3D-Structure of the interior fusion peptide of HGV/GBV-C by 1H NMR, CD and molecular dynamics studies

Archives of Biochemistry and Biophysics

Volumn 465, Issue 1, 2007, Pages 187-196

  Mazzini, S ^a   Fernandez Vidal, M ^b   Galbusera, V ^a   Castro Roman, F ^c   Bellucci, M C ^a   Ragg, E ^a   Haro, I ^b  

^a UNIVERSITY OF MILAN   (Italy)

^b DEPARTMENT OF ENVIRONMENTAL CHEMISTRY   (Spain)

^c INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

Circular dichroism; E2 envelope protein; Fusion peptides; Hepatitis G virus; Liposomes; Model membranes; Molecular dynamics; NMR spectroscopy

Indexed keywords

PEPTIDE; TRIFLUOROETHANOL; WATER;

AMINO TERMINAL SEQUENCE; ARTICLE; CALCULATION; CARBOXY TERMINAL SEQUENCE; CIRCULAR DICHROISM; DEUTERIUM HYDROGEN EXCHANGE; ENERGY; HEPATITIS G VIRUS; LIPID BILAYER; MEASUREMENT; MOLECULAR DYNAMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; STRUCTURE ANALYSIS;

CIRCULAR DICHROISM; COMPUTER SIMULATION; LIPID BILAYERS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTONS; SOLVENTS; VIRAL ENVELOPE PROTEINS; WATER;

GB VIRUS C;

EID: 34548056084     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2007.05.024     Document Type: Article

References (76)

1. Berzsenyi M.D., Bowden D.S., and Roberts S.K. J. Clin. Virol. 33 (2005) 257-266
2. Kaiser T., and Tillman H.L. AIDS Rev. 7 (2005) 3-12
3. Polgreen P.M., Xiang J., Chang Q., and Stapleton J.T. Microbes Infect. 5 (2003) 1255-1261
4. Rojo N., Gómara M.J., Alsina M.A., and Haro I. J. Pept. Res. 61 (2003) 318-330
5. Dastis M., Rojo N., Alsina M.A., Haro I., Panda A.K., and Mestres C. Biophys. Chem. 109 (2004) 375-385
6. Larios C., Casas J., Mestres C., Haro I., and Alsina M.A. Luminiscence 2 (2005) 279-281
7. Larios C., Christiaens B., Gómara M.J., Alsina M.A., and Haro I. FEBS J. 272 (2005) 2456-2466
8. Larios C., Casas J., Alsina M.A., Mestres C., Gómara M.J., and Haro I. Arch. Biochem. Biophys. 442 (2005) 149-159
9. Pecheur E.I., Sainte-Marie J., Bienvene A., and Hoekstra D. J. Membr. Biol. 167 (1999) 1-17
10. Tamm L.K., Hang X., Li Y., and Lai A.L. Biopolymers 66 (2002) 249-260
11. Reichert J., Grasnick D., Afonin S., Buerck J., Wadhwani P., and Ulrich A.S. Eur. Biophys. J. (2006)
12. Lüneberg L., Martin I., Nüssler F., Ruysschaert J.M., and Herrman A. J. Biol. Chem. 270 (1995) 27606-27614
13. Macosko J.C., Kim C.-H., and Shin Y.-K. J. Biol. Chem. 267 (1997) 1139-1148
14. Dubovskii P.V., Li H., Takahashi S., Arseniev A.S., and Akasaka K. Protein Sci. 9 (2000) 786-798
15. Chang D.-K., Cheng S.-F., and Chien W.-J. J. Virol. 71 (1997) 6593-6602
16. Chang D.-K., Cheng S.-F., Trivedi V.D., and Yang S.H. J. Biol. Chem. 275 (2000) 19150-19158
17. Kantchev E.A.B., Wu S.F.C.C.W., Huang H.-J., and Chang D.-K. Arch. Biochem. Biophys. 425 (2004) 173-183
18. Bradshaw J.P., Darkes M.J.M., Harroun T.A., Katsaras J., and Epand R.M. Biochemistry 39 (2000) 6581-6585
19. Wu C.W., Cheng S.-F., Huang W.-N., Trivedi V.D., Veramuthu B., Kantchev E.A.B., Wu W.-G., and Chang D.-K. Biochim. Biophys. Acta 1612 (2003) 41-51
20. Wasniewski C.M., Parkanzky P.D., Bodner M.L., and Weliky D.P. Chem. Phys. Lipids 132 (2004) 89-100
21. Hang X., Steinhauer D.A., Wharton S.A., and Tamm L.K. Biochemistry 38 (1999) 15052-15059
22. Hang X., and Tamm L.K. J. Mol. Biol. 304 (2000) 953-965
23. Li Y., Han X., Lai A.L., Bushweller J.H., Cafiso D.S., and Tamm L.K. J. Virol. 79 (2005) 12065-12076
24. Sammalkorpi M., and Lazaridis T. Biochim. Biophys. Acta 1768 (2007) 30-38
25. Pereira F.B., Goni F.M., Muga A., and Nieva J.L. Biophys. J. 73 (1997) 1977-1986
26. Pereira F.B., Goni F.M., and Nieva J.L. AIDS Res. Hum. Retroviruses 13 (1997) 1203-1211
27. Pereira F.B., Valpuesta J.M., Basanez G., Goni F.M., and Nieva J.L. Chem. Phys. Lipids 103 (1999) 11-20
28. Nieva J.L., and Aguirre A. Biochim. Biophys. Acta 1614 (2003) 104-115
29. Suarez T., Gallager W.R., Aguirre A., Goni F.M., and Nieva J.L. J. Virol. 74 (2000) 8047
30. Yang J., Gabrys C.M., and Weliky D.P. Biochemistry 40 (2001) 8126-8137
31. Yang J., Parkanzky P.D., Khunte B.A., Canlas C.G., Yanng R., Gabrys C.M., and Weliky D.P. J. Mol. Graphics Modell. 19 (2001) 129-135
32. Yang R., Yang J., and Weliky D.P. Biochemistry 42 (2003) 3527-3535
33. Yang J., and Weliky D.P. Biochemistry 42 (2003) 11879-11890
34. Yang J., Prorok M., Castellino F.J., and Weliky D.P. Biophys. J. 87 (2004) 1951-1963
35. Martin I., Defrise-Quertain F., Mandieau V., Nielsen N.M., Saermark T., Burny A., Brasseur R., Ruysschaert J.M., and Vandenbranden M. Biochem. Biophys. Res. Commun. 175 (1991) 872-879
36. Martin I., Defrise-Quertain F., Decroly E., Vandenbranden M., Brasseur R., and Ruysschaert J.M. Biochim. Biophys. Acta 1145 (1993) 124-133
37. Martin I., Dubois M.C., Defrise-Quertain F., Saermark T., Burny A., Brasseur R., and Ruysschaert J.M. J. Virol. 68 (1994) 1139-1148
38. Martin I., Dubois M.C., Saermark T., Epand R.M., and Ruysschaert J.M. FEBS Lett. 333 (1993) 325-330
39. Martin I., Schaal H., Scheid A., and Ruysschaert J.M. J. Virol. 70 (1996) 298-304
40. Martin I., Ruysschaert J.M., and Epand R.M. Adv. Drug Deliv. Rev. 38 (1999) 233-255
41. Kamath S., and Wong T.C. Biophys. J. 83 (2002) 135-143
42. Morris K.F., Gao X., and Wong T.C. Biochim. Biophys. Acta 1667 (2006) 67-81
43. Castano S., and Desbat B. Biochim. Biophys. Acta 1715 (2005) 81-95
44. Efremov R.G., Nolde D.E., Volynsky P.E., Chernyavsky A.A., Dubovskii P.V., and Arseniev A.S. FEBS Lett. 462 (1999) 205-210
45. Wilschut J., and Hoekstra D. Chem. Phys. Lipids 40 (1986) 145-166
46. Henry G.D., and Sykes B.D. Methods Enzymol. 239 (1994) 515-535
47. Opella S.J., Kim Y., and McDonnell P. Methods Enzymol. 239 (1994) 536-560
48. Mayer L.D., Hope M.J., and Cullis P.R. Biochim. Biophys. Acta 858 (1986) 161-168
49. Lobley A., Whitmore L., and Wallace B.A. Bioinformatics 18 (2002) 211-212
50. Whitmore L., and Wallace B.A. Nucleic Acids Res. 32 (2004) W668-W673
51. Olah G.A., and Huang H.W. J. Chem. Phys. 89 (1988) 2531-2538
52. Olah G.A., and Huang H.W. J. Chem. Phys. 89 (1988) 6956-6962
53. Wu Y., Huang H.W., and Olah G.A. Biophys. J. 57 (1990) 797-806
54. White S.H., Wimley W.C., Ladokhin A.S., and Hristrova K. Methods Enzymol. 295 (1998) 62-87
55. Jeener J., Meier B.H., Bachmann P., and Ernst R.R. J. Chem. Phys. 71 (1979) 4546-4553
56. Rance M., Sørensen O.W., Bodenhausen G., Wagner G., Ernst R.R., and Wüthrich K. Bioche. Biophys. Res. Commun. 117 (1983) 479-485
57. Braunschweiler L., and Ernst R.R. J. Magn. Reson. 53 (1983) 521-528
58. Hwang T.L., and Shaka A.J. J. Magn. Reson. Ser. A 112 (1995) 275-279
59. Redfield A.G., and Kunz S.D. J. Magn. Reson. 19 (1975) 250-254
60. T.D. Goddard, D.G. Kneller, University of California, San Francisco, 2004.
61. Yip D., and Case D.A. J. Magn. Reson. 83 (1989) 643-648
62. MacKerell A.D.Jr., Bashford D., Bellot R.L., Dunbrack R.L.Jr., Evanseck J.D., Field M.J., Fischer S., Gao J., Guo H., Ha S., Joseph-McCarthy D., Kuchnir L., Kuczera K., Lau F.T.K., Mattos C., Michnick S., Ngo T., Nguyen D.T., Prodhom B., Reiher W.E.I., Roux B., Schlenkrich M., Smith J.C., Stote R., Straub J., Watanabe M., Wiorkiewicz-Kuczera J., Yin D., and Karplus M. J. Phys. Chem. B 102 (1998) 3586-3616
63. Laskowski R.A., MacArthur W., Moss D.S., and Thornton J.M. J. Appl. Crystallogr. 26 (1993) 283-291
64. Humphrey W., Dalke A., and Schulten K. J. Mol. Graph. 14 (1996) 33-38
65. Phillips J.C., Braun R., Wang W., Gumbart J., Tajkhorshid E., Villa E., Chipot C., Skeel R.D., Kale L., and Schulten K. J. Comput. Chem. 26 (2005) 1781-1802
66. Feller S.E., and MacKerell Jr. A.D. J. Phys. Chem. B 104 (2000) 7510-7515
67. Tu K., Tobias D.J., and Klein M.L. Biophys. J. 69 (1995) 2558-2562
68. Essmann U., Perera L., Berkowitz M.L., Darden T., Lee H., and Pedersen L.G. J. Chem. Phys. 103 (1995) 8577-8593
69. Grubmüller H., Heller H., Windemuth A., and Schulten K. Mol. Simul. 6 (1991) 121-142
70. Tuckerman M., and Berne B.J. J. Chem. Phys. 97 (1992) 1990-2001
71. Kaiser E.T., and Kédzy F.J. Proc. Natl. Acad. Sci. USA 80 (1983) 1137-1143
72. Wimley W.C., and White S.H. Nat. Struct. Biol. 3 (1996) 842-848
73. Greenhut S.F., Bourgeois V.R., and Roseman M.A. J. Biol. Chem. 261 (1986) 3670-3675
74. Seelig J., and Ganz P. Biochemistry 30 (1991) 9354-9359
75. Plager D.A., and Nelsestuen G.L. Biochemistry 33 (1994) 7005-7013
76. Chakrabartty A., Schellman J.A., and Baldwin R.L. Nature 351 (1991) 586-588