Genomic selection for marker-assisted improvement in line crosses

Theoretical and Applied Genetics

Volumn 115, Issue 5, 2007, Pages 665-674

  Piyasatian, N ^a   Fernando, R L ^b   Dekkers, J C M ^b  

^a KING MONGKUT'S INSTITUTE OF TECHNOLOGY LADKRABANG   (Thailand)

^b IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; MATHEMATICAL MODELS;

ESTIMATES OF VARIANCE; GENOMIC SELECTION; HERITABILITY;

GENE EXPRESSION;

ALLELE; ANIMAL; ARTICLE; CROSS BREEDING; GENETIC MARKER; GENETIC SELECTION; GENETICS; GENOME; PLANT; QUANTITATIVE TRAIT; QUANTITATIVE TRAIT LOCUS;

ALLELES; ANIMALS; CROSSES, GENETIC; GENETIC MARKERS; GENOME, PLANT; PLANTS; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE; SELECTION (GENETICS);

EID: 34548182518     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-007-0597-y     Document Type: Article

References (25)

1. Beavis WD (1994) The power and deceit of QTL experiments: such as the yup locus control of carotenoid pigmenta- lessons from comparative QTL studies. In: Proceedings of the corn and sorghum industry research conference Washington, DC, American Seed Trade Association
2. Beavis WD (1998) QTL analyses: power, precision, and accuracy, there is no overwhelming evidence in support of this. In: Molecular dissection of complex traits, CRC Press, Boca Raton, pp 145-162
3. Bost B, de Vienne D, Hospital F, Moreau L, Dillmann C (2001) Genetic and nongenetic bases for the L-shaped distribution of quantitative trait loci effects. Genetics 157:1773-1787
4. Dekkers JCM, Chakraborty R (2001) Potential gain from optimizing multigeneration selection on an identified quantitative trait locus. J Anim Sci 79:2975-2990
5. Dekkers JCM, Hospital F (2002) The use of molecular genetics in the improvement of agricultural populations. Nat Rev Genet 3:22-32
6. Gianola D, Perez-Enciso M, Toro MA (2003) On marker-assisted prediction of genetic value: beyond the Ridge. Genetics 163:347-365
7. Goddard ME, Hayes BJ (2002) Optimisation of response using molecular data. In: Proc. 7th World Congr. Genet. Appl. Livest. Prod. Montpellier, France, August 19-23, 2002
8. Hayes B, Goddard ME (2003) Evaluation of marker assisted selection in pig enterprises. Livest Prod Sci 81:197-211
9. Henderson CR (1975) Best linear unbiased estimation and prediction under a selection model. Biometrics 31:423-447
10. Hospital F, Moreau L, Lacoudre F, Charcosset A, Gallais A (1997) More on the efficiency of marker-assisted selection. Theor Appl Genet 95:1181-1189
11. Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743-756
12. Melchinger AE, Utz HF, Schon CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149:383-403
13. Meuwissen THE, Hayes BJ, Goddard ME (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics 157:1819-1829
14. Moreau L, Charcosset A, Hospital F, Gallais A (1998) Marker-assisted selection efficiency in populations of finite size. Genetics 148:1353-1365
15. 2 crosses between outbred lines. Genetics 155:391-405
16. Piyasatian N, Totir LR, Fernando RL, Dekkers JCM (2006) QTL detection and marker-assisted composite line development. In Midwestern annual meeting polk county convention center, Des Moines, Iowa http://www.asas.org/midwest/2006/ 2006abstracts.pdf
17. Solberg TR, Sonesson A, Wooliams J, Meuwissen THE (2006) Genomic selection using different marker types and density. In: Proceedings of the 8th world congress on genetics applied to livestock production 8WCGALP secretariat, Belo Horizonte, Brazil (secretariat@wcgalp8.org.br)
18. Soller M, Beckmann JS (1983) Genetic polymorphism in varietal identification and genetic improvement. Theor Appl Genet 67:25-33
19. Spelman RJ, Garrick DJ (1998) Genetic and economic responses for within-family marker-assisted selection in dairy cattle breeding schemes. J Dairy Sci 81:2942-2950
20. Visscher P, Pong-Wong R, Whittemore C, Haley C (2000) Impact of biotechnology on (cross)breeding programmes in pigs. Livest Prod Sci 65:57-70
21. Whittaker JC, Haley CS, Thompson R (1997) Optimal weighting of information in marker-assisted selection. Genet Res 69:137-144
22. Whittaker JC, Thompson R, Denham MC (2000) Marker-assisted selection using ridge regression. Genet Res 75:249-252
23. Xu S (2003a) Theoretical basis of the Beavis effect. Genetics 165:2259-2268
24. Xu S (2003b) Estimating polygenic effects using markers of the entire genome. Genetics 163:789-801
25. Zhang W, Smith C (1992) Computer simulation of marker-assisted selection utilizing linkage disequilibrium. Theor Appl Genet 83:813-820