-
1
-
-
0036374299
-
Structural alignment of large-size proteins via Lagrangianrelaxation
-
A. Caprara and G. Lancia. Structural alignment of large-size proteins via Lagrangianrelaxation. In RECOMB, pages 100-108, 2002.
-
(2002)
RECOMB
, pp. 100-108
-
-
Caprara, A.1
Lancia, G.2
-
2
-
-
1842451398
-
1001 optimal pdb structure alignments: Integer programming methods for finding the maximum contact map overlap
-
A. Caprara, R. Carr, S. Istrail, G. Lancia, and Brian Walenz. 1001 optimal pdb structure alignments: Integer programming methods for finding the maximum contact map overlap. Journal of Computational Biology, 11(1):27-52, 2004.
-
(2004)
Journal of Computational Biology
, vol.11
, Issue.1
, pp. 27-52
-
-
Caprara, A.1
Carr, R.2
Istrail, S.3
Lancia, G.4
Walenz, B.5
-
3
-
-
0037614067
-
Alignment of protein structures with a memetic evolutionary algorithm
-
San Francisco, CA, USA, Morgan Kaufmann Publishers Inc
-
R. Carr, W. Hart, N. Krasnogor, J. Hirst, E. K. Burke, and J. Smith. Alignment of protein structures with a memetic evolutionary algorithm. In GECCO 02: Proceedings of the Genetic and Evolutionary Computation Conference, pages 1027-1034, San Francisco, CA, USA, 2002.Morgan Kaufmann Publishers Inc.
-
(2002)
GECCO 02: Proceedings of the Genetic and Evolutionary Computation Conference
, pp. 1027-1034
-
-
Carr, R.1
Hart, W.2
Krasnogor, N.3
Hirst, J.4
Burke, E.K.5
Smith, J.6
-
4
-
-
0001660039
-
An energy function and continuous edit process for graph matching
-
A. M. Finch, R. C. Wilson, and E. R.Hancock. An energy function and continuous edit process for graph matching. Neural Computation, 10(7):1873-1894, 1998.
-
(1998)
Neural Computation
, vol.10
, Issue.7
, pp. 1873-1894
-
-
Finch, A.M.1
Wilson, R.C.2
Hancock, E.R.3
-
5
-
-
0026726481
-
Topology fingerprint approach to the inverse protein folding problem
-
A. Godzik, A. Kolinski, and J. Skolnick. Topology fingerprint approach to the inverse protein folding problem. Journal of Molecular Biology, 5(1):227-238, 1992.
-
(1992)
Journal of Molecular Biology
, vol.5
, Issue.1
, pp. 227-238
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
6
-
-
0028598811
-
Flexible algorithm for direct multiple alignment of protein structures and sequences
-
A. Godzik and J. Skolnick. Flexible algorithm for direct multiple alignment of protein structures and sequences. Computer Applications in the Biosciences, 10(6):587-596, 1994.
-
(1994)
Computer Applications in the Biosciences
, vol.10
, Issue.6
, pp. 587-596
-
-
Godzik, A.1
Skolnick, J.2
-
10
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
L. Holm and C. Sander. Protein structure comparison by alignment of distance matrices. Journal of Molecular Biology, 233:123-138, 1993.
-
(1993)
Journal of Molecular Biology
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
11
-
-
0036137593
-
Doubly constrained network for combinatorial optimization
-
S. Ishii and M. Sato. Doubly constrained network for combinatorial optimization. Neurocomputing, 43:239-257, 2002.
-
(2002)
Neurocomputing
, vol.43
, pp. 239-257
-
-
Ishii, S.1
Sato, M.2
-
12
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
W. Kabash. A solution for the best rotation to relate two sets of vectors. Acta Crystallographica, A32(5):922-923, 1978.
-
(1978)
Acta Crystallographica
, vol.A32
, Issue.5
, pp. 922-923
-
-
Kabash, W.1
-
13
-
-
3543130014
-
Self generating metaheuristics in bioinformatics: The proteins structure comparison case
-
N. Krasnogor. Self generating metaheuristics in bioinformatics: The proteins structure comparison case. Genetic Programming and Evolvable Machines, 5(2):181-201, 2004.
-
(2004)
Genetic Programming and Evolvable Machines
, vol.5
, Issue.2
, pp. 181-201
-
-
Krasnogor, N.1
-
14
-
-
0034826884
-
101 optimal pdb structure alignments: A branch-and-cut algorithm for the maximum contact map overlap problem
-
NewYork, NY, USA, ACM Press
-
G. Lancia, R. Carr, B. Walenz, and S. Istrail. 101 optimal pdb structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem. In RECOMB 01: Proceedings of the fifth annual international conference on Computational biology, pages 193-202, NewYork, NY, USA, 2001. ACM Press.
-
(2001)
RECOMB 01: Proceedings of the fifth annual international conference on Computational biology
, pp. 193-202
-
-
Lancia, G.1
Carr, R.2
Walenz, B.3
Istrail, S.4
-
15
-
-
35048903157
-
A significant improvement of softassign with diffusion kernels
-
A. Fred, Terry Caelli, R. P. W. Duin, A. Campilho, and D. de Ridder, editors, Structural, Syntactic, and Statistical Pattern Recognition: Joint IAPR International Workshops, SSPR 2004 and SPR 2004, of
-
M.A. Lozano and F. Escolano. A significant improvement of softassign with diffusion kernels. In A. Fred, Terry Caelli, R. P. W. Duin, A. Campilho, and D. de Ridder, editors, Structural, Syntactic, and Statistical Pattern Recognition: Joint IAPR International Workshops, SSPR 2004 and SPR 2004, volume 3138 of Lecture Notes in Computer Science, pages 76-84, 2004.
-
(2004)
Lecture Notes in Computer Science
, vol.3138
, pp. 76-84
-
-
Lozano, M.A.1
Escolano, F.2
-
16
-
-
0000142394
-
A relationship between arbitrary positive matrices and doubly stochastic matrices
-
R. Sinkhorn. A relationship between arbitrary positive matrices and doubly stochastic matrices. Annals of Mathematical Statistics, 35(2):876-879, 1964.
-
(1964)
Annals of Mathematical Statistics
, vol.35
, Issue.2
, pp. 876-879
-
-
Sinkhorn, R.1
-
17
-
-
25144463996
-
-
D. M. Strickl and, E. Barnes, and J. S. Sokol. Optimal protein structure alignment using maximum cliques. Operations Research, 53(3):389-402, 2005.
-
D. M. Strickl and, E. Barnes, and J. S. Sokol. Optimal protein structure alignment using maximum cliques. Operations Research, 53(3):389-402, 2005.
-
-
-
-
18
-
-
33745796717
-
-
W. Xie and N. V. Sahinidis. A branch-and-reduce algorithm for the contact map overlap problem. In A. Apostolico, C. Guerra, S. Istrail, P. Pevzner, and M. Waterman, editors, RECOMB, 3909 of Lecture Notes in Computer Science, pages 516-529. Springer Berlin / Heidelberg, 2006.
-
W. Xie and N. V. Sahinidis. A branch-and-reduce algorithm for the contact map overlap problem. In A. Apostolico, C. Guerra, S. Istrail, P. Pevzner, and M. Waterman, editors, RECOMB, volume 3909 of Lecture Notes in Computer Science, pages 516-529. Springer Berlin / Heidelberg, 2006.
-
-
-
|