T.4
Hijikata, M.5
Ohkoshi, S.6
Shimotohno, K.7
-
15
-
-
0036139211
-
MEGA2: Molecular Evolutionary Genetics Analysis software
-
Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17, 1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
16
-
-
0346765512
-
Viral hepatitis B
-
Lai, C. L., Ratziu, V., Yuen, M. F. & Poynard, T. (2003). Viral hepatitis B. Lancet 362, 2089-2094.
-
(2003)
Lancet
, vol.362
, pp. 2089-2094
-
-
Lai, C.L.1
Ratziu, V.2
Yuen, M.F.3
Poynard, T.4
-
17
-
-
0036828283
-
Evolution of hepatitis C viral quasispecies after liver transplantation
-
Lyra, A. C., Fan, X., Lang, D. M., Yusim, K., Ramrakhiani, S., Brunt E. M., Korber, B., Perelson, A. S. & Di Bisceglie, A. M. (2002). Evolution of hepatitis C viral quasispecies after liver transplantation. Gastroenterology 123, 1485-1493.
-
(2002)
Gastroenterology
, vol.123
, pp. 1485-1493
-
-
Lyra, A.C.1
Fan, X.2
Lang, D.M.3
Yusim, K.4
Ramrakhiani, S.5
Brunt, E.M.6
Korber, B.7
Perelson, A.S.8
Di Bisceglie, A.M.9
-
18
-
-
0035108092
-
Human immunodeficiency virus seroconversion and evolution of the hepatitis C virus quasispecies
-
Mao, O., Ray, S. C., Laeyendecker, O., Ticehurst, J. R., Strathdee, S. A., Vlahov, D. & Thomas, D. L. (2001). Human immunodeficiency virus seroconversion and evolution of the hepatitis C virus quasispecies. J Virol 75, 3259-3267.
-
(2001)
J Virol
, vol.75
, pp. 3259-3267
-
-
Mao, O.1
Ray, S.C.2
Laeyendecker, O.3
Ticehurst, J.R.4
Strathdee, S.A.5
Vlahov, D.6
Thomas, D.L.7
-
19
-
-
0026538287
-
Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: Quasispecies nature of HCV genome distribution
-
Martell, M., Esteban, J. I., Quer, J., Genesca, J., Weiner, A., Esteban, R., Guardia, J. & Gomez, J. (1992). Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution. J Virol 66, 3225-3229.
-
(1992)
J Virol
, vol.66
, pp. 3225-3229
-
-
Martell, M.1
Esteban, J.I.2
Quer, J.3
Genesca, J.4
Weiner, A.5
Esteban, R.6
Guardia, J.7
Gomez, J.8
-
20
-
-
0032475822
-
Hepatitis C viral dynamics in vivo and the antiviral efficacy of interferon-alpha therapy
-
Neumann, A. U., Lam, N. P., Dahari, H., Gretch, D. R., Wiley, T. E., Layden, T. J. & Perelson, A. S. (1998). Hepatitis C viral dynamics in vivo and the antiviral efficacy of interferon-alpha therapy. Science 282, 103-107.
-
(1998)
Science
, vol.282
, pp. 103-107
-
-
Neumann, A.U.1
Lam, N.P.2
Dahari, H.3
Gretch, D.R.4
Wiley, T.E.5
Layden, T.J.6
Perelson, A.S.7
-
21
-
-
0031059949
-
New hepatitis C virus (HCV) genotyping system that allows for identification of HCV genotypes la, 1b, 2a, 2b, 3a, 3b, 4, 5a, and 6a
-
Ohno, T., Mizokami, M., Wu, R. R., Saleh, M. G., Ohba, K, Orito, E., Mukaide, M., Williams, R. & Lau, J. Y. (1997). New hepatitis C virus (HCV) genotyping system that allows for identification of HCV genotypes la, 1b, 2a, 2b, 3a, 3b, 4, 5a, and 6a. J Clin Microbiol 35, 201-207.
-
(1997)
J Clin Microbiol
, vol.35
, pp. 201-207
-
-
Ohno, T.1
Mizokami, M.2
Wu, R.R.3
Saleh, M.G.4
Ohba, K.5
Orito, E.6
Mukaide, M.7
Williams, R.8
Lau, J.Y.9
-
22
-
-
0032795492
-
Evolution of the hepatitis C virus second envelope protein hypervariable region in chronically infected patients receiving alpha interferon therapy
-
Pawlotsky, J. M., Germanidis, G., Frainais, P. O., Bouvier, M., Soulier, A., Pellerin, M. & Dhumeaux, D. (1999). Evolution of the hepatitis C virus second envelope protein hypervariable region in chronically infected patients receiving alpha interferon therapy. J Virol 73, 6490-6499.
-
(1999)
J Virol
, vol.73
, pp. 6490-6499
-
-
Pawlotsky, J.M.1
Germanidis, G.2
Frainais, P.O.3
Bouvier, M.4
Soulier, A.5
Pellerin, M.6
Dhumeaux, D.7
-
23
-
-
0346157289
-
Viral hepatitis C
-
Poynard, T., Yuen, M. F., Ratziu, V. & Lai, C. L. (2003). Viral hepatitis C. Lancet 362, 2095-2100.
-
(2003)
Lancet
, vol.362
, pp. 2095-2100
-
-
Poynard, T.1
Yuen, M.F.2
Ratziu, V.3
Lai, C.L.4
-
24
-
-
0035168903
-
Liver fibrosis progression is related to CD4 cell depletion in patients coinfected with hepatitis C virus and human immunodeficiency virus
-
Puoti, M., Bonacini, M., Spinetti, A., Putzolu, V., Govindarajan, S., Zaltron, S., Favret, M., Callea, F., Gargiulo, F. & other authors (2001). Liver fibrosis progression is related to CD4 cell depletion in patients coinfected with hepatitis C virus and human immunodeficiency virus. J Infect Dis 183, 134-137.
-
(2001)
J Infect Dis
, vol.183
, pp. 134-137
-
-
Puoti, M.1
Bonacini, M.2
Spinetti, A.3
Putzolu, V.4
Govindarajan, S.5
Zaltron, S.6
Favret, M.7
Callea, F.8
Gargiulo, F.9
-
25
-
-
0036773016
-
GENIE: Estimating demographic history from molecular phylogenies
-
Pybus, O. G. & Rambaut, A. (2002). GENIE: estimating demographic history from molecular phylogenies. Bioinformatics 18, 1404-1405.
-
(2002)
Bioinformatics
, vol.18
, pp. 1404-1405
-
-
Pybus, O.G.1
Rambaut, A.2
-
26
-
-
0035933522
-
The epidemic behavior of the hepatitis C virus
-
Pybus, O. G., Charleston, M. A., Gupta, S., Rambaut, A., Holmes, E. C. & Harvey, P. H. (2001). The epidemic behavior of the hepatitis C virus. Science 292, 2323-2325.
-
(2001)
Science
, vol.292
, pp. 2323-2325
-
-
Pybus, O.G.1
Charleston, M.A.2
Gupta, S.3
Rambaut, A.4
Holmes, E.C.5
Harvey, P.H.6
-
27
-
-
11244345995
-
HCV quasi-species evolution: Association with progression to end-stage liver disease in hemophiliacs infected with HCV or HCV/HIV
-
Oin, H., Shire, N. J., Keenan, E. D., Rouster, S. D., Eyster, M. E., Goedert, J. J., Koziel, M. J. & Sherman, K. E. (2005). HCV quasi-species evolution: association with progression to end-stage liver disease in hemophiliacs infected with HCV or HCV/HIV. Blood 105, 533-541.
-
(2005)
Blood
, vol.105
, pp. 533-541
-
-
Oin, H.1
Shire, N.J.2
Keenan, E.D.3
Rouster, S.D.4
Eyster, M.E.5
Goedert, J.J.6
Koziel, M.J.7
Sherman, K.E.8
-
28
-
-
0034044313
-
Estimating the rate of molecular evolution: Incorporating non-contemporaneous sequences into maximum likelihood phylogenies
-
Rambaut, A. (2000). Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 16, 395-399.
-
(2000)
Bioinformatics
, vol.16
, pp. 395-399
-
-
Rambaut, A.1
-
29
-
-
0034011434
-
Hypervariable region 1 sequence stability during hepatitis C virus replication in chimpanzees
-
Ray, S. C., Mao, O., Lanford, R. E., Bassett S., Laeyendecker, O., Wang, Y. M. & Thomas, D. L. (2000). Hypervariable region 1 sequence stability during hepatitis C virus replication in chimpanzees. J Virol 74, 3058-3066.
-
(2000)
J Virol
, vol.74
, pp. 3058-3066
-
-
Ray, S.C.1
Mao, O.2
Lanford, R.E.3
Bassett, S.4
Laeyendecker, O.5
Wang, Y.M.6
Thomas, D.L.7
-
30
-
-
0037086517
-
Influence of CD4 cell counts on the genetic heterogeneity of hepatitis C virus in patients coinfected with human immunodeficiency virus
-
Roque-Afonso, A. M., Robain, M., Simoneau, D., Rodriguez-Mathieu, P., Gigou, M., Meyer, L. & Dussaix, E. (2002). Influence of CD4 cell counts on the genetic heterogeneity of hepatitis C virus in patients coinfected with human immunodeficiency virus. J Infect Dis 185, 728-733.
-
(2002)
J Infect Dis
, vol.185
, pp. 728-733
-
-
Roque-Afonso, A.M.1
Robain, M.2
Simoneau, D.3
Rodriguez-Mathieu, P.4
Gigou, M.5
Meyer, L.6
Dussaix, E.7
-
31
-
-
1842510015
-
High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression
-
Sheridan, I., Pybus, O. G., Holmes, E. C. & Klenerman, P. (2004). High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression. J Virol 78, 3447-3454.
-
(2004)
J Virol
, vol.78
, pp. 3447-3454
-
-
Sheridan, I.1
Pybus, O.G.2
Holmes, E.C.3
Klenerman, P.4
-
32
-
-
0035802435
-
Positively selected amino acid sites in the entire coding region of hepatitis C virus subtype 1b
-
Suzuki, Y. & Gojobori, T. (2001). Positively selected amino acid sites in the entire coding region of hepatitis C virus subtype 1b. Gene 276, 83-87.
-
(2001)
Gene
, vol.276
, pp. 83-87
-
-
Suzuki, Y.1
Gojobori, T.2
-
33
-
-
0037180344
-
A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades
-
Tanaka, Y., Hanada, K., Mizokami, M., Yeo, A. E., Shih, J. W., Gojobori, T. & Alter, H. J. (2002). A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades. Proc Natl Acad Sci U S A 99, 15584-15589.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15584-15589
-
-
Tanaka, Y.1
Hanada, K.2
Mizokami, M.3
Yeo, A.E.4
Shih, J.W.5
Gojobori, T.6
Alter, H.J.7
-
34
-
-
0030993616
-
Effect of immunosuppression on composition of quasispecies population of hepatitis C virus in patients with chronic hepatitis C coinfected with human immunodeficiency virus
-
Toyoda, H., Fukuda, Y., Koyama, Y., Takamatsu, J., Saito, H. & Hayakawa, T. (1997). Effect of immunosuppression on composition of quasispecies population of hepatitis C virus in patients with chronic hepatitis C coinfected with human immunodeficiency virus. J Hepatol 26, 975-982.
-
(1997)
J Hepatol
, vol.26
, pp. 975-982
-
-
Toyoda, H.1
Fukuda, Y.2
Koyama, Y.3
Takamatsu, J.4
Saito, H.5
Hayakawa, T.6
-
35
-
-
0028820333
-
A new method of inference of ancestral nucleotide and amino acid sequences
-
Yang, Z., Kumar, S. & Nei, M. (1995). A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141, 1641-1650.
-
(1995)
Genetics
, vol.141
, pp. 1641-1650
-
-
Yang, Z.1
Kumar, S.2
Nei, M.3
|