Association mapping of Stagonospora nodorum blotch resistance in modern European winter wheat varieties

Theoretical and Applied Genetics

Volumn 115, Issue 5, 2007, Pages 697-708

  Tommasini, L ^a,b   Schnurbusch, T ^a,c   Fossati, D ^d   Mascher, F ^d   Keller, B ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF ADELAIDE   (Australia)

^d Station Fédérale de Recherches Agronomiques   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; CHROMOSOMES; LEAST SQUARES APPROXIMATIONS; MATHEMATICAL MODELS;

ASSOCIATION MAPPING; GENETIC VARIANCE; LINEAR MODELS;

CROPS;

ARTICLE; ASCOMYCETES; CHROMOSOME MAP; EUROPE; GENE LINKAGE DISEQUILIBRIUM; GENETIC MARKER; GENETICS; IMMUNOLOGY; INNATE IMMUNITY; MICROBIOLOGY; PHYSIOLOGY; PLANT CHROMOSOME; PLANT DISEASE; POPULATION DYNAMICS; QUANTITATIVE TRAIT; SEASON; VARIABLE NUMBER OF TANDEM REPEAT; WHEAT;

ASCOMYCOTA; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; EUROPE; GENETIC MARKERS; IMMUNITY, NATURAL; LINKAGE DISEQUILIBRIUM; MINISATELLITE REPEATS; PLANT DISEASES; POPULATION DYNAMICS; QUANTITATIVE TRAIT, HERITABLE; SEASONS; TRITICUM;

PHAEOSPHAERIA NODORUM; TRITICUM AESTIVUM;

EID: 34548157400     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-007-0601-6     Document Type: Article

References (53)

1. Blair MA, Garris A, Iyer A, Chapman B, Kresovich S et al (2003) High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice (Oryza sativa L.). Theor Appl Genet 107:62-73
2. Botswick ED, Ohm HM, Shaner G (1993) Inheritance of Septoria glume blotch resistance in wheat. Crop Sci 33:439-443
3. Breseghello F, Sorrells MS (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172:1165-1177
4. Brönnimann A (1968) Zur Kenntnis von Septoria nodorum Berk., dem Erreger der Spelzenbräune und einer Blattdürre des Weizens. J Phytopathol 61:101-146
5. Brönnimann A, Fossati A, Hani F (1973) Spreading of Septoria nodorum (Berk) and damage to artificially induced mutants of winter wheat cultivar Zenith (Triticum aestivum). Plant Breed 70:230-245
6. Ching A, Caldwell KS, Jung M, Dolan M, Smith OS et al (2002) SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genet 3:19
7. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
8. Chunwongse J, Doganlar S, Crossman C, Jiang J, Tanksley SD (1997) High-resolution genetic map of the Lv resistance locus in tomato. Theor Appl Genet 95:220-223
9. Duczek LJ, Sutherland KA, Reed SL, Bailey KL, Lanford GP (1999) Survival of leaf spot pathogens on crop residues of wheat and barley in Saskatchewan. Can J Plant Pathol 21:165-173
10. Farnir F, Coppieters W, Arranz J-J, Berzi P, Cambisano N et al (2000) Extensive genome-wide linkage disequilibrium in cattle. Genome Res 10:220-227
11. Fried PM, Meister E (1987) Inheritance of leaf and head resistance of winter wheat to Septoria nodorum in diallel cross. Phytopathology 77:1371-1375
12. Garris AJ, McCouch SR, Kresovich S (2003) Population structure and its effects on haplotype diversity and linkage disequilibrium surrounding the a5 locus of rice Oryza sativa L. Genetics 165:759-769
13. Gebhardt C, Ballvora A, Walkemeier B, Oberhagemann P, Shueler K (2004) Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type. Mol Breed 13:93-102
14. Goldstein DB, Tate SK, Sisodiya SM (2003) Pharmacogenetics goes genomic. Nat Rev Genet 4:937-947
15. Hagenblad J, Tang C, Molitor J, Werner J, Zhao K et al (2004) Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics 168:1627-1638
16. Halama P (2002) Mating relationships between isolates of Phaeosphaeria nodorum (anamorph Stagonospora nodorum) from geographical locations. Eur J Plant Pathol 108:593-596
17. Huang Q, Borner A, Roder MS, Ganal MW (2002) Assessing genetic diversity of wheat (Triticum aestivum L.) germplasm using microsatellite markers. Theor Appl Genet 105:699-707
18. Hudson RR (2001) Linkage disequilibrium and recombination. In: Balding D, Bishop M, Cannings C (eds) Handbook of statistical genetics. Wiley, New York, pp 309-324
19. Igartua E, Casas AM, Ciudad F, Montoya JL, Romagosa I (1999) RFLP markers associated with major genes controlling heading date evaluated in a barley germ plasm pool. Heredity 83:551-559
20. Ivandic V, Hackett CA, Nevo E, Keith R, Thomas WTB et al (2002) Analysis of simple sequence repeats (SSRs) in wild barley from the Fertile Crescent: associations with ecology, geography and flowering time. Plant Mol Biol 48:511-527
21. Ivandic V, Thomas WTB, Nevo E, Zhang Z, Forster BP (2003) Associations of simple sequence repeats with quantitative trait variation including biotic and abiotic stress tolerance in Hordeum spontaneum. Plant Breed 122:300-304
22. Keller SM, McDermott JM, Pettway RE, Keller SM, McDermott JM, Pettway RE et al (1997) Gene flow and sexual reproduction in the wheat glume blotch pathogen Phaeosphaeria nodorum (Anamorph Stagonospora nodorum). Phytopathology 87:353-358
23. Kilpikari R, Sillanpää MJ (2003) Bayesian analysis of multilocus association in quantitative and qualitative traits. Genet Epidemiol 25:122-135
24. Kraakman ATW, Rients EN, Petra MM, Van den Berg M, Stam P et al (2004) Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168:435-446
25. Maccaferri M, Sanguineti MC, Noli E, Tuberosa R (2005) Population structure and long-range linkage disequilibrium in a durum wheat elite collection. Mol Breed 15:271-289
26. Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J et al (2002) The extent of linkage disequilibrium in Arabidopsis thaliana. Nat Genet 30:190-193
27. Paillard S, Schnurbusch T, Winzeler M, Messmer M, Sourdille P et al (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.). Theor Appl Genet 107:1235-1242
28. Pakniyat H, Powell W, Baird E, Handley LL, Robinson D et al (1997) AFLP variation in wild barley (Hordeum spontaneum C. Koch) with reference to salt tolerance and associated ecogeography. Genome 40:332-341
29. Palaisa KA, Morgante M, Williams M, Rafalski A (2003) Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci. Plant Cell 15:1795-1806
30. Prasad M, Varshney RK, Roy JK, Balyan HS, Gupta PK (2000) The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat. Theor Appl Genet 100:584-592
31. Pritchard JK, Stephens M, Rosenberg NA, Donnelly P (2000) Association mapping in structured populations. Am J Hum Genet 67:170-181
32. Ravel C, Praud S, Murigneux A, Linossier L, Dardevet M, Balfourier F, Dufour P, Brunel D, Charmet G (2006) Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association study. Theor Appl Genet 112:738-743
33. Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR et al (2001) Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Natl Acad Sci USA 98:11479-11484
34. Röder MS, Wendehake K, Korzun V, Bredemeijer G, Laborie D et al (2002) Construction and analysis of a microsatellite-based database of European wheat varieties. Theor Appl Genet 106:67-73
35. Rosenberg NA, Li LM, Ward R, Pritchard JK (2003) Informativeness of genetic markers for inference of ancestry. Am J Hum Genet 73:1402-1422
36. Schnurbusch T, Paillard S, Fossati D, Messmer M, Schachermayr G et al (2003) Detection of QTLs for Stagonospora glume blotch resistance in Swiss winter wheat. Theor Appl Genet 107:1226-1234
37. Scott PR, Benedikz PW, Cox CJ (1982) A genetic-study of the relationship between height, time of ear emergence and resistance to Septoria nodorum in wheat. Plant Pathol 31:45-60
38. Searle SR (1987) Linear models for unbalanced data. Wiley, New York
39. Shaner G, Finney RE (1997) The effect of nitrogen fertilisation on the expression of slow-mildewing resistance in Knox wheat. Phytopathology 67:1051-1056
40. Shaner G (1999) Breeding for resistance to septoria and stagonospora blotches in winter wheat in the United States. In: van Ginkel M, McNab A, Krupinsky J (eds) Septoria and Stagonospora diseases of cereals: a compilation of global research. Proceedings of the fifth international septoria workshop, CYMMIT, Mexico
41. Siedler H, Messmer MM, Schachermayr GM, Winzeler H, Winzeler M (1994) Genetic diversity in European wheat and spelt breeding material based on RFLP data. Theor Appl Genet 88:994-1003
42. Simko I, Costanzo S, Haynes KG, Christ BJ, Jones RW (2004) Linkage disequilibrium mapping of a Verticillium dahliae resistance quantitative trait locus in tetraploid potato (Solanum tuberosum) through a candidate gene approach. Theor Appl Genet 108:217-224
43. Stachel M, Lelley T, Grausgruber H, Vollmann J (2000) Application of microsatellites in wheat (Triticum aestivum L.) for studying genetic differentiation caused by selection for adaptation and use. Theor Appl Genet 100:242-248
44. Stein N, Herren G, Keller B (2001) A new DNA extraction method for high-throughput marker analysis in a large-genome species such as Triticum aestivum. Plant Breed 120:354-356
45. Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205-233
46. Tenaillon MI, Sawkins MC, Long AD, Gaut RL, Doebley JF et al (2001) Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci USA 98:9161-9166
47. Thornsberry JM, Goodman MM, Doebley J, Kresovich S, Nielsen D et al (2001) Dwarf8 polymorphisms associate with variation in flowering time. Nat Genet 28:286-289
48. van Ginkel M, Rajaram S (1999) Breeding for resistance to the Septoria/stagonospora blights of wheat. In: van Ginkel M, McNab A, Krupinsky JM (eds) Septoria and stagonospora diseases of cereals: a compilation of global research. CYMMIT, Mexico, pp 117-126
49. Virk PS, Ford-Lloyd BV, Jackson MT, Pooni HS, Clemeno TP (1996) Predicting quantitative variation within rice germplasm using molecular markers. Heredity 76:296-304
50. Weir BS (1996) Genetic data analysis II. Methods for discrete population genetic data. Sinauer Associates, Sunderland
51. Wicki W, Winzeler M, Schmid JE, Stamp P, Messmer MM (1999) Inheritance of resistance to leaf and glume blotch caused by Septoria nodorum Berk. In winter wheat. Theor Appl Genet 99:1265-1272
52. Wilson LM, Whitt SR, Ibanez AM, Rocheford TR, Goodman MM et al (2004) Dissection of maize kernel composition and starch production by candidate gene association. Plant Cell 16:2719-2733
53. Yu J, Pressoir G, Briggs WH, Bi IV, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen D M, Holland JB, Kresovich S, Buckler ES (2005) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38:203-208