Chloroplast microsatellite markers reveal zannichellia haplotypes across Europe using herbarium DNA

Belgian Journal of Botany

Volumn 140, Issue 1, 2007, Pages 109-120

  Triest, Ludwig ^a   Thi, Van Tran ^a,b   Sierens, Tim ^a  

^a VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

^b Institute of Agricultural Genetics   (Viet Nam)

Author keywords

Ancient DNA; Biogeography; Phylogeny; ppSSR; Zannichellia

Indexed keywords

PEDUNCULATA; ZANNICHELLIA; ZANNICHELLIA PALUSTRIS;

EID: 34547975250     PISSN: 07784031     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (25)

1. BANERJEE M. & BROWN T.A.A, 2002. - Preservation of nuclear but not chloroplast DNA in archeological assemblages of charred wheat grains. Ancient Biomolecules 4: 59-63.
2. BISS P., FREELAND J., SILVERTOWN J., MCCONWAY K. & LUTMAN P., 2003. - Successful amplification of rice chloroplast microsatellites from century-old grass samples from the park grass experiment. Plant Mol. Biol. Rep. 21: 249-257.
3. CHENG K.-T., CHANG H.-C., SU C.-H. & HSU K.-L., 1997. - Identification of dried rhizomes of Coptis species using random amplified polymorphic DNA. Bot. Bull. Acad. Sin. 38: 241-244.
4. CLEMENT M., POSADA D. & CRANDALL K., 2000. - TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9: 1657-1660.
5. FU R.-Z., WANG J., SUN Y.-R. & SHAW P.-C., 1998. - Extraction of genomic DNA suitable for PCR analysis from dried plant rhizome/roots. Biotechniques 25: 797-801.
6. GUGERLI F., PARDUCCI L. & PETIT R., 2005. - Ancient plant DNA : review and prospects. New Phytol. 166:409-418.
7. SHII T. & MCCOUGH S.R., 2000. - Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species. Theor. Appl. Genet. 100: 1257-1266.
8. KRESS W.J., WURDACK K.J., ZIMMER E.A., WEIGT L.A. & JANZEN D.H., 2005. -Use of barcodes to identify flowering plants. Proc. Natl. Acad. Sci. USA 102(23): 8369-8374.
9. PETIT R.J., AGUINAGALDE I., DE BEAULIEU J.-L., BITTKAU C., BREWER S., CHEDDADI R., ENNOS R., FINESCHI S., GRIVET D., LASCOUX M., MOHANTY A., MÜLLER- STARCK G. DEMESURE-MUSCH B., PALMÉ A., MARTIN J.P. & VENDRAMIN G.G., 2003. - Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300: 1563-1565.
10. PETIT R.J., DUMINIL J., FINESHI S., HAMPE A., SALVINI D. & VENDRAMIN G.G., 2005. - Comparative organisation of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol. Ecol. 14:689-701.
11. PROVAN J. & HOLLINGSWORTH P.M., 2001. - Chloroplast microsatellites: new tools for studies in plant ecology and evolution. Trends Ecol. Evol. 16: 142-147.
12. RANIELLO R. & PROCACCINI G., 2002. - Ancient DNA in the seagrass Posidonia oceanica. Marine Ecol. - Progr. Ser. 227: 269-273.
13. REESE G., 1967. - Cytologische und taxonomische Untersuchungen an Zannichellia palustris L. Biol. Zentralblatt 86: 277-306.
14. ROGERS S. & BENDICH A., 1985. - Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol. Biol. 5: 69-76.
15. SALTONSTALL K., 2002. - Cryptic invasion by a nonnative genotype of the common reed, Phragmites australis, into North America. Proc. Natl. Acad. Sci. USA 99: 2445-2449.
16. SALTONSTALL K., 2003. - Microsatellite variation within and among North American lineages of Phragmites australis. Mol. Ecol. 12: 1689-1702.
17. SAVOLAINEN V., CUÉNOUD P., SPICHIGER R., MARTINEZ M.D.P., CRÈVECOEUR M. & MANEN J.-F., 1995. - The use of herbarium specimens in DNA phylogenetics - evaluation and improvement. Plant Syst. Evol. 197: 87-98.
18. SINGH M., AHUJA B. & AHUJA P.S., 1999. - Isolation and PCR amplification of genomic DNA from market samples of dry tea. Plant Mol. Biol. Rep. 17: 171-178.
19. TRIEST L. & VANHECKE L., 1991. - Isozymes in European and Mediterranean Zannichellia (Zannichelliaceae) populations: a situation of predominant inbreeders. In: TRIEST L. (ed.), Isozymes in water plants, Op. Bot. Belg. 4: 133-166. Meise, National Botanic Garden, Belgium.
20. TUTIN T.G., HEYWOOD V.H., BURGES N.A., MOORE, D.M., VALENTINE D.H., WALTERS S.M. & WEBB D.A., 1980. - Flora Europaea, vol. 5. Alismataceae to Orchidaceae, 1st edn. Cambridge University Press, Cambridge, 452 pp.
21. VAN VIERSSEN W., 1982a. - The ecology of communities dominated by Zannichellia taxa in Western Europe. I. Characterization and autecology of the Zannichellia taxa. Aquat. Bot. 12: 103-155.
22. VAN VIERSSEN W., 1982b. - On the identity and autecology of Zannichellia peltata Bertol. in Western Europe. Aquat. Bot. 13: 367-383.
23. VAN VIERSSEN W., 1982c. - The ecology of communities dominated by Zannichellia taxa in Western Europe II. In: Distribution, synecology and productivity aspects in relation to environmental factors. Aquat. Bot. 13: 385-483.
24. WAYNE R.K., LEONARD J.A. & COOPER A., 1999. - Full of sound and fury: history of ancient DNA. Annu. Rev. Ecol. Syst. 30: 457-477.
25. WEISING K. & GARDNER C., 1999. - A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42: 9-19.